Strain Fitness in Shewanella loihica PV-4 around Shew_3135

Experiment: Doxycycline hyclate 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 10 mg/ml
3,726,650	+				+0.2
3,727,271	-				+0.1
3,727,320	-				+0.3
3,727,611	-				+0.5
3,728,019	-		Shew_3135	0.31	-0.6
3,728,044	-		Shew_3135	0.33	-1.1
3,728,124	-		Shew_3135	0.38	+2.6
3,728,238	+		Shew_3135	0.45	+1.5
3,728,320	+		Shew_3135	0.50	-0.5
3,728,330	+		Shew_3135	0.50	-1.1
3,728,411	+		Shew_3135	0.55	-0.0
3,728,500	-		Shew_3135	0.60	-0.7
3,729,098	+				+0.2
3,729,150	-				+0.3
3,729,644	-		Shew_3136	0.15	+0.1
3,729,685	+		Shew_3136	0.17	-0.5
3,729,685	+		Shew_3136	0.17	+0.5
3,729,685	+		Shew_3136	0.17	-0.1
3,729,754	+		Shew_3136	0.19	+0.2
3,729,785	+		Shew_3136	0.20	-0.1
3,729,850	-		Shew_3136	0.23	+1.0
3,729,981	-		Shew_3136	0.27	+0.1
3,730,006	-		Shew_3136	0.28	-0.1