Strain Fitness in Shewanella loihica PV-4 around Shew_2804

Experiment: Doxycycline hyclate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2803 and Shew_2804 are separated by 284 nucleotidesShew_2804 and Shew_2805 are separated by 481 nucleotides Shew_2803: Shew_2803 - DNA-binding transcriptional regulator TorR (RefSeq), at 3,321,446 to 3,322,171 _2803 Shew_2804: Shew_2804 - type IV pilus assembly PilZ (RefSeq), at 3,322,456 to 3,322,824 _2804 Shew_2805: Shew_2805 - choloylglycine hydrolase (RefSeq), at 3,323,306 to 3,324,391 _2805 Position (kb) 3322 3323Strain fitness (log2 ratio) -1 0 1at 3321.613 kb on - strand, within Shew_2803at 3321.636 kb on + strand, within Shew_2803at 3322.055 kb on - strand, within Shew_2803at 3322.208 kb on - strandat 3322.762 kb on + strand, within Shew_2804at 3323.142 kb on + strandat 3323.142 kb on + strandat 3323.248 kb on + strandat 3323.377 kb on - strandat 3323.601 kb on + strand, within Shew_2805

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml
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3,321,613 - Shew_2803 0.23 +0.6
3,321,636 + Shew_2803 0.26 -0.3
3,322,055 - Shew_2803 0.84 -0.6
3,322,208 - -0.3
3,322,762 + Shew_2804 0.83 -0.7
3,323,142 + +0.7
3,323,142 + -0.3
3,323,248 + -0.3
3,323,377 - +0.9
3,323,601 + Shew_2805 0.27 -0.3

Or see this region's nucleotide sequence