Strain Fitness in Shewanella loihica PV-4 around Shew_2459

Experiment: Doxycycline hyclate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2458 and Shew_2459 are separated by 243 nucleotidesShew_2459 and Shew_2460 are separated by 106 nucleotides Shew_2458: Shew_2458 - glutathione S-transferase domain-containing protein (RefSeq), at 2,890,901 to 2,891,761 _2458 Shew_2459: Shew_2459 - hypothetical protein (RefSeq), at 2,892,005 to 2,892,352 _2459 Shew_2460: Shew_2460 - hypothetical protein (RefSeq), at 2,892,459 to 2,893,502 _2460 Position (kb) 2892 2893Strain fitness (log2 ratio) -1 0 1at 2891.040 kb on + strand, within Shew_2458at 2891.696 kb on + strandat 2891.728 kb on - strandat 2891.751 kb on - strandat 2891.837 kb on + strandat 2892.242 kb on + strand, within Shew_2459at 2892.465 kb on - strandat 2892.581 kb on + strand, within Shew_2460at 2892.582 kb on - strand, within Shew_2460at 2892.589 kb on - strand, within Shew_2460at 2893.229 kb on - strand, within Shew_2460

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml
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2,891,040 + Shew_2458 0.16 +0.6
2,891,696 + +0.1
2,891,728 - -0.0
2,891,751 - +0.5
2,891,837 + +0.3
2,892,242 + Shew_2459 0.68 -1.0
2,892,465 - +0.6
2,892,581 + Shew_2460 0.12 -1.2
2,892,582 - Shew_2460 0.12 -0.5
2,892,589 - Shew_2460 0.12 +0.4
2,893,229 - Shew_2460 0.74 -0.8

Or see this region's nucleotide sequence