Strain Fitness in Shewanella loihica PV-4 around Shew_2382
Experiment: Doxycycline hyclate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Doxycycline hyclate 10 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,787,277 | + | Shew_2381 | 0.44 | +0.3 | |
2,787,421 | - | Shew_2381 | 0.55 | +1.2 | |
2,787,482 | + | Shew_2381 | 0.60 | -0.4 | |
2,787,482 | + | Shew_2381 | 0.60 | +0.3 | |
2,787,482 | + | Shew_2381 | 0.60 | +0.0 | |
2,787,490 | - | Shew_2381 | 0.61 | +0.3 | |
2,787,490 | - | Shew_2381 | 0.61 | +0.5 | |
2,787,517 | - | Shew_2381 | 0.63 | -0.1 | |
2,787,517 | - | Shew_2381 | 0.63 | +0.2 | |
2,787,814 | + | Shew_2381 | 0.87 | -1.8 | |
2,787,814 | + | Shew_2381 | 0.87 | +0.2 | |
2,787,814 | + | Shew_2381 | 0.87 | -0.1 | |
2,787,822 | - | Shew_2381 | 0.87 | -0.1 | |
2,788,466 | + | Shew_2382 | 0.23 | -1.4 | |
2,788,530 | + | Shew_2382 | 0.30 | +0.1 | |
2,788,557 | - | Shew_2382 | 0.33 | -1.7 | |
2,788,630 | + | Shew_2382 | 0.40 | -2.0 | |
2,788,884 | - | Shew_2382 | 0.66 | -0.8 | |
2,789,307 | + | +0.3 | |||
2,789,315 | - | -0.0 | |||
2,789,367 | - | Shew_2383 | 0.14 | +0.0 | |
2,789,622 | + | Shew_2383 | 0.53 | -0.6 | |
2,789,670 | + | Shew_2383 | 0.61 | +0.8 | |
2,789,850 | + | Shew_2383 | 0.88 | -0.1 | |
2,790,113 | + | +0.3 | |||
2,790,147 | - | +0.2 |
Or see this region's nucleotide sequence