Strain Fitness in Shewanella loihica PV-4 around Shew_2073

Experiment: Doxycycline hyclate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2072 and Shew_2073 are separated by 591 nucleotidesShew_2073 and Shew_2074 are separated by 58 nucleotides Shew_2072: Shew_2072 - endonuclease III (RefSeq), at 2,394,292 to 2,394,933 _2072 Shew_2073: Shew_2073 - lactoylglutathione lyase (RefSeq), at 2,395,525 to 2,395,935 _2073 Shew_2074: Shew_2074 - TonB-dependent receptor (RefSeq), at 2,395,994 to 2,398,504 _2074 Position (kb) 2395 2396Strain fitness (log2 ratio) -1 0 1 2at 2394.672 kb on - strand, within Shew_2072at 2394.676 kb on + strand, within Shew_2072at 2395.372 kb on - strandat 2395.645 kb on + strand, within Shew_2073at 2396.651 kb on + strand, within Shew_2074

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml
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2,394,672 - Shew_2072 0.59 +2.1
2,394,676 + Shew_2072 0.60 -0.2
2,395,372 - +0.1
2,395,645 + Shew_2073 0.29 -0.6
2,396,651 + Shew_2074 0.26 +1.0

Or see this region's nucleotide sequence