Strain Fitness in Shewanella loihica PV-4 around Shew_1797

Experiment: Doxycycline hyclate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1796 and Shew_1797 overlap by 14 nucleotidesShew_1797 and Shew_1798 overlap by 8 nucleotidesShew_1798 and Shew_1799 are separated by 208 nucleotides Shew_1796: Shew_1796 - hypothetical protein (RefSeq), at 2,056,472 to 2,059,096 _1796 Shew_1797: Shew_1797 - paraquat-inducible protein A (RefSeq), at 2,059,083 to 2,059,715 _1797 Shew_1798: Shew_1798 - paraquat-inducible protein A (RefSeq), at 2,059,708 to 2,060,370 _1798 Shew_1799: Shew_1799 - YebG family protein (RefSeq), at 2,060,579 to 2,060,875 _1799 Position (kb) 2059 2060Strain fitness (log2 ratio) -1 0 1at 2058.769 kb on - strand, within Shew_1796at 2058.860 kb on - strandat 2059.127 kb on - strandat 2059.521 kb on - strand, within Shew_1797at 2060.045 kb on + strand, within Shew_1798at 2060.165 kb on + strand, within Shew_1798at 2060.358 kb on + strandat 2060.484 kb on - strandat 2060.484 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml
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2,058,769 - Shew_1796 0.88 +0.1
2,058,860 - -0.3
2,059,127 - -0.3
2,059,521 - Shew_1797 0.69 -0.8
2,060,045 + Shew_1798 0.51 +0.1
2,060,165 + Shew_1798 0.69 -0.3
2,060,358 + +0.4
2,060,484 - +1.2
2,060,484 - -0.4

Or see this region's nucleotide sequence