Strain Fitness in Shewanella loihica PV-4 around Shew_1734

Experiment: Doxycycline hyclate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1732 and Shew_1733 overlap by 4 nucleotidesShew_1733 and Shew_1734 are separated by 30 nucleotidesShew_1734 and Shew_1735 are separated by 321 nucleotides Shew_1732: Shew_1732 - hypothetical protein (RefSeq), at 1,983,670 to 1,984,167 _1732 Shew_1733: Shew_1733 - thioesterase superfamily protein (RefSeq), at 1,984,164 to 1,984,628 _1733 Shew_1734: Shew_1734 - hypothetical protein (RefSeq), at 1,984,659 to 1,985,048 _1734 Shew_1735: Shew_1735 - TonB-dependent receptor (RefSeq), at 1,985,370 to 1,987,511 _1735 Position (kb) 1984 1985 1986Strain fitness (log2 ratio) -1 0 1at 1983.660 kb on + strandat 1983.668 kb on - strandat 1983.806 kb on + strand, within Shew_1732at 1983.991 kb on + strand, within Shew_1732at 1984.120 kb on - strandat 1984.120 kb on - strandat 1984.449 kb on - strand, within Shew_1733at 1984.945 kb on + strand, within Shew_1734at 1984.945 kb on + strand, within Shew_1734at 1985.822 kb on + strand, within Shew_1735

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml
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1,983,660 + +1.3
1,983,668 - +0.6
1,983,806 + Shew_1732 0.27 +0.3
1,983,991 + Shew_1732 0.64 +1.0
1,984,120 - -0.0
1,984,120 - +1.4
1,984,449 - Shew_1733 0.61 +1.3
1,984,945 + Shew_1734 0.73 -0.7
1,984,945 + Shew_1734 0.73 -0.4
1,985,822 + Shew_1735 0.21 +0.1

Or see this region's nucleotide sequence