Strain Fitness in Shewanella loihica PV-4 around Shew_1372

Experiment: Doxycycline hyclate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1371 and fliL are separated by 99 nucleotidesfliL and fliM are separated by 42 nucleotides Shew_1371: Shew_1371 - flagellar hook-length control protein (RefSeq), at 1,580,960 to 1,582,666 _1371 Shew_1372: fliL - flagellar basal body-associated protein FliL (RefSeq), at 1,582,766 to 1,583,287 fliL Shew_1373: fliM - flagellar motor switch protein FliM (RefSeq), at 1,583,330 to 1,584,355 fliM Position (kb) 1582 1583 1584Strain fitness (log2 ratio) -1 0 1at 1581.863 kb on + strand, within Shew_1371at 1582.083 kb on + strand, within Shew_1371at 1582.091 kb on - strand, within Shew_1371at 1582.316 kb on + strand, within Shew_1371at 1583.140 kb on - strand, within fliLat 1583.258 kb on + strandat 1583.368 kb on + strandat 1583.376 kb on - strandat 1583.828 kb on + strand, within fliM

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml
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1,581,863 + Shew_1371 0.53 -0.8
1,582,083 + Shew_1371 0.66 -0.4
1,582,091 - Shew_1371 0.66 +0.9
1,582,316 + Shew_1371 0.79 -0.5
1,583,140 - fliL Shew_1372 0.72 -1.1
1,583,258 + -0.2
1,583,368 + -0.6
1,583,376 - +0.0
1,583,828 + fliM Shew_1373 0.49 -1.4

Or see this region's nucleotide sequence