Strain Fitness in Shewanella loihica PV-4 around Shew_1366

Experiment: Doxycycline hyclate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1364 and Shew_1365 are separated by 196 nucleotidesShew_1365 and fliF are separated by 58 nucleotidesfliF and fliG overlap by 8 nucleotides Shew_1364: Shew_1364 - two component, sigma54 specific, Fis family transcriptional regulator (RefSeq), at 1,573,108 to 1,574,451 _1364 Shew_1365: Shew_1365 - flagellar hook-basal body complex subunit FliE (RefSeq), at 1,574,648 to 1,574,980 _1365 Shew_1366: fliF - flagellar MS-ring protein (RefSeq), at 1,575,039 to 1,576,736 fliF Shew_1367: fliG - flagellar motor switch protein G (RefSeq), at 1,576,729 to 1,577,772 fliG Position (kb) 1575 1576 1577Strain fitness (log2 ratio) -1 0 1at 1574.174 kb on + strand, within Shew_1364at 1574.298 kb on + strand, within Shew_1364at 1574.306 kb on - strand, within Shew_1364at 1574.343 kb on + strandat 1574.837 kb on + strand, within Shew_1365at 1574.919 kb on + strand, within Shew_1365at 1575.120 kb on + strandat 1575.604 kb on - strand, within fliFat 1575.616 kb on + strand, within fliFat 1575.668 kb on + strand, within fliFat 1575.673 kb on + strand, within fliFat 1576.390 kb on - strand, within fliFat 1576.456 kb on + strand, within fliFat 1577.172 kb on + strand, within fliGat 1577.180 kb on - strand, within fliG

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml
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1,574,174 + Shew_1364 0.79 -0.8
1,574,298 + Shew_1364 0.89 -0.5
1,574,306 - Shew_1364 0.89 -0.6
1,574,343 + +0.4
1,574,837 + Shew_1365 0.57 -0.5
1,574,919 + Shew_1365 0.81 +0.1
1,575,120 + -0.4
1,575,604 - fliF Shew_1366 0.33 +1.5
1,575,616 + fliF Shew_1366 0.34 -1.0
1,575,668 + fliF Shew_1366 0.37 -1.1
1,575,673 + fliF Shew_1366 0.37 -1.5
1,576,390 - fliF Shew_1366 0.80 -1.3
1,576,456 + fliF Shew_1366 0.83 +0.1
1,577,172 + fliG Shew_1367 0.42 -1.2
1,577,180 - fliG Shew_1367 0.43 -0.6

Or see this region's nucleotide sequence