Experiment: Doxycycline hyclate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0847 and Shew_0848 are separated by 119 nucleotides Shew_0848 and Shew_0849 are separated by 92 nucleotides
Shew_0847: Shew_0847 - Rh family protein/ammonium transporter (RefSeq), at 969,735 to 970,985
_0847
Shew_0848: Shew_0848 - hypothetical protein (RefSeq), at 971,105 to 971,431
_0848
Shew_0849: Shew_0849 - TPR repeat-containing protein (RefSeq), at 971,524 to 972,705
_0849
Position (kb) 971
972 Strain fitness (log2 ratio) -1
0
1 at 970.128 kb on - strand, within Shew_0847 at 970.337 kb on + strand, within Shew_0847 at 970.354 kb on + strand, within Shew_0847 at 970.383 kb on - strand, within Shew_0847 at 970.383 kb on - strand, within Shew_0847 at 970.704 kb on - strand, within Shew_0847 at 970.805 kb on + strand, within Shew_0847 at 971.095 kb on - strand at 971.299 kb on - strand, within Shew_0848 at 971.501 kb on + strand at 971.509 kb on - strand at 971.795 kb on - strand, within Shew_0849 at 971.857 kb on - strand, within Shew_0849 at 971.984 kb on - strand, within Shew_0849 at 972.189 kb on + strand, within Shew_0849 at 972.189 kb on + strand, within Shew_0849 at 972.197 kb on - strand, within Shew_0849 at 972.197 kb on - strand, within Shew_0849 at 972.200 kb on + strand, within Shew_0849 at 972.261 kb on + strand, within Shew_0849 at 972.267 kb on - strand, within Shew_0849 at 972.310 kb on - strand, within Shew_0849 at 972.356 kb on - strand, within Shew_0849 at 972.383 kb on + strand, within Shew_0849 at 972.383 kb on + strand, within Shew_0849 at 972.383 kb on + strand, within Shew_0849 at 972.391 kb on - strand, within Shew_0849 at 972.391 kb on - strand, within Shew_0849 at 972.413 kb on + strand, within Shew_0849
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml remove 970,128 - Shew_0847 0.31 +0.9 970,337 + Shew_0847 0.48 -0.2 970,354 + Shew_0847 0.49 -0.1 970,383 - Shew_0847 0.52 +0.4 970,383 - Shew_0847 0.52 -0.5 970,704 - Shew_0847 0.77 -0.2 970,805 + Shew_0847 0.86 -0.1 971,095 - +0.2 971,299 - Shew_0848 0.59 -0.6 971,501 + +0.3 971,509 - +0.0 971,795 - Shew_0849 0.23 +0.3 971,857 - Shew_0849 0.28 +0.3 971,984 - Shew_0849 0.39 -0.1 972,189 + Shew_0849 0.56 -0.4 972,189 + Shew_0849 0.56 +0.3 972,197 - Shew_0849 0.57 +0.4 972,197 - Shew_0849 0.57 -0.3 972,200 + Shew_0849 0.57 -0.1 972,261 + Shew_0849 0.62 +0.7 972,267 - Shew_0849 0.63 +1.2 972,310 - Shew_0849 0.66 +0.4 972,356 - Shew_0849 0.70 -0.0 972,383 + Shew_0849 0.73 +1.0 972,383 + Shew_0849 0.73 +0.8 972,383 + Shew_0849 0.73 -0.8 972,391 - Shew_0849 0.73 +0.0 972,391 - Shew_0849 0.73 -0.8 972,413 + Shew_0849 0.75 +0.5
Or see this region's nucleotide sequence