Strain Fitness in Shewanella loihica PV-4 around Shew_0695

Experiment: Doxycycline hyclate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0694 and Shew_0695 are separated by 181 nucleotidesShew_0695 and Shew_0696 are separated by 226 nucleotides Shew_0694: Shew_0694 - hypothetical protein (RefSeq), at 787,511 to 788,452 _0694 Shew_0695: Shew_0695 - hypothetical protein (RefSeq), at 788,634 to 788,849 _0695 Shew_0696: Shew_0696 - ribokinase (RefSeq), at 789,076 to 789,990 _0696 Position (kb) 788 789Strain fitness (log2 ratio) -2 -1 0 1at 787.717 kb on - strand, within Shew_0694at 787.765 kb on + strand, within Shew_0694at 787.940 kb on - strand, within Shew_0694at 788.002 kb on + strand, within Shew_0694at 788.222 kb on - strand, within Shew_0694at 788.342 kb on + strand, within Shew_0694at 788.342 kb on + strand, within Shew_0694at 788.432 kb on + strandat 788.452 kb on + strandat 788.524 kb on + strandat 788.771 kb on + strand, within Shew_0695at 789.059 kb on - strandat 789.059 kb on - strandat 789.072 kb on - strandat 789.164 kb on - strandat 789.251 kb on + strand, within Shew_0696at 789.251 kb on + strand, within Shew_0696at 789.274 kb on - strand, within Shew_0696at 789.293 kb on + strand, within Shew_0696at 789.301 kb on - strand, within Shew_0696at 789.306 kb on - strand, within Shew_0696at 789.321 kb on + strand, within Shew_0696at 789.396 kb on + strand, within Shew_0696at 789.600 kb on + strand, within Shew_0696at 789.608 kb on - strand, within Shew_0696at 789.771 kb on - strand, within Shew_0696

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml
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787,717 - Shew_0694 0.22 +0.2
787,765 + Shew_0694 0.27 -0.3
787,940 - Shew_0694 0.46 -0.6
788,002 + Shew_0694 0.52 +0.8
788,222 - Shew_0694 0.75 +0.1
788,342 + Shew_0694 0.88 -0.5
788,342 + Shew_0694 0.88 +0.9
788,432 + +0.0
788,452 + +0.7
788,524 + +0.1
788,771 + Shew_0695 0.63 -2.5
789,059 - -0.6
789,059 - +0.4
789,072 - +0.2
789,164 - -0.2
789,251 + Shew_0696 0.19 -0.2
789,251 + Shew_0696 0.19 +1.1
789,274 - Shew_0696 0.22 +1.0
789,293 + Shew_0696 0.24 +0.0
789,301 - Shew_0696 0.25 +0.3
789,306 - Shew_0696 0.25 +1.0
789,321 + Shew_0696 0.27 +0.2
789,396 + Shew_0696 0.35 +0.3
789,600 + Shew_0696 0.57 +0.6
789,608 - Shew_0696 0.58 -0.8
789,771 - Shew_0696 0.76 +0.4

Or see this region's nucleotide sequence