Experiment: Doxycycline hyclate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0689 and Shew_0690 are separated by 171 nucleotides Shew_0690 and Shew_0691 are separated by 189 nucleotides
Shew_0689: Shew_0689 - hypothetical protein (RefSeq), at 782,796 to 783,626
_0689
Shew_0690: Shew_0690 - endonuclease/exonuclease/phosphatase (RefSeq), at 783,798 to 784,871
_0690
Shew_0691: Shew_0691 - hypothetical protein (RefSeq), at 785,061 to 786,194
_0691
Position (kb) 783
784
785 Strain fitness (log2 ratio) -1
0
1
2
3 at 783.331 kb on + strand, within Shew_0689 at 783.339 kb on - strand, within Shew_0689 at 783.722 kb on + strand at 783.790 kb on - strand at 783.841 kb on + strand at 783.896 kb on + strand at 783.904 kb on - strand at 784.095 kb on + strand, within Shew_0690 at 784.137 kb on - strand, within Shew_0690 at 784.605 kb on - strand, within Shew_0690 at 784.683 kb on - strand, within Shew_0690 at 784.830 kb on + strand at 784.838 kb on - strand at 785.041 kb on - strand at 785.305 kb on - strand, within Shew_0691 at 785.305 kb on - strand, within Shew_0691 at 785.368 kb on + strand, within Shew_0691 at 785.368 kb on + strand, within Shew_0691 at 785.368 kb on + strand, within Shew_0691 at 785.376 kb on - strand, within Shew_0691 at 785.468 kb on - strand, within Shew_0691 at 785.558 kb on - strand, within Shew_0691 at 785.620 kb on + strand, within Shew_0691 at 785.620 kb on + strand, within Shew_0691 at 785.692 kb on - strand, within Shew_0691
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml remove 783,331 + Shew_0689 0.64 +0.1 783,339 - Shew_0689 0.65 -0.4 783,722 + -0.2 783,790 - -0.2 783,841 + -0.0 783,896 + -1.1 783,904 - -0.0 784,095 + Shew_0690 0.28 -0.4 784,137 - Shew_0690 0.32 -1.0 784,605 - Shew_0690 0.75 -0.2 784,683 - Shew_0690 0.82 -0.1 784,830 + +0.4 784,838 - -0.7 785,041 - -0.9 785,305 - Shew_0691 0.22 -0.2 785,305 - Shew_0691 0.22 +0.7 785,368 + Shew_0691 0.27 +3.5 785,368 + Shew_0691 0.27 +0.8 785,368 + Shew_0691 0.27 -0.8 785,376 - Shew_0691 0.28 -0.7 785,468 - Shew_0691 0.36 +0.1 785,558 - Shew_0691 0.44 -0.1 785,620 + Shew_0691 0.49 +0.2 785,620 + Shew_0691 0.49 +0.6 785,692 - Shew_0691 0.56 +0.2
Or see this region's nucleotide sequence