Experiment: Doxycycline hyclate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0632 and Shew_0633 are separated by 67 nucleotides Shew_0633 and Shew_0634 are separated by 97 nucleotides Shew_0634 and Shew_0635 are separated by 233 nucleotides
Shew_0632: Shew_0632 - OmpA/MotB domain-containing protein (RefSeq), at 718,786 to 720,231
_0632
Shew_0633: Shew_0633 - hypothetical protein (RefSeq), at 720,299 to 721,741
_0633
Shew_0634: Shew_0634 - hypothetical protein (RefSeq), at 721,839 to 722,240
_0634
Shew_0635: Shew_0635 - hypothetical protein (RefSeq), at 722,474 to 723,169
_0635
Position (kb) 720
721
722 Strain fitness (log2 ratio) -2
-1
0
1
2 at 719.343 kb on - strand, within Shew_0632 at 719.388 kb on - strand, within Shew_0632 at 719.432 kb on + strand, within Shew_0632 at 719.440 kb on - strand, within Shew_0632 at 719.462 kb on + strand, within Shew_0632 at 719.506 kb on - strand, within Shew_0632 at 719.519 kb on + strand, within Shew_0632 at 719.521 kb on - strand, within Shew_0632 at 719.839 kb on - strand, within Shew_0632 at 720.085 kb on + strand, within Shew_0632 at 720.163 kb on - strand at 720.175 kb on + strand at 720.188 kb on - strand at 720.188 kb on - strand at 720.287 kb on + strand at 720.369 kb on - strand at 720.374 kb on - strand at 720.374 kb on - strand at 720.380 kb on + strand at 720.387 kb on + strand at 720.395 kb on - strand at 720.553 kb on + strand, within Shew_0633 at 720.590 kb on - strand, within Shew_0633 at 720.644 kb on - strand, within Shew_0633 at 720.693 kb on - strand, within Shew_0633 at 720.727 kb on - strand, within Shew_0633 at 720.727 kb on - strand, within Shew_0633 at 720.727 kb on - strand, within Shew_0633 at 720.999 kb on - strand, within Shew_0633 at 721.000 kb on + strand, within Shew_0633 at 721.379 kb on + strand, within Shew_0633 at 721.462 kb on + strand, within Shew_0633 at 721.812 kb on - strand at 721.817 kb on + strand at 721.964 kb on - strand, within Shew_0634 at 721.969 kb on - strand, within Shew_0634 at 722.219 kb on - strand at 722.473 kb on + strand at 722.546 kb on - strand, within Shew_0635 at 722.627 kb on + strand, within Shew_0635 at 722.655 kb on - strand, within Shew_0635 at 722.655 kb on - strand, within Shew_0635
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml remove 719,343 - Shew_0632 0.39 +0.9 719,388 - Shew_0632 0.42 +0.1 719,432 + Shew_0632 0.45 +0.2 719,440 - Shew_0632 0.45 -0.1 719,462 + Shew_0632 0.47 +0.2 719,506 - Shew_0632 0.50 -0.7 719,519 + Shew_0632 0.51 -0.3 719,521 - Shew_0632 0.51 +0.3 719,839 - Shew_0632 0.73 +2.3 720,085 + Shew_0632 0.90 +0.7 720,163 - +0.4 720,175 + -0.1 720,188 - -0.1 720,188 - +0.9 720,287 + -0.5 720,369 - -0.3 720,374 - +0.2 720,374 - -0.0 720,380 + +0.1 720,387 + +0.1 720,395 - -0.3 720,553 + Shew_0633 0.18 -0.1 720,590 - Shew_0633 0.20 -0.2 720,644 - Shew_0633 0.24 -0.2 720,693 - Shew_0633 0.27 +0.0 720,727 - Shew_0633 0.30 +1.4 720,727 - Shew_0633 0.30 +0.0 720,727 - Shew_0633 0.30 -0.2 720,999 - Shew_0633 0.49 -0.1 721,000 + Shew_0633 0.49 +0.2 721,379 + Shew_0633 0.75 -0.0 721,462 + Shew_0633 0.81 +0.1 721,812 - -1.8 721,817 + -1.4 721,964 - Shew_0634 0.31 +0.0 721,969 - Shew_0634 0.32 -0.8 722,219 - -1.8 722,473 + -2.2 722,546 - Shew_0635 0.10 +0.3 722,627 + Shew_0635 0.22 +0.8 722,655 - Shew_0635 0.26 -0.1 722,655 - Shew_0635 0.26 +0.6
Or see this region's nucleotide sequence