Experiment: Doxycycline hyclate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0579 and Shew_0580 are separated by 6 nucleotides Shew_0580 and Shew_0581 are separated by 140 nucleotides
Shew_0579: Shew_0579 - arginine N-succinyltransferase (RefSeq), at 656,549 to 657,568
_0579
Shew_0580: Shew_0580 - succinylglutamic semialdehyde dehydrogenase (RefSeq), at 657,575 to 659,038
_0580
Shew_0581: Shew_0581 - hypothetical protein (RefSeq), at 659,179 to 659,979
_0581
Position (kb) 657
658
659
660 Strain fitness (log2 ratio) -1
0
1 at 656.877 kb on + strand, within Shew_0579 at 656.885 kb on - strand, within Shew_0579 at 657.112 kb on - strand, within Shew_0579 at 657.233 kb on + strand, within Shew_0579 at 657.265 kb on + strand, within Shew_0579 at 657.424 kb on + strand, within Shew_0579 at 657.689 kb on - strand at 657.699 kb on - strand at 657.797 kb on - strand, within Shew_0580 at 658.165 kb on + strand, within Shew_0580 at 658.303 kb on + strand, within Shew_0580 at 658.524 kb on - strand, within Shew_0580 at 658.729 kb on + strand, within Shew_0580 at 659.327 kb on + strand, within Shew_0581 at 659.335 kb on - strand, within Shew_0581 at 659.417 kb on - strand, within Shew_0581 at 659.417 kb on - strand, within Shew_0581 at 659.448 kb on + strand, within Shew_0581 at 659.456 kb on - strand, within Shew_0581 at 659.497 kb on - strand, within Shew_0581 at 659.826 kb on + strand, within Shew_0581 at 659.894 kb on + strand, within Shew_0581
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml remove 656,877 + Shew_0579 0.32 +0.3 656,885 - Shew_0579 0.33 +0.4 657,112 - Shew_0579 0.55 -0.9 657,233 + Shew_0579 0.67 +0.1 657,265 + Shew_0579 0.70 +1.2 657,424 + Shew_0579 0.86 +0.3 657,689 - +0.1 657,699 - -0.1 657,797 - Shew_0580 0.15 -0.0 658,165 + Shew_0580 0.40 -0.1 658,303 + Shew_0580 0.50 +0.4 658,524 - Shew_0580 0.65 +0.0 658,729 + Shew_0580 0.79 +0.4 659,327 + Shew_0581 0.18 -0.1 659,335 - Shew_0581 0.19 +1.7 659,417 - Shew_0581 0.30 -0.2 659,417 - Shew_0581 0.30 +0.4 659,448 + Shew_0581 0.34 +0.6 659,456 - Shew_0581 0.35 +0.0 659,497 - Shew_0581 0.40 +1.6 659,826 + Shew_0581 0.81 +0.9 659,894 + Shew_0581 0.89 +0.6
Or see this region's nucleotide sequence