Experiment: Doxycycline hyclate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0510 and Shew_0511 are separated by 9 nucleotides Shew_0511 and Shew_0512 overlap by 8 nucleotides
Shew_0510: Shew_0510 - putative outer membrane adhesin like proteiin (RefSeq), at 568,682 to 577,120
_0510
Shew_0511: Shew_0511 - HlyD family type I secretion membrane fusion protein (RefSeq), at 577,130 to 578,455
_0511
Shew_0512: Shew_0512 - ABC transporter-related protein (RefSeq), at 578,448 to 580,547
_0512
Position (kb) 577
578
579 Strain fitness (log2 ratio) -1
0
1
2
3 at 576.354 kb on + strand at 576.362 kb on - strand at 576.529 kb on + strand at 576.569 kb on - strand at 576.592 kb on - strand at 576.802 kb on - strand at 576.825 kb on - strand at 576.951 kb on + strand at 576.959 kb on - strand at 577.406 kb on - strand, within Shew_0511 at 577.453 kb on + strand, within Shew_0511 at 577.546 kb on - strand, within Shew_0511 at 577.634 kb on - strand, within Shew_0511 at 577.896 kb on + strand, within Shew_0511 at 577.919 kb on - strand, within Shew_0511 at 577.919 kb on - strand, within Shew_0511 at 578.103 kb on + strand, within Shew_0511 at 578.303 kb on - strand, within Shew_0511 at 578.329 kb on - strand at 578.539 kb on + strand at 578.547 kb on - strand at 578.547 kb on - strand at 578.547 kb on - strand at 578.547 kb on - strand at 578.642 kb on + strand at 578.893 kb on - strand, within Shew_0512 at 579.081 kb on + strand, within Shew_0512 at 579.179 kb on + strand, within Shew_0512 at 579.187 kb on - strand, within Shew_0512 at 579.291 kb on - strand, within Shew_0512 at 579.301 kb on - strand, within Shew_0512 at 579.301 kb on - strand, within Shew_0512
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml remove 576,354 + +0.0 576,362 - +0.3 576,529 + -0.1 576,569 - -0.2 576,592 - +0.5 576,802 - -0.8 576,825 - +0.1 576,951 + +0.4 576,959 - -1.1 577,406 - Shew_0511 0.21 +0.1 577,453 + Shew_0511 0.24 +0.7 577,546 - Shew_0511 0.31 +0.6 577,634 - Shew_0511 0.38 +0.4 577,896 + Shew_0511 0.58 +0.2 577,919 - Shew_0511 0.60 -0.1 577,919 - Shew_0511 0.60 +1.0 578,103 + Shew_0511 0.73 +0.6 578,303 - Shew_0511 0.88 -0.1 578,329 - +0.7 578,539 + -0.3 578,547 - +0.3 578,547 - +0.1 578,547 - +0.2 578,547 - -0.8 578,642 + +0.5 578,893 - Shew_0512 0.21 -0.0 579,081 + Shew_0512 0.30 -0.8 579,179 + Shew_0512 0.35 -0.3 579,187 - Shew_0512 0.35 -1.1 579,291 - Shew_0512 0.40 +0.1 579,301 - Shew_0512 0.41 +2.9 579,301 - Shew_0512 0.41 -0.1
Or see this region's nucleotide sequence