Experiment: Doxycycline hyclate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0508 and Shew_0509 are separated by 265 nucleotides Shew_0509 and Shew_0510 are separated by 52 nucleotides Shew_0510 and Shew_0511 are separated by 9 nucleotides
Shew_0508: Shew_0508 - xanthine/uracil/vitamin C permease (RefSeq), at 566,781 to 567,938
_0508
Shew_0509: Shew_0509 - hypothetical protein (RefSeq), at 568,204 to 568,629
_0509
Shew_0510: Shew_0510 - putative outer membrane adhesin like proteiin (RefSeq), at 568,682 to 577,120
_0510
Shew_0511: Shew_0511 - HlyD family type I secretion membrane fusion protein (RefSeq), at 577,130 to 578,455
_0511
Position (kb) 568
569
570
571
572
573
574
575
576
577
578 Strain fitness (log2 ratio) -2
-1
0
1
2 at 567.774 kb on - strand, within Shew_0508 at 568.067 kb on + strand at 568.440 kb on - strand, within Shew_0509 at 568.442 kb on + strand, within Shew_0509 at 568.871 kb on - strand at 569.139 kb on + strand at 569.185 kb on + strand at 569.335 kb on + strand at 569.646 kb on + strand, within Shew_0510 at 569.699 kb on - strand, within Shew_0510 at 569.771 kb on - strand, within Shew_0510 at 569.813 kb on + strand, within Shew_0510 at 569.933 kb on + strand, within Shew_0510 at 569.980 kb on + strand, within Shew_0510 at 569.990 kb on + strand, within Shew_0510 at 570.124 kb on + strand, within Shew_0510 at 570.170 kb on - strand, within Shew_0510 at 570.492 kb on - strand, within Shew_0510 at 570.504 kb on + strand, within Shew_0510 at 570.504 kb on + strand, within Shew_0510 at 570.504 kb on + strand, within Shew_0510 at 570.540 kb on - strand, within Shew_0510 at 570.819 kb on + strand, within Shew_0510 at 570.880 kb on - strand, within Shew_0510 at 570.962 kb on - strand, within Shew_0510 at 570.967 kb on - strand, within Shew_0510 at 571.165 kb on - strand, within Shew_0510 at 571.170 kb on - strand, within Shew_0510 at 571.170 kb on - strand, within Shew_0510 at 571.170 kb on - strand, within Shew_0510 at 571.192 kb on + strand, within Shew_0510 at 571.235 kb on + strand, within Shew_0510 at 571.236 kb on - strand, within Shew_0510 at 571.291 kb on + strand, within Shew_0510 at 571.349 kb on + strand, within Shew_0510 at 571.357 kb on - strand, within Shew_0510 at 571.357 kb on + strand, within Shew_0510 at 571.391 kb on + strand, within Shew_0510 at 571.423 kb on + strand, within Shew_0510 at 571.537 kb on - strand, within Shew_0510 at 571.648 kb on + strand, within Shew_0510 at 571.648 kb on - strand, within Shew_0510 at 571.716 kb on + strand, within Shew_0510 at 571.933 kb on + strand, within Shew_0510 at 572.015 kb on - strand, within Shew_0510 at 572.129 kb on - strand, within Shew_0510 at 572.141 kb on - strand, within Shew_0510 at 572.235 kb on - strand, within Shew_0510 at 572.466 kb on + strand, within Shew_0510 at 572.478 kb on + strand, within Shew_0510 at 573.219 kb on + strand, within Shew_0510 at 573.223 kb on + strand, within Shew_0510 at 573.389 kb on + strand, within Shew_0510 at 574.180 kb on - strand, within Shew_0510 at 574.180 kb on - strand, within Shew_0510 at 574.503 kb on - strand, within Shew_0510 at 574.636 kb on - strand, within Shew_0510 at 574.643 kb on - strand, within Shew_0510 at 574.813 kb on + strand, within Shew_0510 at 574.813 kb on + strand, within Shew_0510 at 574.820 kb on + strand, within Shew_0510 at 574.821 kb on - strand, within Shew_0510 at 574.821 kb on - strand, within Shew_0510 at 575.030 kb on - strand, within Shew_0510 at 575.184 kb on - strand, within Shew_0510 at 575.184 kb on - strand, within Shew_0510 at 575.359 kb on + strand, within Shew_0510 at 575.458 kb on + strand, within Shew_0510 at 575.614 kb on + strand, within Shew_0510 at 575.716 kb on + strand, within Shew_0510 at 575.965 kb on - strand, within Shew_0510 at 576.354 kb on + strand at 576.362 kb on - strand at 576.529 kb on + strand at 576.569 kb on - strand at 576.592 kb on - strand at 576.802 kb on - strand at 576.825 kb on - strand at 576.951 kb on + strand at 576.959 kb on - strand at 577.406 kb on - strand, within Shew_0511 at 577.453 kb on + strand, within Shew_0511 at 577.546 kb on - strand, within Shew_0511 at 577.634 kb on - strand, within Shew_0511 at 577.896 kb on + strand, within Shew_0511 at 577.919 kb on - strand, within Shew_0511 at 577.919 kb on - strand, within Shew_0511 at 578.103 kb on + strand, within Shew_0511
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml remove 567,774 - Shew_0508 0.86 +0.1 568,067 + +0.1 568,440 - Shew_0509 0.55 -2.0 568,442 + Shew_0509 0.56 -0.1 568,871 - -0.3 569,139 + -0.0 569,185 + +0.0 569,335 + -0.1 569,646 + Shew_0510 0.11 +0.1 569,699 - Shew_0510 0.12 -0.6 569,771 - Shew_0510 0.13 -1.4 569,813 + Shew_0510 0.13 -0.4 569,933 + Shew_0510 0.15 +0.1 569,980 + Shew_0510 0.15 +0.3 569,990 + Shew_0510 0.15 -0.2 570,124 + Shew_0510 0.17 -0.4 570,170 - Shew_0510 0.18 +0.1 570,492 - Shew_0510 0.21 +0.3 570,504 + Shew_0510 0.22 -0.0 570,504 + Shew_0510 0.22 +1.0 570,504 + Shew_0510 0.22 +1.2 570,540 - Shew_0510 0.22 +0.2 570,819 + Shew_0510 0.25 +0.1 570,880 - Shew_0510 0.26 -0.7 570,962 - Shew_0510 0.27 -1.6 570,967 - Shew_0510 0.27 +0.2 571,165 - Shew_0510 0.29 -0.9 571,170 - Shew_0510 0.29 +1.9 571,170 - Shew_0510 0.29 +0.1 571,170 - Shew_0510 0.29 +0.3 571,192 + Shew_0510 0.30 -0.5 571,235 + Shew_0510 0.30 -0.3 571,236 - Shew_0510 0.30 +0.0 571,291 + Shew_0510 0.31 -0.6 571,349 + Shew_0510 0.32 +0.9 571,357 - Shew_0510 0.32 +0.3 571,357 + Shew_0510 0.32 +0.8 571,391 + Shew_0510 0.32 -0.1 571,423 + Shew_0510 0.32 -0.2 571,537 - Shew_0510 0.34 +0.2 571,648 + Shew_0510 0.35 +0.4 571,648 - Shew_0510 0.35 +1.1 571,716 + Shew_0510 0.36 +0.1 571,933 + Shew_0510 0.39 -0.0 572,015 - Shew_0510 0.39 +0.3 572,129 - Shew_0510 0.41 -0.1 572,141 - Shew_0510 0.41 -0.1 572,235 - Shew_0510 0.42 +0.1 572,466 + Shew_0510 0.45 +0.5 572,478 + Shew_0510 0.45 -0.3 573,219 + Shew_0510 0.54 +0.2 573,223 + Shew_0510 0.54 -0.9 573,389 + Shew_0510 0.56 +0.2 574,180 - Shew_0510 0.65 -0.2 574,180 - Shew_0510 0.65 +0.4 574,503 - Shew_0510 0.69 -1.1 574,636 - Shew_0510 0.71 +0.1 574,643 - Shew_0510 0.71 +0.1 574,813 + Shew_0510 0.73 -0.1 574,813 + Shew_0510 0.73 -0.1 574,820 + Shew_0510 0.73 -0.5 574,821 - Shew_0510 0.73 -1.1 574,821 - Shew_0510 0.73 -0.4 575,030 - Shew_0510 0.75 -0.2 575,184 - Shew_0510 0.77 -1.3 575,184 - Shew_0510 0.77 -0.3 575,359 + Shew_0510 0.79 -0.6 575,458 + Shew_0510 0.80 +0.0 575,614 + Shew_0510 0.82 -1.2 575,716 + Shew_0510 0.83 -1.8 575,965 - Shew_0510 0.86 +0.2 576,354 + +0.0 576,362 - +0.3 576,529 + -0.1 576,569 - -0.2 576,592 - +0.5 576,802 - -0.8 576,825 - +0.1 576,951 + +0.4 576,959 - -1.1 577,406 - Shew_0511 0.21 +0.1 577,453 + Shew_0511 0.24 +0.7 577,546 - Shew_0511 0.31 +0.6 577,634 - Shew_0511 0.38 +0.4 577,896 + Shew_0511 0.58 +0.2 577,919 - Shew_0511 0.60 -0.1 577,919 - Shew_0511 0.60 +1.0 578,103 + Shew_0511 0.73 +0.6
Or see this region's nucleotide sequence