Experiment: Doxycycline hyclate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0464 and Shew_0465 are separated by 160 nucleotides Shew_0465 and Shew_0466 are separated by 196 nucleotides Shew_0466 and Shew_0467 are separated by 3 nucleotides
Shew_0464: Shew_0464 - hypothetical protein (RefSeq), at 520,368 to 520,751
_0464
Shew_0465: Shew_0465 - hypothetical protein (RefSeq), at 520,912 to 521,322
_0465
Shew_0466: Shew_0466 - acriflavin resistance protein (RefSeq), at 521,519 to 524,593
_0466
Shew_0467: Shew_0467 - RND family efflux transporter MFP subunit (RefSeq), at 524,597 to 525,679
_0467
Position (kb) 521
522
523
524
525 Strain fitness (log2 ratio) -1
0
1
2 at 521.369 kb on - strand at 521.723 kb on + strand at 521.723 kb on + strand at 521.723 kb on + strand at 521.753 kb on - strand at 521.945 kb on - strand, within Shew_0466 at 522.204 kb on + strand, within Shew_0466 at 522.231 kb on - strand, within Shew_0466 at 522.553 kb on + strand, within Shew_0466 at 522.650 kb on - strand, within Shew_0466 at 522.655 kb on - strand, within Shew_0466 at 522.940 kb on - strand, within Shew_0466 at 522.964 kb on + strand, within Shew_0466 at 523.526 kb on - strand, within Shew_0466 at 523.904 kb on - strand, within Shew_0466 at 524.015 kb on - strand, within Shew_0466 at 524.175 kb on - strand, within Shew_0466 at 524.401 kb on + strand at 524.448 kb on + strand at 524.630 kb on - strand at 524.685 kb on + strand at 524.750 kb on + strand, within Shew_0467 at 524.758 kb on - strand, within Shew_0467 at 524.994 kb on + strand, within Shew_0467 at 525.179 kb on - strand, within Shew_0467 at 525.214 kb on + strand, within Shew_0467 at 525.214 kb on + strand, within Shew_0467 at 525.233 kb on - strand, within Shew_0467 at 525.255 kb on - strand, within Shew_0467 at 525.579 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml remove 521,369 - +0.1 521,723 + -0.1 521,723 + -0.4 521,723 + -0.3 521,753 - +0.3 521,945 - Shew_0466 0.14 +1.4 522,204 + Shew_0466 0.22 -0.1 522,231 - Shew_0466 0.23 -0.0 522,553 + Shew_0466 0.34 +0.4 522,650 - Shew_0466 0.37 +2.4 522,655 - Shew_0466 0.37 +0.2 522,940 - Shew_0466 0.46 +0.1 522,964 + Shew_0466 0.47 +0.4 523,526 - Shew_0466 0.65 +0.3 523,904 - Shew_0466 0.78 +0.9 524,015 - Shew_0466 0.81 +2.1 524,175 - Shew_0466 0.86 +0.2 524,401 + -0.0 524,448 + -0.3 524,630 - +0.3 524,685 + +0.0 524,750 + Shew_0467 0.14 -0.7 524,758 - Shew_0467 0.15 -0.0 524,994 + Shew_0467 0.37 +1.4 525,179 - Shew_0467 0.54 +0.7 525,214 + Shew_0467 0.57 +0.3 525,214 + Shew_0467 0.57 +0.6 525,233 - Shew_0467 0.59 +0.4 525,255 - Shew_0467 0.61 +0.9 525,579 - +0.6
Or see this region's nucleotide sequence