Experiment: Doxycycline hyclate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0278 and Shew_0279 are separated by 43 nucleotides Shew_0279 and Shew_0280 are separated by 207 nucleotides
Shew_0278: Shew_0278 - branched-chain amino acid aminotransferase (RefSeq), at 295,678 to 296,769
_0278
Shew_0279: Shew_0279 - hypothetical protein (RefSeq), at 296,813 to 297,241
_0279
Shew_0280: Shew_0280 - GntR family transcriptional regulator (RefSeq), at 297,449 to 298,150
_0280
Position (kb) 296
297
298 Strain fitness (log2 ratio) -1
0
1 at 295.872 kb on - strand, within Shew_0278 at 295.926 kb on + strand, within Shew_0278 at 295.926 kb on + strand, within Shew_0278 at 296.070 kb on + strand, within Shew_0278 at 296.140 kb on - strand, within Shew_0278 at 296.498 kb on + strand, within Shew_0278 at 296.498 kb on + strand, within Shew_0278 at 296.498 kb on + strand, within Shew_0278 at 296.498 kb on + strand, within Shew_0278 at 296.498 kb on + strand, within Shew_0278 at 296.506 kb on - strand, within Shew_0278 at 296.506 kb on - strand, within Shew_0278 at 296.506 kb on - strand, within Shew_0278 at 296.613 kb on - strand, within Shew_0278 at 296.908 kb on - strand, within Shew_0279 at 297.082 kb on + strand, within Shew_0279 at 297.090 kb on - strand, within Shew_0279 at 297.090 kb on - strand, within Shew_0279 at 297.151 kb on - strand, within Shew_0279 at 297.157 kb on - strand, within Shew_0279 at 297.446 kb on + strand at 297.454 kb on - strand at 297.752 kb on - strand, within Shew_0280 at 297.875 kb on + strand, within Shew_0280 at 297.893 kb on - strand, within Shew_0280 at 298.049 kb on - strand, within Shew_0280
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml remove 295,872 - Shew_0278 0.18 +0.1 295,926 + Shew_0278 0.23 -1.1 295,926 + Shew_0278 0.23 +0.2 296,070 + Shew_0278 0.36 +0.2 296,140 - Shew_0278 0.42 -0.1 296,498 + Shew_0278 0.75 -1.1 296,498 + Shew_0278 0.75 +0.9 296,498 + Shew_0278 0.75 +0.2 296,498 + Shew_0278 0.75 +0.7 296,498 + Shew_0278 0.75 -1.2 296,506 - Shew_0278 0.76 -0.9 296,506 - Shew_0278 0.76 -0.0 296,506 - Shew_0278 0.76 -0.2 296,613 - Shew_0278 0.86 -0.2 296,908 - Shew_0279 0.22 +0.0 297,082 + Shew_0279 0.63 +1.3 297,090 - Shew_0279 0.65 +0.2 297,090 - Shew_0279 0.65 +0.2 297,151 - Shew_0279 0.79 +0.2 297,157 - Shew_0279 0.80 +1.1 297,446 + +1.0 297,454 - -0.1 297,752 - Shew_0280 0.43 +1.0 297,875 + Shew_0280 0.61 -0.7 297,893 - Shew_0280 0.63 -0.1 298,049 - Shew_0280 0.85 -1.1
Or see this region's nucleotide sequence