Experiment: Doxycycline hyclate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0240 and Shew_0241 overlap by 1 nucleotides Shew_0241 and Shew_0242 are separated by 10 nucleotides Shew_0242 and Shew_0243 are separated by 189 nucleotides
Shew_0240: Shew_0240 - cytoplasmic chaperone TorD family protein (RefSeq), at 256,691 to 257,305
_0240
Shew_0241: Shew_0241 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 257,305 to 257,850
_0241
Shew_0242: Shew_0242 - molydopterin dinucleotide-binding region (RefSeq), at 257,861 to 260,074
_0242
Shew_0243: Shew_0243 - LysR family transcriptional regulator (RefSeq), at 260,264 to 261,229
_0243
Position (kb) 257
258
259
260
261 Strain fitness (log2 ratio) -1
0
1
2
3 at 257.060 kb on + strand, within Shew_0240 at 257.281 kb on + strand at 257.567 kb on - strand, within Shew_0241 at 257.567 kb on - strand, within Shew_0241 at 257.584 kb on + strand, within Shew_0241 at 257.806 kb on + strand at 257.814 kb on - strand at 258.004 kb on + strand at 258.012 kb on - strand at 258.070 kb on + strand at 258.070 kb on + strand at 258.362 kb on - strand, within Shew_0242 at 258.403 kb on + strand, within Shew_0242 at 258.403 kb on + strand, within Shew_0242 at 258.411 kb on - strand, within Shew_0242 at 258.424 kb on - strand, within Shew_0242 at 258.484 kb on - strand, within Shew_0242 at 258.493 kb on - strand, within Shew_0242 at 258.493 kb on - strand, within Shew_0242 at 258.602 kb on + strand, within Shew_0242 at 259.080 kb on - strand, within Shew_0242 at 259.089 kb on - strand, within Shew_0242 at 259.089 kb on - strand, within Shew_0242 at 259.235 kb on + strand, within Shew_0242 at 259.568 kb on - strand, within Shew_0242 at 259.630 kb on + strand, within Shew_0242 at 259.738 kb on - strand, within Shew_0242 at 259.994 kb on + strand at 260.215 kb on + strand at 260.335 kb on - strand at 260.545 kb on + strand, within Shew_0243 at 260.591 kb on + strand, within Shew_0243 at 260.642 kb on + strand, within Shew_0243 at 260.710 kb on - strand, within Shew_0243 at 260.765 kb on - strand, within Shew_0243 at 260.893 kb on + strand, within Shew_0243 at 260.953 kb on + strand, within Shew_0243 at 260.962 kb on - strand, within Shew_0243 at 260.998 kb on + strand, within Shew_0243 at 261.022 kb on + strand, within Shew_0243 at 261.038 kb on - strand, within Shew_0243 at 261.057 kb on - strand, within Shew_0243
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml remove 257,060 + Shew_0240 0.60 +2.2 257,281 + +0.9 257,567 - Shew_0241 0.48 +0.2 257,567 - Shew_0241 0.48 -0.1 257,584 + Shew_0241 0.51 -0.0 257,806 + +1.2 257,814 - -0.4 258,004 + +0.1 258,012 - -0.0 258,070 + +0.4 258,070 + +0.3 258,362 - Shew_0242 0.23 -0.1 258,403 + Shew_0242 0.24 +0.8 258,403 + Shew_0242 0.24 -0.2 258,411 - Shew_0242 0.25 -0.1 258,424 - Shew_0242 0.25 -0.1 258,484 - Shew_0242 0.28 +1.0 258,493 - Shew_0242 0.29 -0.0 258,493 - Shew_0242 0.29 +0.3 258,602 + Shew_0242 0.33 +0.1 259,080 - Shew_0242 0.55 +1.3 259,089 - Shew_0242 0.55 -0.3 259,089 - Shew_0242 0.55 +0.6 259,235 + Shew_0242 0.62 -1.2 259,568 - Shew_0242 0.77 +0.3 259,630 + Shew_0242 0.80 +3.6 259,738 - Shew_0242 0.85 -0.2 259,994 + -0.2 260,215 + -0.3 260,335 - -0.4 260,545 + Shew_0243 0.29 +0.6 260,591 + Shew_0243 0.34 +0.4 260,642 + Shew_0243 0.39 -0.9 260,710 - Shew_0243 0.46 -0.0 260,765 - Shew_0243 0.52 +0.1 260,893 + Shew_0243 0.65 +0.8 260,953 + Shew_0243 0.71 -0.0 260,962 - Shew_0243 0.72 +0.1 260,998 + Shew_0243 0.76 -0.1 261,022 + Shew_0243 0.78 +0.7 261,038 - Shew_0243 0.80 +0.9 261,057 - Shew_0243 0.82 +0.4
Or see this region's nucleotide sequence