Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5243

Experiment: perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5242 and Pf6N2E2_5243 overlap by 9 nucleotidesPf6N2E2_5243 and Pf6N2E2_5244 are separated by 558 nucleotidesPf6N2E2_5244 and Pf6N2E2_5245 are separated by 205 nucleotides Pf6N2E2_5242 - Malate:quinone oxidoreductase (EC 1.1.5.4), at 6,038,881 to 6,040,386 _5242 Pf6N2E2_5243 - hypothetical protein, at 6,040,378 to 6,040,566 _5243 Pf6N2E2_5244 - FIG00954931: hypothetical protein, at 6,041,125 to 6,041,358 _5244 Pf6N2E2_5245 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 6,041,564 to 6,042,148 _5245 Position (kb) 6040 6041Strain fitness (log2 ratio) -1 0 1 2at 6039.777 kb on - strand, within Pf6N2E2_5242at 6039.950 kb on + strand, within Pf6N2E2_5242at 6039.951 kb on - strand, within Pf6N2E2_5242at 6039.951 kb on - strand, within Pf6N2E2_5242at 6040.101 kb on - strand, within Pf6N2E2_5242at 6040.101 kb on - strand, within Pf6N2E2_5242at 6040.361 kb on - strandat 6040.428 kb on - strand, within Pf6N2E2_5243at 6040.469 kb on - strand, within Pf6N2E2_5243at 6040.564 kb on + strandat 6040.590 kb on - strandat 6040.694 kb on + strandat 6040.850 kb on - strandat 6040.850 kb on - strandat 6040.850 kb on - strandat 6040.892 kb on - strandat 6041.006 kb on - strandat 6041.051 kb on + strandat 6041.051 kb on + strandat 6041.051 kb on + strandat 6041.052 kb on - strandat 6041.052 kb on - strandat 6041.052 kb on - strandat 6041.053 kb on + strandat 6041.054 kb on - strandat 6041.054 kb on - strandat 6041.101 kb on + strandat 6041.346 kb on + strandat 6041.346 kb on + strandat 6041.346 kb on + strandat 6041.346 kb on + strandat 6041.405 kb on + strandat 6041.420 kb on + strandat 6041.420 kb on + strandat 6041.420 kb on + strandat 6041.420 kb on + strandat 6041.420 kb on + strandat 6041.421 kb on - strandat 6041.421 kb on - strandat 6041.421 kb on - strandat 6041.421 kb on - strandat 6041.481 kb on + strandat 6041.498 kb on + strandat 6041.498 kb on + strandat 6041.498 kb on + strandat 6041.499 kb on - strandat 6041.523 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 50 mM
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6,039,777 - Pf6N2E2_5242 0.59 +2.0
6,039,950 + Pf6N2E2_5242 0.71 +1.8
6,039,951 - Pf6N2E2_5242 0.71 +2.5
6,039,951 - Pf6N2E2_5242 0.71 +2.1
6,040,101 - Pf6N2E2_5242 0.81 +1.7
6,040,101 - Pf6N2E2_5242 0.81 +0.1
6,040,361 - +1.9
6,040,428 - Pf6N2E2_5243 0.26 -0.8
6,040,469 - Pf6N2E2_5243 0.48 -1.0
6,040,564 + -0.6
6,040,590 - -0.8
6,040,694 + +0.7
6,040,850 - -0.1
6,040,850 - -0.3
6,040,850 - +1.4
6,040,892 - +0.6
6,041,006 - +0.6
6,041,051 + +1.2
6,041,051 + +0.6
6,041,051 + +0.8
6,041,052 - -0.1
6,041,052 - -0.0
6,041,052 - +0.7
6,041,053 + +0.8
6,041,054 - +0.6
6,041,054 - -0.0
6,041,101 + -1.0
6,041,346 + -0.0
6,041,346 + +0.2
6,041,346 + +0.2
6,041,346 + -0.2
6,041,405 + +0.0
6,041,420 + -0.5
6,041,420 + -0.6
6,041,420 + -0.4
6,041,420 + +0.4
6,041,420 + -0.1
6,041,421 - -0.5
6,041,421 - -1.2
6,041,421 - -1.2
6,041,421 - -0.3
6,041,481 + -0.1
6,041,498 + -0.6
6,041,498 + +0.3
6,041,498 + -0.1
6,041,499 - +0.3
6,041,523 - -0.2

Or see this region's nucleotide sequence