Experiment: perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5170 and Pf6N2E2_5171 are separated by 220 nucleotides Pf6N2E2_5171 and Pf6N2E2_5172 are separated by 16 nucleotides Pf6N2E2_5172 and Pf6N2E2_5173 overlap by 1 nucleotides
Pf6N2E2_5170 - FIG00955330: hypothetical protein, at 5,957,378 to 5,958,934
_5170
Pf6N2E2_5171 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 5,959,155 to 5,961,371
_5171
Pf6N2E2_5172 - FOG: TPR repeat, at 5,961,388 to 5,962,107
_5172
Pf6N2E2_5173 - Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C), at 5,962,107 to 5,962,436
_5173
Position (kb) 5959
5960
5961
5962 Strain fitness (log2 ratio) -2
-1
0
1 at 5958.198 kb on + strand, within Pf6N2E2_5170 at 5958.198 kb on + strand, within Pf6N2E2_5170 at 5958.198 kb on + strand, within Pf6N2E2_5170 at 5958.199 kb on - strand, within Pf6N2E2_5170 at 5958.630 kb on + strand, within Pf6N2E2_5170 at 5958.630 kb on + strand, within Pf6N2E2_5170 at 5958.630 kb on + strand, within Pf6N2E2_5170 at 5958.689 kb on + strand, within Pf6N2E2_5170 at 5958.689 kb on + strand, within Pf6N2E2_5170 at 5958.689 kb on + strand, within Pf6N2E2_5170 at 5958.689 kb on + strand, within Pf6N2E2_5170 at 5958.690 kb on - strand, within Pf6N2E2_5170 at 5958.702 kb on + strand, within Pf6N2E2_5170 at 5958.703 kb on - strand, within Pf6N2E2_5170 at 5958.703 kb on - strand, within Pf6N2E2_5170 at 5958.816 kb on + strand at 5958.816 kb on + strand at 5958.817 kb on - strand at 5958.817 kb on - strand at 5958.823 kb on - strand at 5958.823 kb on - strand at 5958.839 kb on + strand at 5958.948 kb on + strand at 5958.948 kb on + strand at 5958.948 kb on + strand at 5958.949 kb on - strand at 5958.949 kb on - strand at 5958.949 kb on - strand at 5958.975 kb on - strand at 5959.039 kb on + strand at 5959.041 kb on + strand at 5959.041 kb on + strand at 5959.041 kb on + strand at 5959.042 kb on - strand at 5959.130 kb on + strand at 5959.177 kb on - strand at 5959.239 kb on + strand at 5959.240 kb on - strand at 5959.240 kb on - strand at 5959.404 kb on + strand, within Pf6N2E2_5171 at 5959.405 kb on - strand, within Pf6N2E2_5171 at 5959.405 kb on - strand, within Pf6N2E2_5171 at 5959.405 kb on - strand, within Pf6N2E2_5171 at 5959.405 kb on - strand, within Pf6N2E2_5171 at 5959.455 kb on + strand, within Pf6N2E2_5171 at 5959.455 kb on + strand, within Pf6N2E2_5171 at 5959.629 kb on + strand, within Pf6N2E2_5171 at 5959.629 kb on + strand, within Pf6N2E2_5171 at 5959.629 kb on + strand, within Pf6N2E2_5171 at 5959.629 kb on + strand, within Pf6N2E2_5171 at 5959.629 kb on + strand, within Pf6N2E2_5171 at 5959.629 kb on + strand, within Pf6N2E2_5171 at 5959.629 kb on + strand, within Pf6N2E2_5171 at 5959.629 kb on + strand, within Pf6N2E2_5171 at 5959.630 kb on - strand, within Pf6N2E2_5171 at 5959.630 kb on - strand, within Pf6N2E2_5171 at 5959.682 kb on + strand, within Pf6N2E2_5171 at 5959.682 kb on + strand, within Pf6N2E2_5171 at 5959.683 kb on - strand, within Pf6N2E2_5171 at 5959.683 kb on - strand, within Pf6N2E2_5171 at 5959.683 kb on - strand, within Pf6N2E2_5171 at 5959.683 kb on - strand, within Pf6N2E2_5171 at 5959.683 kb on - strand, within Pf6N2E2_5171 at 5959.746 kb on + strand, within Pf6N2E2_5171 at 5959.746 kb on + strand, within Pf6N2E2_5171 at 5959.747 kb on - strand, within Pf6N2E2_5171 at 5959.747 kb on - strand, within Pf6N2E2_5171 at 5959.818 kb on + strand, within Pf6N2E2_5171 at 5959.845 kb on + strand, within Pf6N2E2_5171 at 5959.845 kb on + strand, within Pf6N2E2_5171 at 5959.846 kb on - strand, within Pf6N2E2_5171 at 5959.858 kb on + strand, within Pf6N2E2_5171 at 5959.858 kb on + strand, within Pf6N2E2_5171 at 5959.858 kb on + strand, within Pf6N2E2_5171 at 5959.858 kb on + strand, within Pf6N2E2_5171 at 5959.858 kb on + strand, within Pf6N2E2_5171 at 5959.858 kb on + strand, within Pf6N2E2_5171 at 5959.859 kb on - strand, within Pf6N2E2_5171 at 5959.859 kb on - strand, within Pf6N2E2_5171 at 5959.859 kb on - strand, within Pf6N2E2_5171 at 5959.859 kb on - strand, within Pf6N2E2_5171 at 5959.862 kb on + strand, within Pf6N2E2_5171 at 5959.995 kb on + strand, within Pf6N2E2_5171 at 5959.995 kb on + strand, within Pf6N2E2_5171 at 5959.995 kb on + strand, within Pf6N2E2_5171 at 5959.995 kb on + strand, within Pf6N2E2_5171 at 5959.995 kb on + strand, within Pf6N2E2_5171 at 5959.995 kb on + strand, within Pf6N2E2_5171 at 5959.995 kb on + strand, within Pf6N2E2_5171 at 5959.995 kb on + strand, within Pf6N2E2_5171 at 5959.995 kb on + strand, within Pf6N2E2_5171 at 5959.996 kb on - strand, within Pf6N2E2_5171 at 5959.996 kb on - strand, within Pf6N2E2_5171 at 5959.996 kb on - strand, within Pf6N2E2_5171 at 5959.996 kb on - strand, within Pf6N2E2_5171 at 5959.996 kb on - strand, within Pf6N2E2_5171 at 5959.996 kb on - strand, within Pf6N2E2_5171 at 5959.996 kb on - strand, within Pf6N2E2_5171 at 5960.469 kb on + strand, within Pf6N2E2_5171 at 5960.469 kb on + strand, within Pf6N2E2_5171 at 5960.499 kb on + strand, within Pf6N2E2_5171 at 5960.499 kb on + strand, within Pf6N2E2_5171 at 5960.500 kb on - strand, within Pf6N2E2_5171 at 5960.500 kb on - strand, within Pf6N2E2_5171 at 5960.577 kb on + strand, within Pf6N2E2_5171 at 5960.577 kb on + strand, within Pf6N2E2_5171 at 5960.577 kb on + strand, within Pf6N2E2_5171 at 5960.577 kb on + strand, within Pf6N2E2_5171 at 5960.578 kb on - strand, within Pf6N2E2_5171 at 5960.578 kb on - strand, within Pf6N2E2_5171 at 5960.578 kb on - strand, within Pf6N2E2_5171 at 5960.578 kb on - strand, within Pf6N2E2_5171 at 5960.578 kb on - strand, within Pf6N2E2_5171 at 5960.578 kb on - strand, within Pf6N2E2_5171 at 5960.578 kb on - strand, within Pf6N2E2_5171 at 5960.578 kb on - strand, within Pf6N2E2_5171 at 5960.578 kb on - strand, within Pf6N2E2_5171 at 5960.578 kb on - strand, within Pf6N2E2_5171 at 5960.631 kb on + strand, within Pf6N2E2_5171 at 5960.631 kb on + strand, within Pf6N2E2_5171 at 5960.631 kb on + strand, within Pf6N2E2_5171 at 5960.631 kb on + strand, within Pf6N2E2_5171 at 5960.631 kb on + strand, within Pf6N2E2_5171 at 5960.631 kb on + strand, within Pf6N2E2_5171 at 5960.631 kb on + strand, within Pf6N2E2_5171 at 5960.631 kb on + strand, within Pf6N2E2_5171 at 5960.631 kb on + strand, within Pf6N2E2_5171 at 5960.632 kb on - strand, within Pf6N2E2_5171 at 5960.632 kb on - strand, within Pf6N2E2_5171 at 5960.680 kb on + strand, within Pf6N2E2_5171 at 5960.759 kb on - strand, within Pf6N2E2_5171 at 5960.784 kb on + strand, within Pf6N2E2_5171 at 5960.784 kb on + strand, within Pf6N2E2_5171 at 5960.784 kb on + strand, within Pf6N2E2_5171 at 5960.784 kb on + strand, within Pf6N2E2_5171 at 5960.784 kb on + strand, within Pf6N2E2_5171 at 5960.785 kb on - strand, within Pf6N2E2_5171 at 5960.813 kb on + strand, within Pf6N2E2_5171 at 5960.814 kb on - strand, within Pf6N2E2_5171 at 5960.970 kb on + strand, within Pf6N2E2_5171 at 5960.970 kb on + strand, within Pf6N2E2_5171 at 5960.970 kb on + strand, within Pf6N2E2_5171 at 5960.970 kb on + strand, within Pf6N2E2_5171 at 5960.970 kb on + strand, within Pf6N2E2_5171 at 5960.971 kb on - strand, within Pf6N2E2_5171 at 5961.276 kb on + strand at 5961.276 kb on + strand at 5961.276 kb on + strand at 5961.277 kb on - strand at 5961.277 kb on - strand at 5961.278 kb on + strand at 5961.279 kb on - strand at 5961.369 kb on + strand at 5961.369 kb on + strand at 5961.369 kb on + strand at 5961.369 kb on + strand at 5961.369 kb on + strand at 5961.370 kb on - strand at 5961.370 kb on - strand at 5961.444 kb on + strand at 5961.444 kb on + strand at 5961.445 kb on - strand at 5961.449 kb on + strand at 5961.449 kb on + strand at 5961.449 kb on + strand at 5961.715 kb on + strand, within Pf6N2E2_5172 at 5961.715 kb on + strand, within Pf6N2E2_5172 at 5961.715 kb on + strand, within Pf6N2E2_5172 at 5961.716 kb on - strand, within Pf6N2E2_5172 at 5961.716 kb on - strand, within Pf6N2E2_5172 at 5961.716 kb on - strand, within Pf6N2E2_5172 at 5962.293 kb on - strand, within Pf6N2E2_5173 at 5962.356 kb on + strand, within Pf6N2E2_5173 at 5962.356 kb on + strand, within Pf6N2E2_5173 at 5962.357 kb on - strand, within Pf6N2E2_5173 at 5962.357 kb on - strand, within Pf6N2E2_5173 at 5962.357 kb on - strand, within Pf6N2E2_5173 at 5962.357 kb on - strand, within Pf6N2E2_5173
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 50 mM remove 5,958,198 + Pf6N2E2_5170 0.53 -0.6 5,958,198 + Pf6N2E2_5170 0.53 -0.1 5,958,198 + Pf6N2E2_5170 0.53 +0.1 5,958,199 - Pf6N2E2_5170 0.53 +0.6 5,958,630 + Pf6N2E2_5170 0.80 +0.0 5,958,630 + Pf6N2E2_5170 0.80 -0.0 5,958,630 + Pf6N2E2_5170 0.80 -0.2 5,958,689 + Pf6N2E2_5170 0.84 +0.2 5,958,689 + Pf6N2E2_5170 0.84 +0.2 5,958,689 + Pf6N2E2_5170 0.84 +0.1 5,958,689 + Pf6N2E2_5170 0.84 +0.6 5,958,690 - Pf6N2E2_5170 0.84 +0.1 5,958,702 + Pf6N2E2_5170 0.85 +0.3 5,958,703 - Pf6N2E2_5170 0.85 -0.6 5,958,703 - Pf6N2E2_5170 0.85 +0.4 5,958,816 + +0.0 5,958,816 + +1.0 5,958,817 - +0.6 5,958,817 - -0.1 5,958,823 - +1.1 5,958,823 - -0.9 5,958,839 + +0.3 5,958,948 + +0.2 5,958,948 + +0.2 5,958,948 + +0.1 5,958,949 - +0.0 5,958,949 - -0.4 5,958,949 - -0.2 5,958,975 - +0.1 5,959,039 + -0.2 5,959,041 + +0.2 5,959,041 + +0.3 5,959,041 + -0.7 5,959,042 - +0.2 5,959,130 + -1.4 5,959,177 - +0.8 5,959,239 + -0.7 5,959,240 - +0.4 5,959,240 - -1.1 5,959,404 + Pf6N2E2_5171 0.11 -0.1 5,959,405 - Pf6N2E2_5171 0.11 -1.0 5,959,405 - Pf6N2E2_5171 0.11 -1.1 5,959,405 - Pf6N2E2_5171 0.11 -1.1 5,959,405 - Pf6N2E2_5171 0.11 -0.9 5,959,455 + Pf6N2E2_5171 0.14 -1.4 5,959,455 + Pf6N2E2_5171 0.14 -1.0 5,959,629 + Pf6N2E2_5171 0.21 -1.6 5,959,629 + Pf6N2E2_5171 0.21 -1.0 5,959,629 + Pf6N2E2_5171 0.21 -1.1 5,959,629 + Pf6N2E2_5171 0.21 -1.4 5,959,629 + Pf6N2E2_5171 0.21 -1.6 5,959,629 + Pf6N2E2_5171 0.21 -0.5 5,959,629 + Pf6N2E2_5171 0.21 +0.1 5,959,629 + Pf6N2E2_5171 0.21 +0.9 5,959,630 - Pf6N2E2_5171 0.21 -0.7 5,959,630 - Pf6N2E2_5171 0.21 +0.1 5,959,682 + Pf6N2E2_5171 0.24 -1.8 5,959,682 + Pf6N2E2_5171 0.24 -0.3 5,959,683 - Pf6N2E2_5171 0.24 -2.2 5,959,683 - Pf6N2E2_5171 0.24 -0.8 5,959,683 - Pf6N2E2_5171 0.24 -1.1 5,959,683 - Pf6N2E2_5171 0.24 -1.0 5,959,683 - Pf6N2E2_5171 0.24 -1.0 5,959,746 + Pf6N2E2_5171 0.27 -1.3 5,959,746 + Pf6N2E2_5171 0.27 -2.4 5,959,747 - Pf6N2E2_5171 0.27 -0.8 5,959,747 - Pf6N2E2_5171 0.27 -0.7 5,959,818 + Pf6N2E2_5171 0.30 -1.5 5,959,845 + Pf6N2E2_5171 0.31 +1.3 5,959,845 + Pf6N2E2_5171 0.31 -0.8 5,959,846 - Pf6N2E2_5171 0.31 -0.5 5,959,858 + Pf6N2E2_5171 0.32 -0.0 5,959,858 + Pf6N2E2_5171 0.32 -1.6 5,959,858 + Pf6N2E2_5171 0.32 -1.3 5,959,858 + Pf6N2E2_5171 0.32 -1.5 5,959,858 + Pf6N2E2_5171 0.32 -0.5 5,959,858 + Pf6N2E2_5171 0.32 -0.2 5,959,859 - Pf6N2E2_5171 0.32 -1.8 5,959,859 - Pf6N2E2_5171 0.32 -1.1 5,959,859 - Pf6N2E2_5171 0.32 -1.1 5,959,859 - Pf6N2E2_5171 0.32 -0.9 5,959,862 + Pf6N2E2_5171 0.32 -1.7 5,959,995 + Pf6N2E2_5171 0.38 -1.3 5,959,995 + Pf6N2E2_5171 0.38 -1.5 5,959,995 + Pf6N2E2_5171 0.38 -0.5 5,959,995 + Pf6N2E2_5171 0.38 -1.8 5,959,995 + Pf6N2E2_5171 0.38 +0.0 5,959,995 + Pf6N2E2_5171 0.38 -0.0 5,959,995 + Pf6N2E2_5171 0.38 +0.4 5,959,995 + Pf6N2E2_5171 0.38 -2.4 5,959,995 + Pf6N2E2_5171 0.38 -2.0 5,959,996 - Pf6N2E2_5171 0.38 -0.1 5,959,996 - Pf6N2E2_5171 0.38 -1.6 5,959,996 - Pf6N2E2_5171 0.38 -1.4 5,959,996 - Pf6N2E2_5171 0.38 -1.1 5,959,996 - Pf6N2E2_5171 0.38 -0.3 5,959,996 - Pf6N2E2_5171 0.38 -1.4 5,959,996 - Pf6N2E2_5171 0.38 -0.8 5,960,469 + Pf6N2E2_5171 0.59 -2.2 5,960,469 + Pf6N2E2_5171 0.59 -1.9 5,960,499 + Pf6N2E2_5171 0.61 -1.1 5,960,499 + Pf6N2E2_5171 0.61 -1.1 5,960,500 - Pf6N2E2_5171 0.61 -0.1 5,960,500 - Pf6N2E2_5171 0.61 -0.7 5,960,577 + Pf6N2E2_5171 0.64 -1.3 5,960,577 + Pf6N2E2_5171 0.64 -1.2 5,960,577 + Pf6N2E2_5171 0.64 -0.4 5,960,577 + Pf6N2E2_5171 0.64 -0.7 5,960,578 - Pf6N2E2_5171 0.64 -1.1 5,960,578 - Pf6N2E2_5171 0.64 -0.8 5,960,578 - Pf6N2E2_5171 0.64 -1.1 5,960,578 - Pf6N2E2_5171 0.64 +0.3 5,960,578 - Pf6N2E2_5171 0.64 -1.7 5,960,578 - Pf6N2E2_5171 0.64 -1.4 5,960,578 - Pf6N2E2_5171 0.64 -2.4 5,960,578 - Pf6N2E2_5171 0.64 -0.8 5,960,578 - Pf6N2E2_5171 0.64 -2.0 5,960,578 - Pf6N2E2_5171 0.64 -1.3 5,960,631 + Pf6N2E2_5171 0.67 -0.9 5,960,631 + Pf6N2E2_5171 0.67 -1.5 5,960,631 + Pf6N2E2_5171 0.67 -2.3 5,960,631 + Pf6N2E2_5171 0.67 -1.1 5,960,631 + Pf6N2E2_5171 0.67 -0.9 5,960,631 + Pf6N2E2_5171 0.67 -0.7 5,960,631 + Pf6N2E2_5171 0.67 -1.2 5,960,631 + Pf6N2E2_5171 0.67 -0.9 5,960,631 + Pf6N2E2_5171 0.67 -2.4 5,960,632 - Pf6N2E2_5171 0.67 -1.0 5,960,632 - Pf6N2E2_5171 0.67 -0.7 5,960,680 + Pf6N2E2_5171 0.69 -0.7 5,960,759 - Pf6N2E2_5171 0.72 -0.9 5,960,784 + Pf6N2E2_5171 0.73 -1.2 5,960,784 + Pf6N2E2_5171 0.73 -1.8 5,960,784 + Pf6N2E2_5171 0.73 -0.9 5,960,784 + Pf6N2E2_5171 0.73 -0.8 5,960,784 + Pf6N2E2_5171 0.73 -0.8 5,960,785 - Pf6N2E2_5171 0.74 +0.2 5,960,813 + Pf6N2E2_5171 0.75 -0.9 5,960,814 - Pf6N2E2_5171 0.75 -0.8 5,960,970 + Pf6N2E2_5171 0.82 -1.1 5,960,970 + Pf6N2E2_5171 0.82 -0.6 5,960,970 + Pf6N2E2_5171 0.82 -2.3 5,960,970 + Pf6N2E2_5171 0.82 -0.8 5,960,970 + Pf6N2E2_5171 0.82 -0.8 5,960,971 - Pf6N2E2_5171 0.82 -1.6 5,961,276 + -1.9 5,961,276 + -1.2 5,961,276 + -1.0 5,961,277 - -1.7 5,961,277 - -0.0 5,961,278 + +0.0 5,961,279 - -2.7 5,961,369 + +0.6 5,961,369 + +1.1 5,961,369 + +0.4 5,961,369 + -0.9 5,961,369 + -0.3 5,961,370 - -0.2 5,961,370 - +0.0 5,961,444 + -1.7 5,961,444 + -0.9 5,961,445 - -0.6 5,961,449 + -0.2 5,961,449 + +0.1 5,961,449 + -0.6 5,961,715 + Pf6N2E2_5172 0.45 -0.7 5,961,715 + Pf6N2E2_5172 0.45 -0.1 5,961,715 + Pf6N2E2_5172 0.45 -0.4 5,961,716 - Pf6N2E2_5172 0.46 -0.1 5,961,716 - Pf6N2E2_5172 0.46 +0.1 5,961,716 - Pf6N2E2_5172 0.46 -0.6 5,962,293 - Pf6N2E2_5173 0.56 +0.1 5,962,356 + Pf6N2E2_5173 0.75 -0.1 5,962,356 + Pf6N2E2_5173 0.75 +0.9 5,962,357 - Pf6N2E2_5173 0.76 +0.4 5,962,357 - Pf6N2E2_5173 0.76 -0.1 5,962,357 - Pf6N2E2_5173 0.76 -0.0 5,962,357 - Pf6N2E2_5173 0.76 +0.6
Or see this region's nucleotide sequence