Experiment: perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4554 and Pf6N2E2_4555 are separated by 108 nucleotides Pf6N2E2_4555 and Pf6N2E2_4556 are separated by 96 nucleotides Pf6N2E2_4556 and Pf6N2E2_4557 are separated by 141 nucleotides
Pf6N2E2_4554 - Thiol-disulfide isomerase and thioredoxins, at 5,283,674 to 5,284,249
_4554
Pf6N2E2_4555 - Lysophospholipase (EC 3.1.1.5), at 5,284,358 to 5,285,305
_4555
Pf6N2E2_4556 - FIG00953078: hypothetical protein, at 5,285,402 to 5,286,145
_4556
Pf6N2E2_4557 - oxidoreductase, 2OG-Fe(II) oxygenase family, at 5,286,287 to 5,286,919
_4557
Position (kb) 5284
5285
5286 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5283.376 kb on - strand at 5283.376 kb on - strand at 5283.378 kb on + strand at 5283.379 kb on - strand at 5283.404 kb on - strand at 5283.416 kb on - strand at 5283.461 kb on - strand at 5283.583 kb on + strand at 5283.583 kb on + strand at 5283.583 kb on + strand at 5283.583 kb on + strand at 5283.601 kb on + strand at 5283.614 kb on + strand at 5283.614 kb on + strand at 5283.614 kb on + strand at 5283.614 kb on + strand at 5283.614 kb on + strand at 5283.615 kb on - strand at 5283.615 kb on - strand at 5283.655 kb on - strand at 5283.664 kb on - strand at 5283.667 kb on + strand at 5283.730 kb on + strand at 5283.731 kb on - strand at 5283.811 kb on - strand, within Pf6N2E2_4554 at 5283.822 kb on + strand, within Pf6N2E2_4554 at 5283.964 kb on - strand, within Pf6N2E2_4554 at 5283.983 kb on + strand, within Pf6N2E2_4554 at 5283.983 kb on + strand, within Pf6N2E2_4554 at 5283.983 kb on + strand, within Pf6N2E2_4554 at 5283.983 kb on + strand, within Pf6N2E2_4554 at 5283.987 kb on + strand, within Pf6N2E2_4554 at 5283.987 kb on + strand, within Pf6N2E2_4554 at 5283.987 kb on + strand, within Pf6N2E2_4554 at 5283.987 kb on + strand, within Pf6N2E2_4554 at 5283.987 kb on + strand, within Pf6N2E2_4554 at 5283.987 kb on + strand, within Pf6N2E2_4554 at 5283.987 kb on + strand, within Pf6N2E2_4554 at 5283.987 kb on + strand, within Pf6N2E2_4554 at 5283.987 kb on + strand, within Pf6N2E2_4554 at 5283.987 kb on + strand, within Pf6N2E2_4554 at 5283.987 kb on + strand, within Pf6N2E2_4554 at 5283.987 kb on + strand, within Pf6N2E2_4554 at 5283.987 kb on + strand, within Pf6N2E2_4554 at 5283.987 kb on + strand, within Pf6N2E2_4554 at 5283.987 kb on + strand, within Pf6N2E2_4554 at 5283.988 kb on - strand, within Pf6N2E2_4554 at 5283.988 kb on - strand, within Pf6N2E2_4554 at 5283.988 kb on - strand, within Pf6N2E2_4554 at 5283.988 kb on - strand, within Pf6N2E2_4554 at 5283.988 kb on - strand, within Pf6N2E2_4554 at 5283.988 kb on - strand, within Pf6N2E2_4554 at 5283.988 kb on - strand, within Pf6N2E2_4554 at 5283.988 kb on - strand, within Pf6N2E2_4554 at 5283.988 kb on - strand, within Pf6N2E2_4554 at 5283.988 kb on - strand, within Pf6N2E2_4554 at 5283.988 kb on - strand, within Pf6N2E2_4554 at 5283.988 kb on - strand, within Pf6N2E2_4554 at 5283.988 kb on - strand, within Pf6N2E2_4554 at 5283.988 kb on - strand, within Pf6N2E2_4554 at 5283.988 kb on - strand, within Pf6N2E2_4554 at 5283.988 kb on - strand, within Pf6N2E2_4554 at 5283.991 kb on + strand, within Pf6N2E2_4554 at 5284.068 kb on - strand, within Pf6N2E2_4554 at 5284.173 kb on + strand, within Pf6N2E2_4554 at 5284.187 kb on + strand, within Pf6N2E2_4554 at 5284.273 kb on + strand at 5284.274 kb on - strand at 5284.304 kb on - strand at 5284.341 kb on + strand at 5284.458 kb on - strand, within Pf6N2E2_4555 at 5284.458 kb on - strand, within Pf6N2E2_4555 at 5284.520 kb on + strand, within Pf6N2E2_4555 at 5284.520 kb on + strand, within Pf6N2E2_4555 at 5284.587 kb on - strand, within Pf6N2E2_4555 at 5284.589 kb on + strand, within Pf6N2E2_4555 at 5284.589 kb on + strand, within Pf6N2E2_4555 at 5284.590 kb on - strand, within Pf6N2E2_4555 at 5284.721 kb on + strand, within Pf6N2E2_4555 at 5284.925 kb on + strand, within Pf6N2E2_4555 at 5284.925 kb on + strand, within Pf6N2E2_4555 at 5284.926 kb on - strand, within Pf6N2E2_4555 at 5284.926 kb on - strand, within Pf6N2E2_4555 at 5284.926 kb on - strand, within Pf6N2E2_4555 at 5284.926 kb on - strand, within Pf6N2E2_4555 at 5284.926 kb on - strand, within Pf6N2E2_4555 at 5284.926 kb on - strand, within Pf6N2E2_4555 at 5284.928 kb on + strand, within Pf6N2E2_4555 at 5284.928 kb on + strand, within Pf6N2E2_4555 at 5284.928 kb on + strand, within Pf6N2E2_4555 at 5284.928 kb on + strand, within Pf6N2E2_4555 at 5284.929 kb on - strand, within Pf6N2E2_4555 at 5284.929 kb on - strand, within Pf6N2E2_4555 at 5284.929 kb on - strand, within Pf6N2E2_4555 at 5285.032 kb on - strand, within Pf6N2E2_4555 at 5285.081 kb on - strand, within Pf6N2E2_4555 at 5285.081 kb on - strand, within Pf6N2E2_4555 at 5285.313 kb on - strand at 5285.313 kb on - strand at 5285.347 kb on - strand at 5285.347 kb on - strand at 5285.403 kb on + strand at 5285.404 kb on - strand at 5285.463 kb on + strand at 5285.466 kb on + strand at 5285.466 kb on + strand at 5285.467 kb on - strand at 5285.467 kb on - strand at 5285.467 kb on - strand at 5285.467 kb on - strand at 5285.541 kb on + strand, within Pf6N2E2_4556 at 5285.541 kb on + strand, within Pf6N2E2_4556 at 5285.541 kb on + strand, within Pf6N2E2_4556 at 5285.542 kb on - strand, within Pf6N2E2_4556 at 5285.542 kb on - strand, within Pf6N2E2_4556 at 5285.542 kb on - strand, within Pf6N2E2_4556 at 5286.004 kb on - strand, within Pf6N2E2_4556 at 5286.072 kb on + strand at 5286.072 kb on + strand at 5286.072 kb on + strand at 5286.072 kb on + strand at 5286.073 kb on - strand at 5286.073 kb on - strand at 5286.073 kb on - strand at 5286.073 kb on - strand at 5286.084 kb on + strand at 5286.085 kb on - strand at 5286.085 kb on - strand at 5286.085 kb on - strand at 5286.085 kb on - strand at 5286.085 kb on - strand at 5286.170 kb on - strand at 5286.170 kb on - strand at 5286.170 kb on - strand at 5286.207 kb on - strand at 5286.228 kb on + strand at 5286.229 kb on - strand at 5286.229 kb on - strand at 5286.283 kb on + strand at 5286.283 kb on + strand at 5286.283 kb on + strand at 5286.283 kb on + strand at 5286.283 kb on + strand at 5286.283 kb on + strand at 5286.283 kb on + strand at 5286.283 kb on + strand at 5286.283 kb on + strand at 5286.284 kb on - strand at 5286.284 kb on - strand at 5286.284 kb on - strand at 5286.284 kb on - strand at 5286.284 kb on - strand at 5286.284 kb on - strand at 5286.284 kb on - strand at 5286.284 kb on - strand at 5286.284 kb on - strand at 5286.284 kb on - strand at 5286.286 kb on + strand at 5286.287 kb on - strand at 5286.287 kb on - strand at 5286.287 kb on - strand at 5286.287 kb on - strand at 5286.287 kb on - strand at 5286.303 kb on + strand at 5286.303 kb on + strand at 5286.304 kb on - strand at 5286.304 kb on - strand at 5286.304 kb on - strand at 5286.304 kb on - strand at 5286.304 kb on - strand at 5286.304 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 50 mM remove 5,283,376 - -0.1 5,283,376 - -0.1 5,283,378 + +0.1 5,283,379 - -0.7 5,283,404 - +0.8 5,283,416 - -0.3 5,283,461 - -0.0 5,283,583 + -0.1 5,283,583 + -0.5 5,283,583 + +0.3 5,283,583 + +0.1 5,283,601 + +0.9 5,283,614 + +0.0 5,283,614 + -0.9 5,283,614 + +0.1 5,283,614 + +0.3 5,283,614 + +0.1 5,283,615 - +0.6 5,283,615 - +0.4 5,283,655 - +0.6 5,283,664 - +0.4 5,283,667 + -0.0 5,283,730 + -0.0 5,283,731 - +0.1 5,283,811 - Pf6N2E2_4554 0.24 +0.4 5,283,822 + Pf6N2E2_4554 0.26 -0.0 5,283,964 - Pf6N2E2_4554 0.50 -0.3 5,283,983 + Pf6N2E2_4554 0.54 -1.1 5,283,983 + Pf6N2E2_4554 0.54 +0.8 5,283,983 + Pf6N2E2_4554 0.54 +0.1 5,283,983 + Pf6N2E2_4554 0.54 -0.0 5,283,987 + Pf6N2E2_4554 0.54 -0.1 5,283,987 + Pf6N2E2_4554 0.54 -0.0 5,283,987 + Pf6N2E2_4554 0.54 +0.6 5,283,987 + Pf6N2E2_4554 0.54 +0.4 5,283,987 + Pf6N2E2_4554 0.54 +1.5 5,283,987 + Pf6N2E2_4554 0.54 +0.3 5,283,987 + Pf6N2E2_4554 0.54 +0.2 5,283,987 + Pf6N2E2_4554 0.54 -0.3 5,283,987 + Pf6N2E2_4554 0.54 +0.4 5,283,987 + Pf6N2E2_4554 0.54 +0.3 5,283,987 + Pf6N2E2_4554 0.54 -0.1 5,283,987 + Pf6N2E2_4554 0.54 -0.2 5,283,987 + Pf6N2E2_4554 0.54 -0.4 5,283,987 + Pf6N2E2_4554 0.54 +0.3 5,283,987 + Pf6N2E2_4554 0.54 +0.2 5,283,988 - Pf6N2E2_4554 0.55 -0.6 5,283,988 - Pf6N2E2_4554 0.55 +0.5 5,283,988 - Pf6N2E2_4554 0.55 +0.5 5,283,988 - Pf6N2E2_4554 0.55 +0.4 5,283,988 - Pf6N2E2_4554 0.55 +0.5 5,283,988 - Pf6N2E2_4554 0.55 +0.4 5,283,988 - Pf6N2E2_4554 0.55 -0.1 5,283,988 - Pf6N2E2_4554 0.55 -0.2 5,283,988 - Pf6N2E2_4554 0.55 +0.5 5,283,988 - Pf6N2E2_4554 0.55 +0.3 5,283,988 - Pf6N2E2_4554 0.55 -0.2 5,283,988 - Pf6N2E2_4554 0.55 +0.2 5,283,988 - Pf6N2E2_4554 0.55 -0.5 5,283,988 - Pf6N2E2_4554 0.55 -0.6 5,283,988 - Pf6N2E2_4554 0.55 -0.6 5,283,988 - Pf6N2E2_4554 0.55 -0.1 5,283,991 + Pf6N2E2_4554 0.55 +1.1 5,284,068 - Pf6N2E2_4554 0.68 -0.4 5,284,173 + Pf6N2E2_4554 0.87 +0.2 5,284,187 + Pf6N2E2_4554 0.89 +0.2 5,284,273 + -0.1 5,284,274 - +0.6 5,284,304 - -0.6 5,284,341 + -0.0 5,284,458 - Pf6N2E2_4555 0.11 +0.8 5,284,458 - Pf6N2E2_4555 0.11 +0.3 5,284,520 + Pf6N2E2_4555 0.17 -0.2 5,284,520 + Pf6N2E2_4555 0.17 +0.0 5,284,587 - Pf6N2E2_4555 0.24 +0.8 5,284,589 + Pf6N2E2_4555 0.24 +0.2 5,284,589 + Pf6N2E2_4555 0.24 +0.1 5,284,590 - Pf6N2E2_4555 0.24 +0.0 5,284,721 + Pf6N2E2_4555 0.38 -0.2 5,284,925 + Pf6N2E2_4555 0.60 -0.7 5,284,925 + Pf6N2E2_4555 0.60 +0.2 5,284,926 - Pf6N2E2_4555 0.60 +0.4 5,284,926 - Pf6N2E2_4555 0.60 +0.1 5,284,926 - Pf6N2E2_4555 0.60 +0.6 5,284,926 - Pf6N2E2_4555 0.60 +0.9 5,284,926 - Pf6N2E2_4555 0.60 -0.4 5,284,926 - Pf6N2E2_4555 0.60 +0.4 5,284,928 + Pf6N2E2_4555 0.60 +0.3 5,284,928 + Pf6N2E2_4555 0.60 +0.1 5,284,928 + Pf6N2E2_4555 0.60 -0.2 5,284,928 + Pf6N2E2_4555 0.60 -0.6 5,284,929 - Pf6N2E2_4555 0.60 +0.2 5,284,929 - Pf6N2E2_4555 0.60 -0.7 5,284,929 - Pf6N2E2_4555 0.60 +0.2 5,285,032 - Pf6N2E2_4555 0.71 +0.7 5,285,081 - Pf6N2E2_4555 0.76 +0.1 5,285,081 - Pf6N2E2_4555 0.76 +1.2 5,285,313 - +0.4 5,285,313 - -0.3 5,285,347 - +0.5 5,285,347 - -0.3 5,285,403 + +0.1 5,285,404 - -0.8 5,285,463 + -0.8 5,285,466 + -1.2 5,285,466 + -0.9 5,285,467 - -2.8 5,285,467 - -1.6 5,285,467 - -1.0 5,285,467 - -0.8 5,285,541 + Pf6N2E2_4556 0.19 -1.1 5,285,541 + Pf6N2E2_4556 0.19 -0.8 5,285,541 + Pf6N2E2_4556 0.19 -0.6 5,285,542 - Pf6N2E2_4556 0.19 -1.6 5,285,542 - Pf6N2E2_4556 0.19 -1.3 5,285,542 - Pf6N2E2_4556 0.19 -0.0 5,286,004 - Pf6N2E2_4556 0.81 -0.7 5,286,072 + -2.0 5,286,072 + -0.7 5,286,072 + -1.8 5,286,072 + -0.5 5,286,073 - -0.1 5,286,073 - +0.1 5,286,073 - +0.6 5,286,073 - -0.1 5,286,084 + -0.8 5,286,085 - -1.0 5,286,085 - -2.0 5,286,085 - -2.0 5,286,085 - -1.4 5,286,085 - +0.4 5,286,170 - +0.2 5,286,170 - -0.8 5,286,170 - +0.2 5,286,207 - +0.5 5,286,228 + -0.3 5,286,229 - +0.1 5,286,229 - +0.1 5,286,283 + -0.5 5,286,283 + -0.4 5,286,283 + -1.1 5,286,283 + -0.6 5,286,283 + -0.6 5,286,283 + -0.2 5,286,283 + +0.5 5,286,283 + -0.8 5,286,283 + +0.4 5,286,284 - +0.6 5,286,284 - +0.4 5,286,284 - -0.0 5,286,284 - -1.3 5,286,284 - +0.0 5,286,284 - +0.8 5,286,284 - +0.0 5,286,284 - +0.6 5,286,284 - +0.2 5,286,284 - +0.2 5,286,286 + -0.2 5,286,287 - +0.0 5,286,287 - -0.2 5,286,287 - +1.0 5,286,287 - +0.5 5,286,287 - +0.5 5,286,303 + -1.5 5,286,303 + +0.4 5,286,304 - -0.0 5,286,304 - -0.2 5,286,304 - +1.0 5,286,304 - -0.1 5,286,304 - -0.3 5,286,304 - +0.2
Or see this region's nucleotide sequence