Experiment: perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3855 and Pf6N2E2_3856 are separated by 13 nucleotides Pf6N2E2_3856 and Pf6N2E2_3857 are separated by 78 nucleotides Pf6N2E2_3857 and Pf6N2E2_3858 overlap by 4 nucleotides
Pf6N2E2_3855 - Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1), at 4,487,517 to 4,488,290
_3855
Pf6N2E2_3856 - Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1), at 4,488,304 to 4,489,059
_3856
Pf6N2E2_3857 - Arginine ABC transporter, permease protein ArtQ, at 4,489,138 to 4,489,833
_3857
Pf6N2E2_3858 - Amino acid ABC transporter, permease protein, at 4,489,830 to 4,490,519
_3858
Position (kb)
4488
4489
4490 Strain fitness (log2 ratio)
-2
-1
0
1 at 4487.328 kb on - strand at 4487.413 kb on - strand at 4487.452 kb on + strand at 4487.452 kb on + strand at 4487.452 kb on + strand at 4487.453 kb on - strand at 4487.453 kb on - strand at 4487.453 kb on - strand at 4487.453 kb on - strand at 4487.500 kb on + strand at 4487.500 kb on + strand at 4487.500 kb on + strand at 4487.500 kb on + strand at 4487.501 kb on - strand at 4487.501 kb on - strand at 4487.501 kb on - strand at 4487.501 kb on - strand at 4487.501 kb on - strand at 4487.501 kb on - strand at 4487.501 kb on - strand at 4487.840 kb on + strand, within Pf6N2E2_3855 at 4487.840 kb on + strand, within Pf6N2E2_3855 at 4487.840 kb on + strand, within Pf6N2E2_3855 at 4487.840 kb on + strand, within Pf6N2E2_3855 at 4487.841 kb on - strand, within Pf6N2E2_3855 at 4487.841 kb on - strand, within Pf6N2E2_3855 at 4487.841 kb on - strand, within Pf6N2E2_3855 at 4488.091 kb on + strand, within Pf6N2E2_3855 at 4488.091 kb on + strand, within Pf6N2E2_3855 at 4488.091 kb on + strand, within Pf6N2E2_3855 at 4488.092 kb on - strand, within Pf6N2E2_3855 at 4488.092 kb on - strand, within Pf6N2E2_3855 at 4488.092 kb on - strand, within Pf6N2E2_3855 at 4488.092 kb on - strand, within Pf6N2E2_3855 at 4488.092 kb on - strand, within Pf6N2E2_3855 at 4488.092 kb on - strand, within Pf6N2E2_3855 at 4488.095 kb on + strand, within Pf6N2E2_3855 at 4488.095 kb on + strand, within Pf6N2E2_3855 at 4488.095 kb on + strand, within Pf6N2E2_3855 at 4488.095 kb on + strand, within Pf6N2E2_3855 at 4488.095 kb on + strand, within Pf6N2E2_3855 at 4488.095 kb on + strand, within Pf6N2E2_3855 at 4488.095 kb on + strand, within Pf6N2E2_3855 at 4488.096 kb on - strand, within Pf6N2E2_3855 at 4488.096 kb on - strand, within Pf6N2E2_3855 at 4488.096 kb on - strand, within Pf6N2E2_3855 at 4488.096 kb on - strand, within Pf6N2E2_3855 at 4488.096 kb on - strand, within Pf6N2E2_3855 at 4488.096 kb on - strand, within Pf6N2E2_3855 at 4488.096 kb on - strand, within Pf6N2E2_3855 at 4488.096 kb on - strand, within Pf6N2E2_3855 at 4488.096 kb on - strand, within Pf6N2E2_3855 at 4488.096 kb on - strand, within Pf6N2E2_3855 at 4488.299 kb on + strand at 4488.299 kb on + strand at 4488.300 kb on - strand at 4488.300 kb on - strand at 4488.300 kb on - strand at 4488.300 kb on - strand at 4488.300 kb on - strand at 4488.300 kb on - strand at 4488.300 kb on - strand at 4488.300 kb on - strand at 4488.300 kb on - strand at 4488.300 kb on - strand at 4488.300 kb on - strand at 4488.300 kb on - strand at 4488.313 kb on + strand at 4488.313 kb on + strand at 4488.313 kb on + strand at 4488.313 kb on + strand at 4488.314 kb on - strand at 4488.314 kb on - strand at 4488.314 kb on - strand at 4488.314 kb on - strand at 4488.628 kb on + strand, within Pf6N2E2_3856 at 4488.628 kb on + strand, within Pf6N2E2_3856 at 4488.629 kb on - strand, within Pf6N2E2_3856 at 4488.724 kb on - strand, within Pf6N2E2_3856 at 4488.781 kb on + strand, within Pf6N2E2_3856 at 4488.782 kb on - strand, within Pf6N2E2_3856 at 4488.850 kb on + strand, within Pf6N2E2_3856 at 4488.850 kb on + strand, within Pf6N2E2_3856 at 4488.851 kb on - strand, within Pf6N2E2_3856 at 4488.851 kb on - strand, within Pf6N2E2_3856 at 4488.851 kb on - strand, within Pf6N2E2_3856 at 4488.851 kb on - strand, within Pf6N2E2_3856 at 4488.851 kb on - strand, within Pf6N2E2_3856 at 4488.859 kb on + strand, within Pf6N2E2_3856 at 4488.859 kb on + strand, within Pf6N2E2_3856 at 4488.859 kb on + strand, within Pf6N2E2_3856 at 4488.860 kb on - strand, within Pf6N2E2_3856 at 4488.893 kb on - strand, within Pf6N2E2_3856 at 4489.011 kb on + strand at 4489.012 kb on - strand at 4489.012 kb on - strand at 4489.012 kb on - strand at 4489.015 kb on + strand at 4489.015 kb on + strand at 4489.015 kb on + strand at 4489.016 kb on - strand at 4489.016 kb on - strand at 4489.016 kb on - strand at 4489.017 kb on + strand at 4489.017 kb on + strand at 4489.017 kb on + strand at 4489.036 kb on + strand at 4489.050 kb on + strand at 4489.050 kb on + strand at 4489.054 kb on + strand at 4489.054 kb on + strand at 4489.054 kb on + strand at 4489.054 kb on + strand at 4489.054 kb on + strand at 4489.054 kb on + strand at 4489.054 kb on + strand at 4489.054 kb on + strand at 4489.054 kb on + strand at 4489.054 kb on + strand at 4489.054 kb on + strand at 4489.054 kb on + strand at 4489.055 kb on - strand at 4489.055 kb on - strand at 4489.055 kb on - strand at 4489.055 kb on - strand at 4489.055 kb on - strand at 4489.055 kb on - strand at 4489.055 kb on - strand at 4489.060 kb on + strand at 4489.060 kb on + strand at 4489.061 kb on - strand at 4489.124 kb on - strand at 4489.270 kb on + strand, within Pf6N2E2_3857 at 4489.270 kb on + strand, within Pf6N2E2_3857 at 4489.300 kb on + strand, within Pf6N2E2_3857 at 4489.300 kb on + strand, within Pf6N2E2_3857 at 4489.300 kb on + strand, within Pf6N2E2_3857 at 4489.301 kb on - strand, within Pf6N2E2_3857 at 4489.351 kb on + strand, within Pf6N2E2_3857 at 4489.351 kb on + strand, within Pf6N2E2_3857 at 4489.351 kb on + strand, within Pf6N2E2_3857 at 4489.351 kb on + strand, within Pf6N2E2_3857 at 4489.352 kb on - strand, within Pf6N2E2_3857 at 4489.352 kb on - strand, within Pf6N2E2_3857 at 4489.352 kb on - strand, within Pf6N2E2_3857 at 4489.465 kb on + strand, within Pf6N2E2_3857 at 4489.726 kb on + strand, within Pf6N2E2_3857 at 4489.726 kb on + strand, within Pf6N2E2_3857 at 4489.726 kb on + strand, within Pf6N2E2_3857 at 4489.726 kb on + strand, within Pf6N2E2_3857 at 4489.726 kb on + strand, within Pf6N2E2_3857 at 4489.726 kb on + strand, within Pf6N2E2_3857 at 4489.726 kb on + strand, within Pf6N2E2_3857 at 4489.726 kb on + strand, within Pf6N2E2_3857 at 4489.726 kb on + strand, within Pf6N2E2_3857 at 4489.726 kb on + strand, within Pf6N2E2_3857 at 4489.726 kb on + strand, within Pf6N2E2_3857 at 4489.726 kb on + strand, within Pf6N2E2_3857 at 4489.726 kb on + strand, within Pf6N2E2_3857 at 4489.726 kb on + strand, within Pf6N2E2_3857 at 4489.726 kb on + strand, within Pf6N2E2_3857 at 4489.727 kb on - strand, within Pf6N2E2_3857 at 4489.727 kb on - strand, within Pf6N2E2_3857 at 4489.727 kb on - strand, within Pf6N2E2_3857 at 4489.727 kb on - strand, within Pf6N2E2_3857 at 4489.727 kb on - strand, within Pf6N2E2_3857 at 4489.727 kb on - strand, within Pf6N2E2_3857 at 4489.727 kb on - strand, within Pf6N2E2_3857 at 4489.727 kb on - strand, within Pf6N2E2_3857 at 4489.727 kb on - strand, within Pf6N2E2_3857 at 4489.727 kb on - strand, within Pf6N2E2_3857 at 4489.727 kb on - strand, within Pf6N2E2_3857 at 4489.727 kb on - strand, within Pf6N2E2_3857 at 4489.727 kb on - strand, within Pf6N2E2_3857 at 4489.727 kb on - strand, within Pf6N2E2_3857 at 4489.727 kb on - strand, within Pf6N2E2_3857 at 4489.727 kb on - strand, within Pf6N2E2_3857 at 4489.727 kb on - strand, within Pf6N2E2_3857 at 4489.729 kb on - strand, within Pf6N2E2_3857 at 4489.729 kb on - strand, within Pf6N2E2_3857 at 4489.747 kb on + strand, within Pf6N2E2_3857 at 4489.747 kb on + strand, within Pf6N2E2_3857 at 4489.748 kb on - strand, within Pf6N2E2_3857 at 4489.748 kb on - strand, within Pf6N2E2_3857 at 4489.748 kb on - strand, within Pf6N2E2_3857 at 4489.748 kb on - strand, within Pf6N2E2_3857 at 4489.824 kb on + strand at 4489.989 kb on + strand, within Pf6N2E2_3858 at 4489.990 kb on - strand, within Pf6N2E2_3858 at 4489.995 kb on + strand, within Pf6N2E2_3858 at 4489.995 kb on + strand, within Pf6N2E2_3858 at 4489.995 kb on + strand, within Pf6N2E2_3858 at 4489.995 kb on + strand, within Pf6N2E2_3858 at 4489.995 kb on + strand, within Pf6N2E2_3858 at 4489.995 kb on + strand, within Pf6N2E2_3858 at 4489.995 kb on + strand, within Pf6N2E2_3858 at 4489.995 kb on + strand, within Pf6N2E2_3858 at 4489.995 kb on + strand, within Pf6N2E2_3858 at 4489.995 kb on + strand, within Pf6N2E2_3858 at 4489.996 kb on - strand, within Pf6N2E2_3858 at 4489.996 kb on - strand, within Pf6N2E2_3858 at 4489.996 kb on - strand, within Pf6N2E2_3858 at 4489.996 kb on - strand, within Pf6N2E2_3858 at 4489.996 kb on - strand, within Pf6N2E2_3858 at 4489.996 kb on - strand, within Pf6N2E2_3858 at 4489.996 kb on - strand, within Pf6N2E2_3858 at 4489.996 kb on - strand, within Pf6N2E2_3858 at 4489.996 kb on - strand, within Pf6N2E2_3858 at 4489.996 kb on - strand, within Pf6N2E2_3858 at 4489.996 kb on - strand, within Pf6N2E2_3858 at 4489.996 kb on - strand, within Pf6N2E2_3858 at 4489.996 kb on - strand, within Pf6N2E2_3858 at 4489.996 kb on - strand, within Pf6N2E2_3858 at 4490.046 kb on + strand, within Pf6N2E2_3858 at 4490.046 kb on + strand, within Pf6N2E2_3858 at 4490.047 kb on - strand, within Pf6N2E2_3858 at 4490.050 kb on - strand, within Pf6N2E2_3858 at 4490.050 kb on - strand, within Pf6N2E2_3858
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 50 mM remove 4,487,328 - +0.2 4,487,413 - +0.2 4,487,452 + -0.3 4,487,452 + +0.0 4,487,452 + -0.4 4,487,453 - -0.6 4,487,453 - +0.8 4,487,453 - -0.1 4,487,453 - -0.3 4,487,500 + -0.4 4,487,500 + +0.3 4,487,500 + -0.9 4,487,500 + +0.8 4,487,501 - -0.1 4,487,501 - -0.6 4,487,501 - +0.3 4,487,501 - -0.5 4,487,501 - -1.8 4,487,501 - -0.5 4,487,501 - -0.4 4,487,840 + Pf6N2E2_3855 0.42 -1.8 4,487,840 + Pf6N2E2_3855 0.42 -0.2 4,487,840 + Pf6N2E2_3855 0.42 +0.0 4,487,840 + Pf6N2E2_3855 0.42 -0.4 4,487,841 - Pf6N2E2_3855 0.42 -0.1 4,487,841 - Pf6N2E2_3855 0.42 -0.1 4,487,841 - Pf6N2E2_3855 0.42 -0.4 4,488,091 + Pf6N2E2_3855 0.74 -0.5 4,488,091 + Pf6N2E2_3855 0.74 -0.4 4,488,091 + Pf6N2E2_3855 0.74 +0.2 4,488,092 - Pf6N2E2_3855 0.74 -0.6 4,488,092 - Pf6N2E2_3855 0.74 -0.3 4,488,092 - Pf6N2E2_3855 0.74 -1.1 4,488,092 - Pf6N2E2_3855 0.74 -0.4 4,488,092 - Pf6N2E2_3855 0.74 -0.1 4,488,092 - Pf6N2E2_3855 0.74 -0.7 4,488,095 + Pf6N2E2_3855 0.75 -0.1 4,488,095 + Pf6N2E2_3855 0.75 -0.2 4,488,095 + Pf6N2E2_3855 0.75 +0.1 4,488,095 + Pf6N2E2_3855 0.75 -0.2 4,488,095 + Pf6N2E2_3855 0.75 -1.1 4,488,095 + Pf6N2E2_3855 0.75 -2.0 4,488,095 + Pf6N2E2_3855 0.75 -0.3 4,488,096 - Pf6N2E2_3855 0.75 +0.7 4,488,096 - Pf6N2E2_3855 0.75 +0.1 4,488,096 - Pf6N2E2_3855 0.75 -0.2 4,488,096 - Pf6N2E2_3855 0.75 -0.9 4,488,096 - Pf6N2E2_3855 0.75 -0.2 4,488,096 - Pf6N2E2_3855 0.75 -0.0 4,488,096 - Pf6N2E2_3855 0.75 +0.1 4,488,096 - Pf6N2E2_3855 0.75 -0.0 4,488,096 - Pf6N2E2_3855 0.75 -0.2 4,488,096 - Pf6N2E2_3855 0.75 -0.3 4,488,299 + -0.2 4,488,299 + -0.2 4,488,300 - -0.4 4,488,300 - -0.3 4,488,300 - -0.4 4,488,300 - -0.5 4,488,300 - -0.1 4,488,300 - +0.3 4,488,300 - -0.3 4,488,300 - -0.4 4,488,300 - +0.4 4,488,300 - -0.3 4,488,300 - -0.1 4,488,300 - -1.0 4,488,313 + -0.9 4,488,313 + -0.9 4,488,313 + +0.2 4,488,313 + -0.9 4,488,314 - -0.4 4,488,314 - -0.4 4,488,314 - -1.2 4,488,314 - -0.1 4,488,628 + Pf6N2E2_3856 0.43 -0.4 4,488,628 + Pf6N2E2_3856 0.43 -0.7 4,488,629 - Pf6N2E2_3856 0.43 +0.2 4,488,724 - Pf6N2E2_3856 0.56 -0.3 4,488,781 + Pf6N2E2_3856 0.63 -1.0 4,488,782 - Pf6N2E2_3856 0.63 +0.8 4,488,850 + Pf6N2E2_3856 0.72 +0.0 4,488,850 + Pf6N2E2_3856 0.72 +0.2 4,488,851 - Pf6N2E2_3856 0.72 -0.1 4,488,851 - Pf6N2E2_3856 0.72 -1.0 4,488,851 - Pf6N2E2_3856 0.72 -1.2 4,488,851 - Pf6N2E2_3856 0.72 -1.2 4,488,851 - Pf6N2E2_3856 0.72 -0.5 4,488,859 + Pf6N2E2_3856 0.73 -0.9 4,488,859 + Pf6N2E2_3856 0.73 -0.4 4,488,859 + Pf6N2E2_3856 0.73 -0.8 4,488,860 - Pf6N2E2_3856 0.74 -0.5 4,488,893 - Pf6N2E2_3856 0.78 -1.6 4,489,011 + -0.0 4,489,012 - -0.9 4,489,012 - -0.8 4,489,012 - -0.4 4,489,015 + +0.1 4,489,015 + -0.9 4,489,015 + -0.3 4,489,016 - -0.3 4,489,016 - -0.3 4,489,016 - -1.0 4,489,017 + -0.6 4,489,017 + +1.1 4,489,017 + +0.1 4,489,036 + -1.2 4,489,050 + +0.0 4,489,050 + +0.0 4,489,054 + +0.8 4,489,054 + -0.1 4,489,054 + +0.5 4,489,054 + -0.4 4,489,054 + -0.6 4,489,054 + -0.1 4,489,054 + -0.4 4,489,054 + -0.7 4,489,054 + -0.3 4,489,054 + -0.0 4,489,054 + -0.3 4,489,054 + +0.2 4,489,055 - -0.4 4,489,055 - -0.5 4,489,055 - +0.3 4,489,055 - -0.1 4,489,055 - -0.2 4,489,055 - +0.1 4,489,055 - -0.3 4,489,060 + -0.0 4,489,060 + -0.4 4,489,061 - -0.7 4,489,124 - +0.1 4,489,270 + Pf6N2E2_3857 0.19 -0.6 4,489,270 + Pf6N2E2_3857 0.19 -0.4 4,489,300 + Pf6N2E2_3857 0.23 -0.6 4,489,300 + Pf6N2E2_3857 0.23 -0.4 4,489,300 + Pf6N2E2_3857 0.23 +0.2 4,489,301 - Pf6N2E2_3857 0.23 -0.1 4,489,351 + Pf6N2E2_3857 0.31 -0.5 4,489,351 + Pf6N2E2_3857 0.31 +0.9 4,489,351 + Pf6N2E2_3857 0.31 +0.7 4,489,351 + Pf6N2E2_3857 0.31 -0.2 4,489,352 - Pf6N2E2_3857 0.31 +0.2 4,489,352 - Pf6N2E2_3857 0.31 -0.5 4,489,352 - Pf6N2E2_3857 0.31 -0.8 4,489,465 + Pf6N2E2_3857 0.47 +0.6 4,489,726 + Pf6N2E2_3857 0.84 -0.2 4,489,726 + Pf6N2E2_3857 0.84 -0.8 4,489,726 + Pf6N2E2_3857 0.84 +0.1 4,489,726 + Pf6N2E2_3857 0.84 +0.3 4,489,726 + Pf6N2E2_3857 0.84 +0.9 4,489,726 + Pf6N2E2_3857 0.84 -0.1 4,489,726 + Pf6N2E2_3857 0.84 -0.0 4,489,726 + Pf6N2E2_3857 0.84 -0.4 4,489,726 + Pf6N2E2_3857 0.84 -0.5 4,489,726 + Pf6N2E2_3857 0.84 +0.2 4,489,726 + Pf6N2E2_3857 0.84 -1.4 4,489,726 + Pf6N2E2_3857 0.84 -0.1 4,489,726 + Pf6N2E2_3857 0.84 +0.9 4,489,726 + Pf6N2E2_3857 0.84 -0.1 4,489,726 + Pf6N2E2_3857 0.84 -0.2 4,489,727 - Pf6N2E2_3857 0.85 +0.1 4,489,727 - Pf6N2E2_3857 0.85 -0.4 4,489,727 - Pf6N2E2_3857 0.85 -0.5 4,489,727 - Pf6N2E2_3857 0.85 -0.4 4,489,727 - Pf6N2E2_3857 0.85 +0.3 4,489,727 - Pf6N2E2_3857 0.85 -0.2 4,489,727 - Pf6N2E2_3857 0.85 +0.1 4,489,727 - Pf6N2E2_3857 0.85 -0.6 4,489,727 - Pf6N2E2_3857 0.85 +0.1 4,489,727 - Pf6N2E2_3857 0.85 -0.4 4,489,727 - Pf6N2E2_3857 0.85 -0.4 4,489,727 - Pf6N2E2_3857 0.85 +0.4 4,489,727 - Pf6N2E2_3857 0.85 +0.3 4,489,727 - Pf6N2E2_3857 0.85 -0.3 4,489,727 - Pf6N2E2_3857 0.85 +0.4 4,489,727 - Pf6N2E2_3857 0.85 -0.8 4,489,727 - Pf6N2E2_3857 0.85 -0.1 4,489,729 - Pf6N2E2_3857 0.85 -0.4 4,489,729 - Pf6N2E2_3857 0.85 +0.3 4,489,747 + Pf6N2E2_3857 0.88 +0.3 4,489,747 + Pf6N2E2_3857 0.88 -0.4 4,489,748 - Pf6N2E2_3857 0.88 +0.3 4,489,748 - Pf6N2E2_3857 0.88 -0.2 4,489,748 - Pf6N2E2_3857 0.88 -0.5 4,489,748 - Pf6N2E2_3857 0.88 +0.2 4,489,824 + -0.2 4,489,989 + Pf6N2E2_3858 0.23 -0.8 4,489,990 - Pf6N2E2_3858 0.23 +0.1 4,489,995 + Pf6N2E2_3858 0.24 -0.6 4,489,995 + Pf6N2E2_3858 0.24 +0.6 4,489,995 + Pf6N2E2_3858 0.24 -0.8 4,489,995 + Pf6N2E2_3858 0.24 -1.8 4,489,995 + Pf6N2E2_3858 0.24 -0.2 4,489,995 + Pf6N2E2_3858 0.24 +0.2 4,489,995 + Pf6N2E2_3858 0.24 +0.5 4,489,995 + Pf6N2E2_3858 0.24 +1.0 4,489,995 + Pf6N2E2_3858 0.24 -0.0 4,489,995 + Pf6N2E2_3858 0.24 -2.7 4,489,996 - Pf6N2E2_3858 0.24 -0.4 4,489,996 - Pf6N2E2_3858 0.24 -0.4 4,489,996 - Pf6N2E2_3858 0.24 +0.6 4,489,996 - Pf6N2E2_3858 0.24 -0.1 4,489,996 - Pf6N2E2_3858 0.24 +0.1 4,489,996 - Pf6N2E2_3858 0.24 -1.3 4,489,996 - Pf6N2E2_3858 0.24 -0.3 4,489,996 - Pf6N2E2_3858 0.24 +0.1 4,489,996 - Pf6N2E2_3858 0.24 -0.2 4,489,996 - Pf6N2E2_3858 0.24 -0.1 4,489,996 - Pf6N2E2_3858 0.24 -0.4 4,489,996 - Pf6N2E2_3858 0.24 +0.1 4,489,996 - Pf6N2E2_3858 0.24 -0.1 4,489,996 - Pf6N2E2_3858 0.24 +0.3 4,490,046 + Pf6N2E2_3858 0.31 +0.6 4,490,046 + Pf6N2E2_3858 0.31 -0.7 4,490,047 - Pf6N2E2_3858 0.31 -0.5 4,490,050 - Pf6N2E2_3858 0.32 +0.1 4,490,050 - Pf6N2E2_3858 0.32 +0.6
Or see this region's nucleotide sequence