Experiment: perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3712 and Pf6N2E2_3713 are separated by 9 nucleotides Pf6N2E2_3713 and Pf6N2E2_3714 overlap by 4 nucleotides Pf6N2E2_3714 and Pf6N2E2_3715 overlap by 4 nucleotides Pf6N2E2_3715 and Pf6N2E2_3716 are separated by 146 nucleotides Pf6N2E2_3716 and Pf6N2E2_3717 overlap by 4 nucleotides
Pf6N2E2_3712 - Acyl carrier protein (ACP1), at 4,326,719 to 4,326,979
_3712
Pf6N2E2_3713 - Acyl carrier protein, at 4,326,989 to 4,327,243
_3713
Pf6N2E2_3714 - FIG017861: hypothetical protein, at 4,327,240 to 4,327,785
_3714
Pf6N2E2_3715 - FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase / (3R)-hydroxymyristoyl-[ACP] dehydratase (EC 4.2.1.-), at 4,327,782 to 4,329,461
_3715
Pf6N2E2_3716 - FIG143263: Glycosyl transferase, at 4,329,608 to 4,330,342
_3716
Pf6N2E2_3717 - Lysophospholipid acyltransferase, at 4,330,339 to 4,331,283
_3717
Position (kb) 4327
4328
4329
4330 Strain fitness (log2 ratio) -2
-1
0
1 at 4326.858 kb on + strand, within Pf6N2E2_3712 at 4326.882 kb on - strand, within Pf6N2E2_3712 at 4326.894 kb on + strand, within Pf6N2E2_3712 at 4327.007 kb on - strand at 4327.086 kb on - strand, within Pf6N2E2_3713 at 4327.135 kb on + strand, within Pf6N2E2_3713 at 4327.135 kb on + strand, within Pf6N2E2_3713 at 4327.136 kb on - strand, within Pf6N2E2_3713 at 4327.300 kb on + strand, within Pf6N2E2_3714 at 4327.528 kb on + strand, within Pf6N2E2_3714 at 4327.597 kb on + strand, within Pf6N2E2_3714 at 4327.597 kb on + strand, within Pf6N2E2_3714 at 4327.597 kb on + strand, within Pf6N2E2_3714 at 4327.598 kb on - strand, within Pf6N2E2_3714 at 4327.598 kb on - strand, within Pf6N2E2_3714 at 4327.598 kb on - strand, within Pf6N2E2_3714 at 4327.599 kb on + strand, within Pf6N2E2_3714 at 4327.599 kb on + strand, within Pf6N2E2_3714 at 4327.600 kb on - strand, within Pf6N2E2_3714 at 4327.641 kb on + strand, within Pf6N2E2_3714 at 4327.700 kb on - strand, within Pf6N2E2_3714 at 4327.700 kb on - strand, within Pf6N2E2_3714 at 4327.770 kb on - strand at 4328.215 kb on + strand, within Pf6N2E2_3715 at 4328.215 kb on + strand, within Pf6N2E2_3715 at 4328.216 kb on - strand, within Pf6N2E2_3715 at 4328.216 kb on - strand, within Pf6N2E2_3715 at 4328.304 kb on + strand, within Pf6N2E2_3715 at 4328.305 kb on - strand, within Pf6N2E2_3715 at 4328.305 kb on - strand, within Pf6N2E2_3715 at 4328.695 kb on - strand, within Pf6N2E2_3715 at 4328.764 kb on + strand, within Pf6N2E2_3715 at 4328.794 kb on + strand, within Pf6N2E2_3715 at 4328.794 kb on + strand, within Pf6N2E2_3715 at 4328.795 kb on - strand, within Pf6N2E2_3715 at 4328.795 kb on - strand, within Pf6N2E2_3715 at 4328.795 kb on - strand, within Pf6N2E2_3715 at 4329.390 kb on + strand at 4329.391 kb on - strand at 4329.391 kb on - strand at 4329.439 kb on + strand at 4329.439 kb on + strand at 4329.440 kb on - strand at 4329.440 kb on - strand at 4329.440 kb on - strand at 4329.440 kb on - strand at 4329.459 kb on + strand at 4329.460 kb on - strand at 4329.528 kb on + strand at 4329.528 kb on + strand at 4329.529 kb on - strand at 4329.639 kb on - strand at 4329.639 kb on - strand at 4329.966 kb on - strand, within Pf6N2E2_3716 at 4329.996 kb on - strand, within Pf6N2E2_3716 at 4329.996 kb on - strand, within Pf6N2E2_3716 at 4330.038 kb on + strand, within Pf6N2E2_3716 at 4330.038 kb on + strand, within Pf6N2E2_3716 at 4330.039 kb on - strand, within Pf6N2E2_3716 at 4330.434 kb on - strand, within Pf6N2E2_3717
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 50 mM remove 4,326,858 + Pf6N2E2_3712 0.53 -0.1 4,326,882 - Pf6N2E2_3712 0.62 -0.5 4,326,894 + Pf6N2E2_3712 0.67 -0.0 4,327,007 - -0.2 4,327,086 - Pf6N2E2_3713 0.38 -0.3 4,327,135 + Pf6N2E2_3713 0.57 -0.4 4,327,135 + Pf6N2E2_3713 0.57 +1.2 4,327,136 - Pf6N2E2_3713 0.58 -1.1 4,327,300 + Pf6N2E2_3714 0.11 +0.2 4,327,528 + Pf6N2E2_3714 0.53 +0.2 4,327,597 + Pf6N2E2_3714 0.65 -0.0 4,327,597 + Pf6N2E2_3714 0.65 +0.2 4,327,597 + Pf6N2E2_3714 0.65 -2.1 4,327,598 - Pf6N2E2_3714 0.66 -0.1 4,327,598 - Pf6N2E2_3714 0.66 +0.2 4,327,598 - Pf6N2E2_3714 0.66 +0.8 4,327,599 + Pf6N2E2_3714 0.66 -0.3 4,327,599 + Pf6N2E2_3714 0.66 +0.0 4,327,600 - Pf6N2E2_3714 0.66 -1.2 4,327,641 + Pf6N2E2_3714 0.73 -0.0 4,327,700 - Pf6N2E2_3714 0.84 -0.4 4,327,700 - Pf6N2E2_3714 0.84 +0.6 4,327,770 - -0.3 4,328,215 + Pf6N2E2_3715 0.26 -0.8 4,328,215 + Pf6N2E2_3715 0.26 -0.4 4,328,216 - Pf6N2E2_3715 0.26 -0.9 4,328,216 - Pf6N2E2_3715 0.26 -0.9 4,328,304 + Pf6N2E2_3715 0.31 -0.4 4,328,305 - Pf6N2E2_3715 0.31 +0.2 4,328,305 - Pf6N2E2_3715 0.31 -0.2 4,328,695 - Pf6N2E2_3715 0.54 -1.2 4,328,764 + Pf6N2E2_3715 0.58 -1.5 4,328,794 + Pf6N2E2_3715 0.60 +0.0 4,328,794 + Pf6N2E2_3715 0.60 -0.5 4,328,795 - Pf6N2E2_3715 0.60 -0.5 4,328,795 - Pf6N2E2_3715 0.60 -1.4 4,328,795 - Pf6N2E2_3715 0.60 -0.9 4,329,390 + +0.1 4,329,391 - +0.1 4,329,391 - +0.1 4,329,439 + +0.7 4,329,439 + +0.4 4,329,440 - -0.1 4,329,440 - -1.0 4,329,440 - +0.2 4,329,440 - +0.1 4,329,459 + -0.1 4,329,460 - -0.2 4,329,528 + +0.2 4,329,528 + +0.2 4,329,529 - -0.7 4,329,639 - -0.0 4,329,639 - +0.1 4,329,966 - Pf6N2E2_3716 0.49 -0.2 4,329,996 - Pf6N2E2_3716 0.53 -0.2 4,329,996 - Pf6N2E2_3716 0.53 +0.2 4,330,038 + Pf6N2E2_3716 0.59 +0.2 4,330,038 + Pf6N2E2_3716 0.59 -0.5 4,330,039 - Pf6N2E2_3716 0.59 -0.3 4,330,434 - Pf6N2E2_3717 0.10 -0.3
Or see this region's nucleotide sequence