Experiment: perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3496 and Pf6N2E2_3497 are separated by 12 nucleotides Pf6N2E2_3497 and Pf6N2E2_3498 overlap by 4 nucleotides Pf6N2E2_3498 and Pf6N2E2_3499 are separated by 164 nucleotides Pf6N2E2_3499 and Pf6N2E2_3500 are separated by 236 nucleotides
Pf6N2E2_3496 - lipoprotein, putative, at 4,077,682 to 4,078,299
_3496
Pf6N2E2_3497 - 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64), at 4,078,312 to 4,079,061
_3497
Pf6N2E2_3498 - FIG00953349: hypothetical protein, at 4,079,058 to 4,079,363
_3498
Pf6N2E2_3499 - Permeases of the major facilitator superfamily, at 4,079,528 to 4,079,821
_3499
Pf6N2E2_3500 - DNA-damage-inducible protein F, at 4,080,058 to 4,081,407
_3500
Position (kb)
4079
4080 Strain fitness (log2 ratio)
-1
0
1 at 4078.142 kb on + strand, within Pf6N2E2_3496 at 4078.143 kb on - strand, within Pf6N2E2_3496 at 4078.232 kb on + strand, within Pf6N2E2_3496 at 4078.232 kb on + strand, within Pf6N2E2_3496 at 4078.233 kb on - strand, within Pf6N2E2_3496 at 4078.233 kb on - strand, within Pf6N2E2_3496 at 4078.340 kb on + strand at 4078.341 kb on - strand at 4078.341 kb on - strand at 4078.341 kb on - strand at 4078.437 kb on + strand, within Pf6N2E2_3497 at 4078.437 kb on + strand, within Pf6N2E2_3497 at 4078.437 kb on + strand, within Pf6N2E2_3497 at 4078.437 kb on + strand, within Pf6N2E2_3497 at 4078.438 kb on - strand, within Pf6N2E2_3497 at 4078.438 kb on - strand, within Pf6N2E2_3497 at 4078.438 kb on - strand, within Pf6N2E2_3497 at 4078.438 kb on - strand, within Pf6N2E2_3497 at 4078.438 kb on - strand, within Pf6N2E2_3497 at 4078.438 kb on - strand, within Pf6N2E2_3497 at 4078.439 kb on + strand, within Pf6N2E2_3497 at 4078.439 kb on + strand, within Pf6N2E2_3497 at 4078.439 kb on + strand, within Pf6N2E2_3497 at 4078.439 kb on + strand, within Pf6N2E2_3497 at 4078.439 kb on + strand, within Pf6N2E2_3497 at 4078.439 kb on + strand, within Pf6N2E2_3497 at 4078.439 kb on + strand, within Pf6N2E2_3497 at 4078.439 kb on + strand, within Pf6N2E2_3497 at 4078.439 kb on + strand, within Pf6N2E2_3497 at 4078.439 kb on + strand, within Pf6N2E2_3497 at 4078.439 kb on + strand, within Pf6N2E2_3497 at 4078.440 kb on - strand, within Pf6N2E2_3497 at 4078.440 kb on - strand, within Pf6N2E2_3497 at 4078.440 kb on - strand, within Pf6N2E2_3497 at 4078.440 kb on - strand, within Pf6N2E2_3497 at 4078.440 kb on - strand, within Pf6N2E2_3497 at 4078.440 kb on - strand, within Pf6N2E2_3497 at 4078.440 kb on - strand, within Pf6N2E2_3497 at 4078.440 kb on - strand, within Pf6N2E2_3497 at 4078.440 kb on - strand, within Pf6N2E2_3497 at 4078.440 kb on - strand, within Pf6N2E2_3497 at 4078.440 kb on - strand, within Pf6N2E2_3497 at 4078.440 kb on - strand, within Pf6N2E2_3497 at 4078.440 kb on - strand, within Pf6N2E2_3497 at 4078.440 kb on - strand, within Pf6N2E2_3497 at 4078.440 kb on - strand, within Pf6N2E2_3497 at 4078.440 kb on - strand, within Pf6N2E2_3497 at 4078.440 kb on - strand, within Pf6N2E2_3497 at 4078.440 kb on - strand, within Pf6N2E2_3497 at 4078.608 kb on - strand, within Pf6N2E2_3497 at 4078.628 kb on + strand, within Pf6N2E2_3497 at 4078.629 kb on - strand, within Pf6N2E2_3497 at 4078.739 kb on + strand, within Pf6N2E2_3497 at 4078.739 kb on + strand, within Pf6N2E2_3497 at 4078.739 kb on + strand, within Pf6N2E2_3497 at 4078.740 kb on - strand, within Pf6N2E2_3497 at 4079.010 kb on - strand at 4079.149 kb on + strand, within Pf6N2E2_3498 at 4079.149 kb on + strand, within Pf6N2E2_3498 at 4079.150 kb on - strand, within Pf6N2E2_3498 at 4079.150 kb on - strand, within Pf6N2E2_3498 at 4079.384 kb on + strand at 4079.384 kb on + strand at 4079.385 kb on - strand at 4079.475 kb on + strand at 4079.727 kb on - strand, within Pf6N2E2_3499 at 4079.727 kb on - strand, within Pf6N2E2_3499 at 4079.727 kb on - strand, within Pf6N2E2_3499 at 4079.820 kb on - strand at 4079.820 kb on - strand at 4079.820 kb on - strand at 4079.869 kb on + strand at 4079.869 kb on + strand at 4079.869 kb on + strand at 4079.940 kb on + strand at 4079.940 kb on + strand at 4079.940 kb on + strand at 4079.940 kb on + strand at 4079.940 kb on + strand at 4079.940 kb on + strand at 4079.940 kb on + strand at 4079.940 kb on + strand at 4079.940 kb on + strand at 4079.941 kb on - strand at 4079.941 kb on - strand at 4079.941 kb on - strand at 4079.941 kb on - strand at 4079.941 kb on - strand at 4079.941 kb on - strand at 4079.941 kb on - strand at 4079.941 kb on - strand at 4079.941 kb on - strand at 4079.941 kb on - strand at 4079.941 kb on - strand at 4079.942 kb on + strand at 4079.942 kb on + strand at 4079.942 kb on + strand at 4079.943 kb on - strand at 4079.943 kb on - strand at 4079.943 kb on - strand at 4079.943 kb on - strand at 4079.943 kb on - strand at 4079.943 kb on - strand at 4079.971 kb on + strand at 4080.031 kb on - strand at 4080.174 kb on + strand at 4080.238 kb on + strand, within Pf6N2E2_3500 at 4080.239 kb on - strand, within Pf6N2E2_3500 at 4080.239 kb on - strand, within Pf6N2E2_3500 at 4080.239 kb on - strand, within Pf6N2E2_3500 at 4080.240 kb on + strand, within Pf6N2E2_3500
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 50 mM remove 4,078,142 + Pf6N2E2_3496 0.74 -0.9 4,078,143 - Pf6N2E2_3496 0.75 +0.3 4,078,232 + Pf6N2E2_3496 0.89 -0.3 4,078,232 + Pf6N2E2_3496 0.89 +0.8 4,078,233 - Pf6N2E2_3496 0.89 -0.1 4,078,233 - Pf6N2E2_3496 0.89 +0.1 4,078,340 + -0.8 4,078,341 - +0.6 4,078,341 - -0.2 4,078,341 - +0.2 4,078,437 + Pf6N2E2_3497 0.17 -0.5 4,078,437 + Pf6N2E2_3497 0.17 +0.2 4,078,437 + Pf6N2E2_3497 0.17 -0.0 4,078,437 + Pf6N2E2_3497 0.17 +0.5 4,078,438 - Pf6N2E2_3497 0.17 -0.7 4,078,438 - Pf6N2E2_3497 0.17 -0.9 4,078,438 - Pf6N2E2_3497 0.17 +0.4 4,078,438 - Pf6N2E2_3497 0.17 +0.2 4,078,438 - Pf6N2E2_3497 0.17 -0.3 4,078,438 - Pf6N2E2_3497 0.17 +0.2 4,078,439 + Pf6N2E2_3497 0.17 +0.8 4,078,439 + Pf6N2E2_3497 0.17 -0.1 4,078,439 + Pf6N2E2_3497 0.17 +0.0 4,078,439 + Pf6N2E2_3497 0.17 +0.5 4,078,439 + Pf6N2E2_3497 0.17 -0.6 4,078,439 + Pf6N2E2_3497 0.17 -0.4 4,078,439 + Pf6N2E2_3497 0.17 +0.3 4,078,439 + Pf6N2E2_3497 0.17 -0.1 4,078,439 + Pf6N2E2_3497 0.17 -0.6 4,078,439 + Pf6N2E2_3497 0.17 +0.5 4,078,439 + Pf6N2E2_3497 0.17 +0.3 4,078,440 - Pf6N2E2_3497 0.17 +0.1 4,078,440 - Pf6N2E2_3497 0.17 -0.4 4,078,440 - Pf6N2E2_3497 0.17 -0.3 4,078,440 - Pf6N2E2_3497 0.17 +0.5 4,078,440 - Pf6N2E2_3497 0.17 +0.1 4,078,440 - Pf6N2E2_3497 0.17 -0.2 4,078,440 - Pf6N2E2_3497 0.17 -0.3 4,078,440 - Pf6N2E2_3497 0.17 +0.1 4,078,440 - Pf6N2E2_3497 0.17 +0.6 4,078,440 - Pf6N2E2_3497 0.17 +0.2 4,078,440 - Pf6N2E2_3497 0.17 -0.3 4,078,440 - Pf6N2E2_3497 0.17 +0.3 4,078,440 - Pf6N2E2_3497 0.17 +0.4 4,078,440 - Pf6N2E2_3497 0.17 +0.0 4,078,440 - Pf6N2E2_3497 0.17 +0.3 4,078,440 - Pf6N2E2_3497 0.17 +0.0 4,078,440 - Pf6N2E2_3497 0.17 -0.9 4,078,440 - Pf6N2E2_3497 0.17 -0.2 4,078,608 - Pf6N2E2_3497 0.39 -0.7 4,078,628 + Pf6N2E2_3497 0.42 -0.9 4,078,629 - Pf6N2E2_3497 0.42 +0.6 4,078,739 + Pf6N2E2_3497 0.57 -0.0 4,078,739 + Pf6N2E2_3497 0.57 -0.2 4,078,739 + Pf6N2E2_3497 0.57 +0.9 4,078,740 - Pf6N2E2_3497 0.57 -0.2 4,079,010 - -0.3 4,079,149 + Pf6N2E2_3498 0.30 -0.8 4,079,149 + Pf6N2E2_3498 0.30 +0.1 4,079,150 - Pf6N2E2_3498 0.30 -0.8 4,079,150 - Pf6N2E2_3498 0.30 -0.1 4,079,384 + -0.5 4,079,384 + -0.6 4,079,385 - +0.1 4,079,475 + -0.0 4,079,727 - Pf6N2E2_3499 0.68 -0.0 4,079,727 - Pf6N2E2_3499 0.68 +0.1 4,079,727 - Pf6N2E2_3499 0.68 -0.3 4,079,820 - +0.1 4,079,820 - +0.5 4,079,820 - +0.4 4,079,869 + +0.1 4,079,869 + +0.2 4,079,869 + +0.1 4,079,940 + +0.4 4,079,940 + -1.1 4,079,940 + -0.2 4,079,940 + -0.0 4,079,940 + +0.4 4,079,940 + +0.1 4,079,940 + +0.2 4,079,940 + +1.0 4,079,940 + +0.3 4,079,941 - -0.9 4,079,941 - -0.1 4,079,941 - +0.7 4,079,941 - -0.4 4,079,941 - -0.1 4,079,941 - -0.1 4,079,941 - +0.9 4,079,941 - -0.0 4,079,941 - -0.1 4,079,941 - -0.2 4,079,941 - +1.0 4,079,942 + -0.6 4,079,942 + -0.1 4,079,942 + +1.1 4,079,943 - -0.1 4,079,943 - -0.2 4,079,943 - +0.7 4,079,943 - -0.0 4,079,943 - +0.1 4,079,943 - +0.5 4,079,971 + +0.4 4,080,031 - -0.3 4,080,174 + -1.2 4,080,238 + Pf6N2E2_3500 0.13 -0.7 4,080,239 - Pf6N2E2_3500 0.13 -0.3 4,080,239 - Pf6N2E2_3500 0.13 -0.2 4,080,239 - Pf6N2E2_3500 0.13 +0.3 4,080,240 + Pf6N2E2_3500 0.13 -0.8
Or see this region's nucleotide sequence