Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2065

Experiment: perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2063 and Pf6N2E2_2064 are separated by 11 nucleotidesPf6N2E2_2064 and Pf6N2E2_2065 are separated by 77 nucleotidesPf6N2E2_2065 and Pf6N2E2_2066 are separated by 200 nucleotidesPf6N2E2_2066 and Pf6N2E2_2067 are separated by 115 nucleotides Pf6N2E2_2063 - Predicted cobalt transporter CbtA, at 2,455,359 to 2,456,054 _2063 Pf6N2E2_2064 - Cobalt-precorrin-3b C17-methyltransferase, at 2,456,066 to 2,456,455 _2064 Pf6N2E2_2065 - Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133), at 2,456,533 to 2,457,279 _2065 Pf6N2E2_2066 - NfuA Fe-S protein maturation, at 2,457,480 to 2,458,064 _2066 Pf6N2E2_2067 - cis/trans isomerase, at 2,458,180 to 2,460,471 _2067 Position (kb) 2456 2457 2458Strain fitness (log2 ratio) -1 0 1 2at 2455.635 kb on + strand, within Pf6N2E2_2063at 2455.635 kb on + strand, within Pf6N2E2_2063at 2455.635 kb on + strand, within Pf6N2E2_2063at 2455.635 kb on + strand, within Pf6N2E2_2063at 2455.642 kb on + strand, within Pf6N2E2_2063at 2455.693 kb on - strand, within Pf6N2E2_2063at 2455.810 kb on + strand, within Pf6N2E2_2063at 2456.333 kb on + strand, within Pf6N2E2_2064at 2456.334 kb on - strand, within Pf6N2E2_2064at 2456.334 kb on - strand, within Pf6N2E2_2064at 2456.334 kb on - strand, within Pf6N2E2_2064at 2456.405 kb on - strand, within Pf6N2E2_2064at 2456.453 kb on + strandat 2456.542 kb on + strandat 2456.542 kb on + strandat 2456.543 kb on - strandat 2456.543 kb on - strandat 2456.601 kb on - strandat 2456.601 kb on - strandat 2456.626 kb on + strand, within Pf6N2E2_2065at 2456.627 kb on - strand, within Pf6N2E2_2065at 2456.627 kb on - strand, within Pf6N2E2_2065at 2456.788 kb on + strand, within Pf6N2E2_2065at 2456.789 kb on - strand, within Pf6N2E2_2065at 2456.789 kb on - strand, within Pf6N2E2_2065at 2457.135 kb on + strand, within Pf6N2E2_2065at 2457.136 kb on - strand, within Pf6N2E2_2065at 2457.245 kb on - strandat 2457.336 kb on + strandat 2457.337 kb on - strandat 2457.337 kb on - strandat 2457.337 kb on - strandat 2457.337 kb on - strandat 2457.337 kb on - strandat 2457.337 kb on - strandat 2457.478 kb on + strandat 2457.478 kb on + strandat 2457.478 kb on + strandat 2457.478 kb on + strandat 2457.478 kb on + strandat 2457.479 kb on - strandat 2457.479 kb on - strandat 2457.484 kb on + strandat 2457.484 kb on + strandat 2457.485 kb on - strandat 2457.485 kb on - strandat 2457.485 kb on - strandat 2457.485 kb on - strandat 2457.485 kb on - strandat 2457.485 kb on - strandat 2457.488 kb on - strandat 2457.488 kb on - strandat 2457.488 kb on - strandat 2458.094 kb on + strandat 2458.094 kb on + strandat 2458.194 kb on - strandat 2458.244 kb on + strandat 2458.244 kb on + strandat 2458.244 kb on + strandat 2458.244 kb on + strandat 2458.244 kb on + strandat 2458.245 kb on - strandat 2458.245 kb on - strandat 2458.245 kb on - strandat 2458.245 kb on - strandat 2458.265 kb on + strandat 2458.265 kb on + strandat 2458.265 kb on + strandat 2458.265 kb on + strandat 2458.266 kb on - strandat 2458.266 kb on - strandat 2458.266 kb on - strandat 2458.266 kb on - strandat 2458.266 kb on - strandat 2458.266 kb on - strandat 2458.268 kb on + strandat 2458.268 kb on + strandat 2458.269 kb on - strandat 2458.269 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 50 mM
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2,455,635 + Pf6N2E2_2063 0.40 -0.2
2,455,635 + Pf6N2E2_2063 0.40 -0.6
2,455,635 + Pf6N2E2_2063 0.40 +0.6
2,455,635 + Pf6N2E2_2063 0.40 +0.3
2,455,642 + Pf6N2E2_2063 0.41 +0.7
2,455,693 - Pf6N2E2_2063 0.48 +0.1
2,455,810 + Pf6N2E2_2063 0.65 -1.3
2,456,333 + Pf6N2E2_2064 0.68 -0.7
2,456,334 - Pf6N2E2_2064 0.69 +0.8
2,456,334 - Pf6N2E2_2064 0.69 -0.7
2,456,334 - Pf6N2E2_2064 0.69 +0.4
2,456,405 - Pf6N2E2_2064 0.87 +0.3
2,456,453 + -0.2
2,456,542 + -0.4
2,456,542 + +0.5
2,456,543 - -1.4
2,456,543 - +0.6
2,456,601 - -0.4
2,456,601 - +0.3
2,456,626 + Pf6N2E2_2065 0.12 -0.4
2,456,627 - Pf6N2E2_2065 0.13 -0.8
2,456,627 - Pf6N2E2_2065 0.13 -1.7
2,456,788 + Pf6N2E2_2065 0.34 +0.4
2,456,789 - Pf6N2E2_2065 0.34 -0.0
2,456,789 - Pf6N2E2_2065 0.34 -0.5
2,457,135 + Pf6N2E2_2065 0.81 +0.8
2,457,136 - Pf6N2E2_2065 0.81 +0.2
2,457,245 - -0.7
2,457,336 + -0.3
2,457,337 - -1.0
2,457,337 - +0.8
2,457,337 - -0.4
2,457,337 - +0.6
2,457,337 - +0.7
2,457,337 - -0.1
2,457,478 + +0.4
2,457,478 + +0.3
2,457,478 + -0.1
2,457,478 + +0.6
2,457,478 + +0.5
2,457,479 - +0.3
2,457,479 - -0.0
2,457,484 + +0.6
2,457,484 + -0.5
2,457,485 - -0.1
2,457,485 - +0.6
2,457,485 - +0.3
2,457,485 - +1.0
2,457,485 - +1.8
2,457,485 - -0.5
2,457,488 - +0.8
2,457,488 - +0.4
2,457,488 - +0.8
2,458,094 + +1.0
2,458,094 + +0.3
2,458,194 - +0.1
2,458,244 + -0.4
2,458,244 + +0.6
2,458,244 + +0.4
2,458,244 + +0.0
2,458,244 + -0.6
2,458,245 - +0.3
2,458,245 - +0.3
2,458,245 - -0.1
2,458,245 - +0.4
2,458,265 + +0.1
2,458,265 + -0.2
2,458,265 + -0.4
2,458,265 + +0.3
2,458,266 - +0.1
2,458,266 - +0.3
2,458,266 - +0.5
2,458,266 - +0.4
2,458,266 - +0.0
2,458,266 - +0.4
2,458,268 + +0.7
2,458,268 + +0.5
2,458,269 - +0.6
2,458,269 - -0.0

Or see this region's nucleotide sequence