Experiment: perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2063 and Pf6N2E2_2064 are separated by 11 nucleotides Pf6N2E2_2064 and Pf6N2E2_2065 are separated by 77 nucleotides Pf6N2E2_2065 and Pf6N2E2_2066 are separated by 200 nucleotides Pf6N2E2_2066 and Pf6N2E2_2067 are separated by 115 nucleotides
Pf6N2E2_2063 - Predicted cobalt transporter CbtA, at 2,455,359 to 2,456,054
_2063
Pf6N2E2_2064 - Cobalt-precorrin-3b C17-methyltransferase, at 2,456,066 to 2,456,455
_2064
Pf6N2E2_2065 - Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133), at 2,456,533 to 2,457,279
_2065
Pf6N2E2_2066 - NfuA Fe-S protein maturation, at 2,457,480 to 2,458,064
_2066
Pf6N2E2_2067 - cis/trans isomerase, at 2,458,180 to 2,460,471
_2067
Position (kb)
2456
2457
2458 Strain fitness (log2 ratio)
-1
0
1
2 at 2455.635 kb on + strand, within Pf6N2E2_2063 at 2455.635 kb on + strand, within Pf6N2E2_2063 at 2455.635 kb on + strand, within Pf6N2E2_2063 at 2455.635 kb on + strand, within Pf6N2E2_2063 at 2455.642 kb on + strand, within Pf6N2E2_2063 at 2455.693 kb on - strand, within Pf6N2E2_2063 at 2455.810 kb on + strand, within Pf6N2E2_2063 at 2456.333 kb on + strand, within Pf6N2E2_2064 at 2456.334 kb on - strand, within Pf6N2E2_2064 at 2456.334 kb on - strand, within Pf6N2E2_2064 at 2456.334 kb on - strand, within Pf6N2E2_2064 at 2456.405 kb on - strand, within Pf6N2E2_2064 at 2456.453 kb on + strand at 2456.542 kb on + strand at 2456.542 kb on + strand at 2456.543 kb on - strand at 2456.543 kb on - strand at 2456.601 kb on - strand at 2456.601 kb on - strand at 2456.626 kb on + strand, within Pf6N2E2_2065 at 2456.627 kb on - strand, within Pf6N2E2_2065 at 2456.627 kb on - strand, within Pf6N2E2_2065 at 2456.788 kb on + strand, within Pf6N2E2_2065 at 2456.789 kb on - strand, within Pf6N2E2_2065 at 2456.789 kb on - strand, within Pf6N2E2_2065 at 2457.135 kb on + strand, within Pf6N2E2_2065 at 2457.136 kb on - strand, within Pf6N2E2_2065 at 2457.245 kb on - strand at 2457.336 kb on + strand at 2457.337 kb on - strand at 2457.337 kb on - strand at 2457.337 kb on - strand at 2457.337 kb on - strand at 2457.337 kb on - strand at 2457.337 kb on - strand at 2457.478 kb on + strand at 2457.478 kb on + strand at 2457.478 kb on + strand at 2457.478 kb on + strand at 2457.478 kb on + strand at 2457.479 kb on - strand at 2457.479 kb on - strand at 2457.484 kb on + strand at 2457.484 kb on + strand at 2457.485 kb on - strand at 2457.485 kb on - strand at 2457.485 kb on - strand at 2457.485 kb on - strand at 2457.485 kb on - strand at 2457.485 kb on - strand at 2457.488 kb on - strand at 2457.488 kb on - strand at 2457.488 kb on - strand at 2458.094 kb on + strand at 2458.094 kb on + strand at 2458.194 kb on - strand at 2458.244 kb on + strand at 2458.244 kb on + strand at 2458.244 kb on + strand at 2458.244 kb on + strand at 2458.244 kb on + strand at 2458.245 kb on - strand at 2458.245 kb on - strand at 2458.245 kb on - strand at 2458.245 kb on - strand at 2458.265 kb on + strand at 2458.265 kb on + strand at 2458.265 kb on + strand at 2458.265 kb on + strand at 2458.266 kb on - strand at 2458.266 kb on - strand at 2458.266 kb on - strand at 2458.266 kb on - strand at 2458.266 kb on - strand at 2458.266 kb on - strand at 2458.268 kb on + strand at 2458.268 kb on + strand at 2458.269 kb on - strand at 2458.269 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 50 mM remove 2,455,635 + Pf6N2E2_2063 0.40 -0.2 2,455,635 + Pf6N2E2_2063 0.40 -0.6 2,455,635 + Pf6N2E2_2063 0.40 +0.6 2,455,635 + Pf6N2E2_2063 0.40 +0.3 2,455,642 + Pf6N2E2_2063 0.41 +0.7 2,455,693 - Pf6N2E2_2063 0.48 +0.1 2,455,810 + Pf6N2E2_2063 0.65 -1.3 2,456,333 + Pf6N2E2_2064 0.68 -0.7 2,456,334 - Pf6N2E2_2064 0.69 +0.8 2,456,334 - Pf6N2E2_2064 0.69 -0.7 2,456,334 - Pf6N2E2_2064 0.69 +0.4 2,456,405 - Pf6N2E2_2064 0.87 +0.3 2,456,453 + -0.2 2,456,542 + -0.4 2,456,542 + +0.5 2,456,543 - -1.4 2,456,543 - +0.6 2,456,601 - -0.4 2,456,601 - +0.3 2,456,626 + Pf6N2E2_2065 0.12 -0.4 2,456,627 - Pf6N2E2_2065 0.13 -0.8 2,456,627 - Pf6N2E2_2065 0.13 -1.7 2,456,788 + Pf6N2E2_2065 0.34 +0.4 2,456,789 - Pf6N2E2_2065 0.34 -0.0 2,456,789 - Pf6N2E2_2065 0.34 -0.5 2,457,135 + Pf6N2E2_2065 0.81 +0.8 2,457,136 - Pf6N2E2_2065 0.81 +0.2 2,457,245 - -0.7 2,457,336 + -0.3 2,457,337 - -1.0 2,457,337 - +0.8 2,457,337 - -0.4 2,457,337 - +0.6 2,457,337 - +0.7 2,457,337 - -0.1 2,457,478 + +0.4 2,457,478 + +0.3 2,457,478 + -0.1 2,457,478 + +0.6 2,457,478 + +0.5 2,457,479 - +0.3 2,457,479 - -0.0 2,457,484 + +0.6 2,457,484 + -0.5 2,457,485 - -0.1 2,457,485 - +0.6 2,457,485 - +0.3 2,457,485 - +1.0 2,457,485 - +1.8 2,457,485 - -0.5 2,457,488 - +0.8 2,457,488 - +0.4 2,457,488 - +0.8 2,458,094 + +1.0 2,458,094 + +0.3 2,458,194 - +0.1 2,458,244 + -0.4 2,458,244 + +0.6 2,458,244 + +0.4 2,458,244 + +0.0 2,458,244 + -0.6 2,458,245 - +0.3 2,458,245 - +0.3 2,458,245 - -0.1 2,458,245 - +0.4 2,458,265 + +0.1 2,458,265 + -0.2 2,458,265 + -0.4 2,458,265 + +0.3 2,458,266 - +0.1 2,458,266 - +0.3 2,458,266 - +0.5 2,458,266 - +0.4 2,458,266 - +0.0 2,458,266 - +0.4 2,458,268 + +0.7 2,458,268 + +0.5 2,458,269 - +0.6 2,458,269 - -0.0
Or see this region's nucleotide sequence