Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1577

Experiment: perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1576 and Pf6N2E2_1577 are separated by 858 nucleotidesPf6N2E2_1577 and Pf6N2E2_1578 are separated by 304 nucleotides Pf6N2E2_1576 - hypothetical protein, at 1,841,693 to 1,841,824 _1576 Pf6N2E2_1577 - Glucose 1-dehydrogenase (EC 1.1.1.47), at 1,842,683 to 1,843,447 _1577 Pf6N2E2_1578 - T1SS secreted agglutinin RTX, at 1,843,752 to 1,847,927 _1578 Position (kb) 1842 1843 1844Strain fitness (log2 ratio) -1 0 1 2at 1841.694 kb on + strandat 1842.627 kb on + strandat 1842.866 kb on - strand, within Pf6N2E2_1577at 1842.913 kb on + strand, within Pf6N2E2_1577at 1842.979 kb on + strand, within Pf6N2E2_1577at 1842.981 kb on + strand, within Pf6N2E2_1577at 1842.981 kb on + strand, within Pf6N2E2_1577at 1842.981 kb on + strand, within Pf6N2E2_1577at 1843.008 kb on + strand, within Pf6N2E2_1577at 1843.609 kb on + strandat 1843.629 kb on + strandat 1843.630 kb on - strandat 1843.659 kb on - strandat 1843.693 kb on + strandat 1843.693 kb on + strandat 1843.694 kb on - strandat 1843.694 kb on - strandat 1843.705 kb on + strandat 1843.706 kb on - strandat 1843.758 kb on - strandat 1843.855 kb on + strandat 1844.019 kb on + strandat 1844.088 kb on - strandat 1844.094 kb on - strandat 1844.179 kb on - strand, within Pf6N2E2_1578at 1844.179 kb on - strand, within Pf6N2E2_1578at 1844.250 kb on + strand, within Pf6N2E2_1578at 1844.322 kb on - strand, within Pf6N2E2_1578at 1844.322 kb on - strand, within Pf6N2E2_1578

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 50 mM
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1,841,694 + +0.2
1,842,627 + -0.2
1,842,866 - Pf6N2E2_1577 0.24 -0.2
1,842,913 + Pf6N2E2_1577 0.30 -0.4
1,842,979 + Pf6N2E2_1577 0.39 -1.7
1,842,981 + Pf6N2E2_1577 0.39 -1.2
1,842,981 + Pf6N2E2_1577 0.39 +0.4
1,842,981 + Pf6N2E2_1577 0.39 -0.4
1,843,008 + Pf6N2E2_1577 0.42 -1.0
1,843,609 + -0.1
1,843,629 + +0.1
1,843,630 - +0.5
1,843,659 - -0.2
1,843,693 + -0.6
1,843,693 + +0.1
1,843,694 - -0.7
1,843,694 - +0.8
1,843,705 + +0.5
1,843,706 - -0.0
1,843,758 - +0.3
1,843,855 + +0.1
1,844,019 + +2.0
1,844,088 - +0.1
1,844,094 - -0.4
1,844,179 - Pf6N2E2_1578 0.10 -0.1
1,844,179 - Pf6N2E2_1578 0.10 -0.2
1,844,250 + Pf6N2E2_1578 0.12 -0.2
1,844,322 - Pf6N2E2_1578 0.14 +0.2
1,844,322 - Pf6N2E2_1578 0.14 +0.9

Or see this region's nucleotide sequence