Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1279

Experiment: perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1278 and Pf6N2E2_1279 are separated by 213 nucleotidesPf6N2E2_1279 and Pf6N2E2_1280 overlap by 4 nucleotidesPf6N2E2_1280 and Pf6N2E2_1281 are separated by 22 nucleotides Pf6N2E2_1278 - transcriptional regulator, MerR family, at 1,508,176 to 1,509,156 _1278 Pf6N2E2_1279 - Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system, at 1,509,370 to 1,510,314 _1279 Pf6N2E2_1280 - FIG00958542: hypothetical protein, at 1,510,311 to 1,510,790 _1280 Pf6N2E2_1281 - ATPase involved in DNA repair, at 1,510,813 to 1,511,460 _1281 Position (kb) 1509 1510 1511Strain fitness (log2 ratio) -2 -1 0 1 2at 1508.408 kb on + strand, within Pf6N2E2_1278at 1508.409 kb on - strand, within Pf6N2E2_1278at 1508.446 kb on + strand, within Pf6N2E2_1278at 1508.446 kb on + strand, within Pf6N2E2_1278at 1508.447 kb on - strand, within Pf6N2E2_1278at 1508.447 kb on - strand, within Pf6N2E2_1278at 1508.447 kb on - strand, within Pf6N2E2_1278at 1508.510 kb on + strand, within Pf6N2E2_1278at 1508.510 kb on + strand, within Pf6N2E2_1278at 1508.510 kb on + strand, within Pf6N2E2_1278at 1508.510 kb on + strand, within Pf6N2E2_1278at 1508.510 kb on + strand, within Pf6N2E2_1278at 1508.511 kb on - strand, within Pf6N2E2_1278at 1508.511 kb on - strand, within Pf6N2E2_1278at 1508.511 kb on - strand, within Pf6N2E2_1278at 1508.559 kb on - strand, within Pf6N2E2_1278at 1508.582 kb on + strand, within Pf6N2E2_1278at 1508.582 kb on + strand, within Pf6N2E2_1278at 1508.583 kb on - strand, within Pf6N2E2_1278at 1508.583 kb on - strand, within Pf6N2E2_1278at 1508.583 kb on - strand, within Pf6N2E2_1278at 1508.583 kb on - strand, within Pf6N2E2_1278at 1508.583 kb on - strand, within Pf6N2E2_1278at 1508.857 kb on - strand, within Pf6N2E2_1278at 1509.063 kb on + strandat 1509.177 kb on + strandat 1509.183 kb on + strandat 1509.183 kb on + strandat 1509.184 kb on - strandat 1509.372 kb on - strandat 1509.449 kb on + strandat 1509.876 kb on - strand, within Pf6N2E2_1279at 1509.876 kb on - strand, within Pf6N2E2_1279at 1509.939 kb on - strand, within Pf6N2E2_1279at 1510.399 kb on + strand, within Pf6N2E2_1280at 1510.771 kb on + strandat 1510.771 kb on + strandat 1510.772 kb on - strandat 1510.772 kb on - strandat 1510.856 kb on + strandat 1510.856 kb on + strandat 1510.857 kb on - strandat 1510.961 kb on + strand, within Pf6N2E2_1281at 1510.962 kb on - strand, within Pf6N2E2_1281at 1511.109 kb on - strand, within Pf6N2E2_1281at 1511.109 kb on - strand, within Pf6N2E2_1281

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 50 mM
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1,508,408 + Pf6N2E2_1278 0.24 +0.4
1,508,409 - Pf6N2E2_1278 0.24 -0.3
1,508,446 + Pf6N2E2_1278 0.28 +0.4
1,508,446 + Pf6N2E2_1278 0.28 +0.8
1,508,447 - Pf6N2E2_1278 0.28 -0.0
1,508,447 - Pf6N2E2_1278 0.28 +0.2
1,508,447 - Pf6N2E2_1278 0.28 -1.2
1,508,510 + Pf6N2E2_1278 0.34 -0.3
1,508,510 + Pf6N2E2_1278 0.34 -0.4
1,508,510 + Pf6N2E2_1278 0.34 -0.6
1,508,510 + Pf6N2E2_1278 0.34 -0.3
1,508,510 + Pf6N2E2_1278 0.34 +0.1
1,508,511 - Pf6N2E2_1278 0.34 +0.2
1,508,511 - Pf6N2E2_1278 0.34 +0.1
1,508,511 - Pf6N2E2_1278 0.34 +0.7
1,508,559 - Pf6N2E2_1278 0.39 -0.8
1,508,582 + Pf6N2E2_1278 0.41 +0.9
1,508,582 + Pf6N2E2_1278 0.41 -0.2
1,508,583 - Pf6N2E2_1278 0.41 -0.5
1,508,583 - Pf6N2E2_1278 0.41 +0.4
1,508,583 - Pf6N2E2_1278 0.41 +0.0
1,508,583 - Pf6N2E2_1278 0.41 +0.4
1,508,583 - Pf6N2E2_1278 0.41 -0.4
1,508,857 - Pf6N2E2_1278 0.69 -1.6
1,509,063 + -0.2
1,509,177 + -2.0
1,509,183 + -0.4
1,509,183 + +0.1
1,509,184 - +0.4
1,509,372 - -0.4
1,509,449 + +0.9
1,509,876 - Pf6N2E2_1279 0.54 -1.1
1,509,876 - Pf6N2E2_1279 0.54 -0.9
1,509,939 - Pf6N2E2_1279 0.60 -0.4
1,510,399 + Pf6N2E2_1280 0.18 -0.1
1,510,771 + +0.6
1,510,771 + -1.5
1,510,772 - +0.5
1,510,772 - +0.2
1,510,856 + +0.0
1,510,856 + +0.5
1,510,857 - -0.4
1,510,961 + Pf6N2E2_1281 0.23 +0.2
1,510,962 - Pf6N2E2_1281 0.23 +0.6
1,511,109 - Pf6N2E2_1281 0.46 +0.3
1,511,109 - Pf6N2E2_1281 0.46 +2.1

Or see this region's nucleotide sequence