Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12885

Experiment: Ammonium chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N)
2,907,568	+		PFLU_RS12880	0.45	-0.7
2,907,568	+		PFLU_RS12880	0.45	+0.4
2,907,569	-		PFLU_RS12880	0.45	+1.0
2,907,569	-		PFLU_RS12880	0.45	+1.1
2,907,704	-		PFLU_RS12880	0.53	+2.5
2,908,240	+		PFLU_RS12880	0.86	+0.6
2,908,240	+		PFLU_RS12880	0.86	-0.4
2,908,240	+		PFLU_RS12880	0.86	+0.1
2,908,240	+		PFLU_RS12880	0.86	+0.1
2,908,240	+		PFLU_RS12880	0.86	-0.2
2,908,240	+		PFLU_RS12880	0.86	+0.3
2,908,241	-		PFLU_RS12880	0.86	+0.8
2,908,241	-		PFLU_RS12880	0.86	+0.0
2,908,241	-		PFLU_RS12880	0.86	+0.1
2,908,241	-		PFLU_RS12880	0.86	+0.1
2,908,241	-		PFLU_RS12880	0.86	-1.0
2,908,241	-		PFLU_RS12880	0.86	+0.8
2,908,241	-		PFLU_RS12880	0.86	+0.4
2,908,782	-		PFLU_RS12885	0.31	-1.5
2,908,913	+		PFLU_RS12885	0.44	-0.6
2,908,913	+		PFLU_RS12885	0.44	+0.2
2,908,913	+		PFLU_RS12885	0.44	-3.0
2,908,914	-		PFLU_RS12885	0.44	-0.2
2,908,914	-		PFLU_RS12885	0.44	+2.2
2,908,979	+		PFLU_RS12885	0.51	+1.2
2,908,979	+		PFLU_RS12885	0.51	-0.8
2,908,979	+		PFLU_RS12885	0.51	-1.7
2,908,979	+		PFLU_RS12885	0.51	-0.3
2,908,979	+		PFLU_RS12885	0.51	+1.2
2,908,979	+		PFLU_RS12885	0.51	+0.5
2,908,980	-		PFLU_RS12885	0.51	+2.2
2,908,980	-		PFLU_RS12885	0.51	+1.8
2,908,980	-		PFLU_RS12885	0.51	+1.1
2,908,980	-		PFLU_RS12885	0.51	-0.6
2,908,980	-		PFLU_RS12885	0.51	-1.4
2,909,069	+		PFLU_RS12885	0.60	-0.8
2,909,069	+		PFLU_RS12885	0.60	+0.7
2,909,070	-		PFLU_RS12885	0.60	+2.8
2,909,162	+		PFLU_RS12885	0.69	+1.5
2,909,162	+		PFLU_RS12885	0.69	-0.3
2,909,162	+		PFLU_RS12885	0.69	-0.2
2,909,162	+		PFLU_RS12885	0.69	+0.2
2,909,162	+		PFLU_RS12885	0.69	+0.8
2,909,162	+		PFLU_RS12885	0.69	+0.4
2,909,162	+		PFLU_RS12885	0.69	+0.0
2,909,162	+		PFLU_RS12885	0.69	-1.2
2,909,162	+		PFLU_RS12885	0.69	+0.5
2,909,163	-		PFLU_RS12885	0.69	+4.3
2,909,163	-		PFLU_RS12885	0.69	+1.3
2,909,163	-		PFLU_RS12885	0.69	-1.5
2,909,163	-		PFLU_RS12885	0.69	+0.0
2,909,177	+		PFLU_RS12885	0.70	+1.8
2,909,177	+		PFLU_RS12885	0.70	-0.0
2,909,238	+		PFLU_RS12885	0.76	-0.2
2,909,239	-		PFLU_RS12885	0.76	-0.4
2,909,240	+		PFLU_RS12885	0.76	+1.4
2,909,240	+		PFLU_RS12885	0.76	+0.4
2,909,240	+		PFLU_RS12885	0.76	+0.2
2,909,240	+		PFLU_RS12885	0.76	-1.5
2,909,240	+		PFLU_RS12885	0.76	+0.5
2,909,240	+		PFLU_RS12885	0.76	-0.5
2,909,240	+		PFLU_RS12885	0.76	-0.1
2,909,241	-		PFLU_RS12885	0.76	+0.5
2,909,241	-		PFLU_RS12885	0.76	-0.2
2,909,241	-		PFLU_RS12885	0.76	+1.5
2,909,241	-		PFLU_RS12885	0.76	-0.2
2,909,241	-		PFLU_RS12885	0.76	+0.8
2,909,241	-		PFLU_RS12885	0.76	-1.2
2,909,241	-		PFLU_RS12885	0.76	-1.6
2,909,252	+		PFLU_RS12885	0.77	+1.2
2,909,252	+		PFLU_RS12885	0.77	+0.6
2,909,252	+		PFLU_RS12885	0.77	-0.7
2,909,252	+		PFLU_RS12885	0.77	-0.5
2,909,252	+		PFLU_RS12885	0.77	+1.1
2,909,252	+		PFLU_RS12885	0.77	-0.7
2,909,252	+		PFLU_RS12885	0.77	-0.2
2,909,252	+		PFLU_RS12885	0.77	-0.3
2,909,252	+		PFLU_RS12885	0.77	+2.4
2,909,252	+		PFLU_RS12885	0.77	+1.8
2,909,252	+		PFLU_RS12885	0.77	+0.7
2,909,253	-		PFLU_RS12885	0.78	+0.2
2,909,253	-		PFLU_RS12885	0.78	+0.8
2,909,253	-		PFLU_RS12885	0.78	-0.0
2,909,253	-		PFLU_RS12885	0.78	-2.0
2,909,253	-		PFLU_RS12885	0.78	+3.4
2,909,318	+		PFLU_RS12885	0.84	-0.5
2,909,318	+		PFLU_RS12885	0.84	+0.4
2,909,319	-		PFLU_RS12885	0.84	-1.3
2,909,334	-		PFLU_RS12885	0.85	-1.0
2,909,529	+				+0.8
2,909,529	+				+1.2
2,909,529	+				+1.0
2,909,529	+				+0.1
2,909,529	+				+2.1
2,909,529	+				+0.5
2,909,529	+				+1.8
2,909,530	-				+0.5
2,909,530	-				+0.7
2,909,530	-				+0.2
2,909,530	-				+1.3
2,909,530	-				+0.5
2,909,761	-		PFLU_RS12890	0.26	-0.5
2,909,761	-		PFLU_RS12890	0.26	+0.3
2,909,808	+		PFLU_RS12890	0.30	-1.8
2,909,808	+		PFLU_RS12890	0.30	+0.6
2,909,808	+		PFLU_RS12890	0.30	-1.2
2,909,808	+		PFLU_RS12890	0.30	+1.6
2,909,808	+		PFLU_RS12890	0.30	-0.3
2,909,809	-		PFLU_RS12890	0.30	+1.5
2,909,809	-		PFLU_RS12890	0.30	+2.2
2,909,809	-		PFLU_RS12890	0.30	+0.1
2,909,809	-		PFLU_RS12890	0.30	-1.8
2,909,809	-		PFLU_RS12890	0.30	+0.5
2,909,809	-		PFLU_RS12890	0.30	-1.9
2,909,809	-		PFLU_RS12890	0.30	-0.8
2,909,913	+		PFLU_RS12890	0.40	-0.2
2,909,913	+		PFLU_RS12890	0.40	-0.8
2,909,913	+		PFLU_RS12890	0.40	+1.7
2,909,914	-		PFLU_RS12890	0.40	-0.2
2,909,914	-		PFLU_RS12890	0.40	+0.7
2,909,914	-		PFLU_RS12890	0.40	+2.0
2,909,991	+		PFLU_RS12890	0.47	+0.1
2,909,992	-		PFLU_RS12890	0.47	+0.8
2,910,080	+		PFLU_RS12890	0.55	-0.0
2,910,080	+		PFLU_RS12890	0.55	+0.5
2,910,080	+		PFLU_RS12890	0.55	-0.0
2,910,080	+		PFLU_RS12890	0.55	-0.3
2,910,080	+		PFLU_RS12890	0.55	-2.2
2,910,080	+		PFLU_RS12890	0.55	-0.1
2,910,080	+		PFLU_RS12890	0.55	-0.2
2,910,080	+		PFLU_RS12890	0.55	-0.5
2,910,080	+		PFLU_RS12890	0.55	-0.2
2,910,080	+		PFLU_RS12890	0.55	+0.7
2,910,080	+		PFLU_RS12890	0.55	+0.5
2,910,081	-		PFLU_RS12890	0.56	+0.8
2,910,081	-		PFLU_RS12890	0.56	+1.1
2,910,081	-		PFLU_RS12890	0.56	-0.2
2,910,141	+		PFLU_RS12890	0.61	+0.6
2,910,141	+		PFLU_RS12890	0.61	+0.8
2,910,141	+		PFLU_RS12890	0.61	-0.2
2,910,141	+		PFLU_RS12890	0.61	+0.5
2,910,141	+		PFLU_RS12890	0.61	-0.4
2,910,141	+		PFLU_RS12890	0.61	+0.2
2,910,141	+		PFLU_RS12890	0.61	+2.1
2,910,141	+		PFLU_RS12890	0.61	+0.0
2,910,142	-		PFLU_RS12890	0.61	+0.2
2,910,142	-		PFLU_RS12890	0.61	-0.8
2,910,142	-		PFLU_RS12890	0.61	-0.6
2,910,142	-		PFLU_RS12890	0.61	-1.8
2,910,142	-		PFLU_RS12890	0.61	-0.6
2,910,161	+		PFLU_RS12890	0.63	+1.3
2,910,255	+		PFLU_RS12890	0.72	+0.6
2,910,256	-		PFLU_RS12890	0.72	+0.3
2,910,256	-		PFLU_RS12890	0.72	+0.0
2,910,306	+		PFLU_RS12890	0.76	+1.4
2,910,306	+		PFLU_RS12890	0.76	+0.2
2,910,306	+		PFLU_RS12890	0.76	+0.8
2,910,306	+		PFLU_RS12890	0.76	-0.8
2,910,306	+		PFLU_RS12890	0.76	-0.2
2,910,307	-		PFLU_RS12890	0.77	+0.1
2,910,307	-		PFLU_RS12890	0.77	-0.2
2,910,307	-		PFLU_RS12890	0.77	+0.4
2,910,307	-		PFLU_RS12890	0.77	-0.6
2,910,307	-		PFLU_RS12890	0.77	-0.2
2,910,307	-		PFLU_RS12890	0.77	+0.6
2,910,307	-		PFLU_RS12890	0.77	+1.0
2,910,307	-		PFLU_RS12890	0.77	-1.5
2,910,361	-		PFLU_RS12890	0.82	+1.6
2,910,361	-		PFLU_RS12890	0.82	-0.4