Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08285

Experiment: formate N-free with 10mM Ammonium chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	formate N-free with 10mM Ammonium chloride
1,525,996	+		MMJJ_RS08280	0.50	-1.3
1,525,996	+		MMJJ_RS08280	0.50	-0.4
1,526,039	+		MMJJ_RS08280	0.53	+1.2
1,526,099	-		MMJJ_RS08280	0.56	+0.4
1,526,109	+		MMJJ_RS08280	0.57	+0.3
1,526,114	+		MMJJ_RS08280	0.57	-0.1
1,526,130	+		MMJJ_RS08280	0.58	-0.2
1,526,213	-		MMJJ_RS08280	0.62	+0.5
1,526,255	-		MMJJ_RS08280	0.65	+0.7
1,526,255	-		MMJJ_RS08280	0.65	-0.7
1,526,259	-		MMJJ_RS08280	0.65	-0.4
1,526,260	+		MMJJ_RS08280	0.65	-0.0
1,526,282	-		MMJJ_RS08280	0.66	-0.4
1,526,283	+		MMJJ_RS08280	0.66	-0.5
1,526,400	-		MMJJ_RS08280	0.73	-0.6
1,526,405	-		MMJJ_RS08280	0.73	+0.3
1,526,405	-		MMJJ_RS08280	0.73	+0.1
1,526,405	-		MMJJ_RS08280	0.73	+0.1
1,526,418	+		MMJJ_RS08280	0.74	-0.3
1,526,496	+		MMJJ_RS08280	0.79	-0.6
1,526,503	-		MMJJ_RS08280	0.79	-0.3
1,526,504	+		MMJJ_RS08280	0.79	-0.8
1,526,504	+		MMJJ_RS08280	0.79	+0.1
1,526,508	-		MMJJ_RS08280	0.79	-1.2
1,526,509	+		MMJJ_RS08280	0.79	+0.4
1,526,578	-		MMJJ_RS08280	0.83	-0.1
1,526,578	-		MMJJ_RS08280	0.83	-0.0
1,526,613	+		MMJJ_RS08280	0.85	+0.5
1,526,647	-		MMJJ_RS08280	0.87	+0.8
1,526,668	-		MMJJ_RS08280	0.88	+0.2
1,526,669	+		MMJJ_RS08280	0.88	+0.1
1,526,681	+		MMJJ_RS08280	0.89	-0.7
1,526,699	+				+0.3
1,526,699	+				+0.7
1,526,722	-				+0.3
1,526,751	+				+0.3
1,526,751	+				+0.6
1,526,755	-				-0.1
1,526,755	-				+0.3
1,526,755	-				+0.5
1,526,756	+				+0.4
1,526,756	+				+0.5
1,526,803	-				+0.5
1,526,804	+				+0.3
1,526,805	-				+0.1
1,526,805	-				-0.4
1,526,805	-				+0.5
1,526,806	+				+1.0
1,526,806	+				-0.7
1,526,806	+				-0.2
1,526,806	+				+2.0
1,526,810	+				-0.3
1,526,810	+				+0.1
1,526,810	+				+0.7
1,526,823	-				+0.0
1,526,859	+				-0.1
1,526,859	+				+0.9
1,526,863	-				+0.1
1,526,863	-				+1.0
1,526,863	-				+0.6
1,526,864	+				-0.4
1,526,950	+		MMJJ_RS08285	0.12	+0.1
1,526,950	+		MMJJ_RS08285	0.12	-0.1
1,526,953	-		MMJJ_RS08285	0.12	+0.6
1,526,953	-		MMJJ_RS08285	0.12	-0.4
1,526,954	+		MMJJ_RS08285	0.12	+0.8
1,526,954	+		MMJJ_RS08285	0.12	+0.1
1,526,965	-		MMJJ_RS08285	0.14	+0.6
1,526,966	+		MMJJ_RS08285	0.14	-0.5
1,526,966	+		MMJJ_RS08285	0.14	+0.4
1,526,999	+		MMJJ_RS08285	0.19	+0.5
1,527,068	+		MMJJ_RS08285	0.30	-0.4
1,527,096	-		MMJJ_RS08285	0.34	+0.6
1,527,098	-		MMJJ_RS08285	0.34	-0.2
1,527,098	-		MMJJ_RS08285	0.34	+0.5
1,527,098	-		MMJJ_RS08285	0.34	+0.7
1,527,170	+		MMJJ_RS08285	0.45	-0.3
1,527,190	-		MMJJ_RS08285	0.48	-0.6
1,527,190	-		MMJJ_RS08285	0.48	+0.7
1,527,191	+		MMJJ_RS08285	0.49	+0.8
1,527,200	-		MMJJ_RS08285	0.50	+0.7
1,527,200	-		MMJJ_RS08285	0.50	+0.5
1,527,201	+		MMJJ_RS08285	0.50	+1.0
1,527,201	+		MMJJ_RS08285	0.50	-0.1
1,527,205	+		MMJJ_RS08285	0.51	-0.3
1,527,226	-		MMJJ_RS08285	0.54	-0.1
1,527,226	-		MMJJ_RS08285	0.54	+1.0
1,527,227	+		MMJJ_RS08285	0.54	+0.4
1,527,227	+		MMJJ_RS08285	0.54	+0.7
1,527,227	+		MMJJ_RS08285	0.54	+1.4
1,527,227	+		MMJJ_RS08285	0.54	-0.7
1,527,259	-		MMJJ_RS08285	0.59	-0.6
1,527,283	-		MMJJ_RS08285	0.63	-0.9
1,527,289	-		MMJJ_RS08285	0.63	+0.6
1,527,289	-		MMJJ_RS08285	0.63	+0.3
1,527,290	+		MMJJ_RS08285	0.64	+0.2
1,527,300	-		MMJJ_RS08285	0.65	+0.6
1,527,300	-		MMJJ_RS08285	0.65	+0.2
1,527,301	+		MMJJ_RS08285	0.65	+0.7
1,527,301	+		MMJJ_RS08285	0.65	+0.4
1,527,389	+		MMJJ_RS08285	0.79	+0.6
1,527,390	-		MMJJ_RS08285	0.79	-0.4
1,527,391	+		MMJJ_RS08285	0.79	+0.3
1,527,446	-		MMJJ_RS08285	0.87	+1.1
1,527,446	-		MMJJ_RS08285	0.87	+1.1
1,527,528	-				-0.6
1,527,529	+				+0.4
1,527,529	-				-0.4
1,527,549	-				-0.1
1,527,570	+				-0.2
1,527,619	-				+0.6
1,527,619	-				-0.8
1,527,620	+				-0.0
1,527,620	+				+0.4
1,527,621	-				-0.0
1,527,621	-				+0.2
1,527,621	-				-0.1
1,527,622	+				+0.2
1,527,622	+				+0.2
1,527,622	+				+0.2
1,527,622	+				-2.0
1,527,622	+				+0.5
1,527,622	+				+0.4
1,527,622	+				+0.9
1,527,623	-				+0.1
1,527,624	+				+0.4
1,527,626	-				+0.8
1,527,627	+				+0.6
1,527,703	-				+1.0
1,527,775	+				+0.6
1,527,812	-				-0.3
1,527,827	-				-0.1
1,527,828	+				-0.8
1,527,831	-				+0.8
1,527,831	-				+0.6
1,527,832	+				+0.1
1,527,832	+				+0.1
1,527,832	+				+0.3
1,527,832	+				+0.5
1,527,832	+				+0.5
1,527,832	+				-0.2
1,527,832	+				-0.4
1,527,832	+				+0.5
1,527,943	+				+0.8
1,527,945	+				-0.1
1,527,945	+				-0.5
1,527,945	+				+1.3
1,528,038	-		MMJJ_RS08290	0.14	+0.5
1,528,038	-		MMJJ_RS08290	0.14	-0.9
1,528,038	-		MMJJ_RS08290	0.14	-0.4
1,528,039	+		MMJJ_RS08290	0.14	-0.1
1,528,041	-		MMJJ_RS08290	0.14	+0.2
1,528,041	-		MMJJ_RS08290	0.14	-0.7
1,528,075	-		MMJJ_RS08290	0.17	+0.3
1,528,075	-		MMJJ_RS08290	0.17	-0.2
1,528,075	-		MMJJ_RS08290	0.17	-0.0
1,528,075	-		MMJJ_RS08290	0.17	+0.0
1,528,076	+		MMJJ_RS08290	0.17	-1.2
1,528,076	+		MMJJ_RS08290	0.17	+0.5
1,528,076	+		MMJJ_RS08290	0.17	-0.6
1,528,077	-		MMJJ_RS08290	0.17	-1.8
1,528,080	-		MMJJ_RS08290	0.17	+0.6
1,528,080	-		MMJJ_RS08290	0.17	+0.4
1,528,081	+		MMJJ_RS08290	0.18	-0.6
1,528,081	+		MMJJ_RS08290	0.18	+0.9
1,528,085	+		MMJJ_RS08290	0.18	-0.5
1,528,138	+		MMJJ_RS08290	0.23	-0.2
1,528,159	+		MMJJ_RS08290	0.25	-0.4
1,528,224	+		MMJJ_RS08290	0.30	-0.7
1,528,286	-		MMJJ_RS08290	0.36	+0.4
1,528,307	-		MMJJ_RS08290	0.38	-0.6
1,528,308	+		MMJJ_RS08290	0.38	-1.6
1,528,319	+		MMJJ_RS08290	0.39	+0.3
1,528,337	+		MMJJ_RS08290	0.40	+0.5
1,528,362	-		MMJJ_RS08290	0.43	+0.6
1,528,362	-		MMJJ_RS08290	0.43	+0.8
1,528,362	-		MMJJ_RS08290	0.43	+0.7
1,528,367	+		MMJJ_RS08290	0.43	-0.5
1,528,376	+		MMJJ_RS08290	0.44	+1.0
1,528,410	+		MMJJ_RS08290	0.47	-0.2
1,528,433	+		MMJJ_RS08290	0.49	+0.2
1,528,443	+		MMJJ_RS08290	0.50	-0.2
1,528,503	+		MMJJ_RS08290	0.55	+0.1