Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08005

Experiment: formate N-free with 10mM Ammonium chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	formate N-free with 10mM Ammonium chloride
1,465,549	-		MMJJ_RS07995	0.73	-2.5
1,465,549	-		MMJJ_RS07995	0.73	-2.1
1,465,588	-		MMJJ_RS07995	0.82	-1.1
1,465,588	-		MMJJ_RS07995	0.82	-2.2
1,465,588	-		MMJJ_RS07995	0.82	-1.6
1,465,589	+		MMJJ_RS07995	0.83	-1.6
1,465,636	+				-0.5
1,465,665	+				+0.7
1,465,700	-				-3.3
1,465,701	+				-3.0
1,465,732	-		MMJJ_RS08000	0.11	-1.6
1,465,733	+		MMJJ_RS08000	0.11	-3.3
1,465,733	+		MMJJ_RS08000	0.11	-2.8
1,465,737	+		MMJJ_RS08000	0.11	-0.2
1,465,751	+		MMJJ_RS08000	0.13	-1.9
1,465,778	-		MMJJ_RS08000	0.17	-4.9
1,465,781	-		MMJJ_RS08000	0.17	-0.9
1,465,852	-		MMJJ_RS08000	0.27	-3.3
1,465,872	+		MMJJ_RS08000	0.30	-1.7
1,465,882	-		MMJJ_RS08000	0.32	-2.5
1,465,882	-		MMJJ_RS08000	0.32	-2.1
1,465,891	-		MMJJ_RS08000	0.33	-2.0
1,465,892	+		MMJJ_RS08000	0.33	-4.2
1,465,922	+		MMJJ_RS08000	0.37	-2.8
1,465,934	-		MMJJ_RS08000	0.39	-3.1
1,465,934	-		MMJJ_RS08000	0.39	-2.2
1,465,969	-		MMJJ_RS08000	0.44	-1.7
1,465,970	+		MMJJ_RS08000	0.44	-2.6
1,465,970	+		MMJJ_RS08000	0.44	-3.0
1,465,971	-		MMJJ_RS08000	0.44	-1.2
1,465,972	+		MMJJ_RS08000	0.44	-2.3
1,465,988	+		MMJJ_RS08000	0.46	-0.8
1,465,994	-		MMJJ_RS08000	0.47	-3.5
1,465,994	-		MMJJ_RS08000	0.47	-2.1
1,465,995	+				+1.0
1,465,998	-		MMJJ_RS08000	0.48	-2.0
1,465,999	+		MMJJ_RS08000	0.48	-0.9
1,465,999	+		MMJJ_RS08000	0.48	-1.4
1,466,003	+		MMJJ_RS08000	0.48	-1.9
1,466,009	+		MMJJ_RS08000	0.49	-4.3
1,466,014	-		MMJJ_RS08000	0.50	-3.2
1,466,033	+		MMJJ_RS08000	0.53	-2.4
1,466,090	-		MMJJ_RS08000	0.60	-1.4
1,466,091	+		MMJJ_RS08000	0.61	-3.2
1,466,102	+		MMJJ_RS08000	0.62	-2.6
1,466,105	+		MMJJ_RS08000	0.62	-1.5
1,466,132	+		MMJJ_RS08000	0.66	-3.3
1,466,181	+		MMJJ_RS08000	0.73	-1.1
1,466,244	+		MMJJ_RS08000	0.82	-0.6
1,466,291	-		MMJJ_RS08000	0.88	-1.4
1,466,342	-				-1.5
1,466,358	-				-1.5
1,466,359	+				-4.1
1,466,359	+				-4.3
1,466,375	+				-1.4
1,466,375	+				-4.1
1,466,377	-				-3.1
1,466,386	-				-1.0
1,466,398	-				-0.5
1,466,398	-				+0.3
1,466,398	-				-1.5
1,466,398	-				-0.5
1,466,398	-				-1.6
1,466,398	-				+0.2
1,466,398	-				+0.3
1,466,398	-				+0.0
1,466,398	-				-0.1
1,466,399	+				+0.2
1,466,399	+				-1.2
1,466,399	+				+0.2
1,466,399	+				+0.1
1,466,399	+				+0.1
1,466,399	+				+0.7
1,466,399	+				-0.1
1,466,399	+				+1.4
1,466,399	+				-0.2
1,466,400	-				-0.3
1,466,407	-				+1.6
1,466,407	-				-0.2
1,466,407	-				+1.0
1,466,407	-				+0.2
1,466,413	+				+0.4
1,466,414	-				+0.3
1,466,414	-				-0.0
1,466,414	-				-0.3
1,466,415	+				+0.1
1,466,415	+				+0.5
1,466,418	+				-0.4
1,466,418	+				-0.1
1,466,420	-				+0.5
1,466,420	-				+0.5
1,466,420	-				-0.4
1,466,429	-				-0.7
1,466,429	-				+0.0
1,466,430	+				+0.1
1,466,430	+				+0.4
1,466,460	+				-0.5
1,466,478	+				-1.8
1,466,484	-				-0.6
1,466,534	+		MMJJ_RS08005	0.11	-3.7
1,466,557	+		MMJJ_RS08005	0.15	-3.3
1,466,573	+		MMJJ_RS08005	0.17	-2.6
1,466,590	-		MMJJ_RS08005	0.19	-2.1
1,466,644	+		MMJJ_RS08005	0.27	-2.2
1,466,673	+		MMJJ_RS08005	0.31	-3.3
1,466,677	-		MMJJ_RS08005	0.32	-2.6
1,466,677	-		MMJJ_RS08005	0.32	-2.1
1,466,678	+		MMJJ_RS08005	0.32	-2.0
1,466,678	+		MMJJ_RS08005	0.32	-2.6
1,466,678	+		MMJJ_RS08005	0.32	-1.4
1,466,678	+		MMJJ_RS08005	0.32	+1.4
1,466,678	+		MMJJ_RS08005	0.32	-2.1
1,466,692	-		MMJJ_RS08005	0.34	-1.8
1,466,692	-		MMJJ_RS08005	0.34	-3.2
1,466,694	-		MMJJ_RS08005	0.34	-2.9
1,466,694	-		MMJJ_RS08005	0.34	-3.0
1,466,694	-		MMJJ_RS08005	0.34	-1.6
1,466,694	-		MMJJ_RS08005	0.34	-1.7
1,466,694	-		MMJJ_RS08005	0.34	-0.2
1,466,694	-		MMJJ_RS08005	0.34	-2.7
1,466,694	-		MMJJ_RS08005	0.34	-1.8
1,466,694	-		MMJJ_RS08005	0.34	-2.8
1,466,694	-		MMJJ_RS08005	0.34	-1.4
1,466,694	-		MMJJ_RS08005	0.34	-0.6
1,466,694	-		MMJJ_RS08005	0.34	-3.4
1,466,694	-		MMJJ_RS08005	0.34	-0.4
1,466,694	-		MMJJ_RS08005	0.34	-1.3
1,466,694	-		MMJJ_RS08005	0.34	-4.4
1,466,695	+		MMJJ_RS08005	0.34	-1.9
1,466,695	+		MMJJ_RS08005	0.34	-0.5
1,466,695	+		MMJJ_RS08005	0.34	-2.1
1,466,695	+		MMJJ_RS08005	0.34	-1.5
1,466,695	+		MMJJ_RS08005	0.34	-3.4
1,466,695	+		MMJJ_RS08005	0.34	-4.3
1,466,695	+		MMJJ_RS08005	0.34	-2.9
1,466,695	+		MMJJ_RS08005	0.34	-3.3
1,466,695	+		MMJJ_RS08005	0.34	-1.1
1,466,695	+		MMJJ_RS08005	0.34	-4.1
1,466,695	+		MMJJ_RS08005	0.34	-3.1
1,466,695	+		MMJJ_RS08005	0.34	-2.4
1,466,698	-		MMJJ_RS08005	0.35	-2.2
1,466,698	-		MMJJ_RS08005	0.35	-2.7
1,466,698	-		MMJJ_RS08005	0.35	-1.9
1,466,699	+		MMJJ_RS08005	0.35	-3.3
1,466,722	-		MMJJ_RS08005	0.38	-1.8
1,466,760	+		MMJJ_RS08005	0.44	-2.3
1,466,766	+		MMJJ_RS08005	0.44	-2.7
1,466,789	-		MMJJ_RS08005	0.48	-3.1
1,466,863	-		MMJJ_RS08005	0.58	-2.5
1,466,863	-		MMJJ_RS08005	0.58	-3.2
1,466,899	-		MMJJ_RS08005	0.63	-2.4
1,466,900	+		MMJJ_RS08005	0.64	-2.3
1,466,903	-		MMJJ_RS08005	0.64	-1.6
1,466,908	-		MMJJ_RS08005	0.65	-0.8
1,466,927	+		MMJJ_RS08005	0.67	-1.3
1,466,934	+		MMJJ_RS08005	0.68	-2.2
1,466,998	-		MMJJ_RS08005	0.77	-3.1
1,467,002	+		MMJJ_RS08005	0.78	-4.4
1,467,002	+		MMJJ_RS08005	0.78	-1.3
1,467,023	+		MMJJ_RS08005	0.81	-2.3
1,467,082	-		MMJJ_RS08005	0.89	-2.9
1,467,121	+				-2.4
1,467,139	-				+1.0
1,467,140	+				-1.2
1,467,288	-				+1.3
1,467,333	-		MMJJ_RS08010	0.14	-0.5
1,467,440	+		MMJJ_RS08010	0.26	+0.1
1,467,478	-		MMJJ_RS08010	0.31	-0.2
1,467,478	-		MMJJ_RS08010	0.31	-0.4
1,467,492	-		MMJJ_RS08010	0.32	-0.0
1,467,502	-		MMJJ_RS08010	0.33	-0.6
1,467,571	-		MMJJ_RS08010	0.41	-1.0
1,467,573	-		MMJJ_RS08010	0.41	-0.6
1,467,591	-		MMJJ_RS08010	0.43	-2.4
1,467,592	+		MMJJ_RS08010	0.43	-1.3
1,467,592	+		MMJJ_RS08010	0.43	-0.1
1,467,621	-		MMJJ_RS08010	0.47	-0.9
1,467,675	+		MMJJ_RS08010	0.53	-0.8
1,467,675	+		MMJJ_RS08010	0.53	+0.5
1,467,810	-		MMJJ_RS08010	0.68	-2.5
1,467,837	-		MMJJ_RS08010	0.71	-0.5
1,467,838	+		MMJJ_RS08010	0.71	-0.9
1,467,838	+		MMJJ_RS08010	0.71	-0.9
1,467,841	-		MMJJ_RS08010	0.71	-0.9
1,467,843	-		MMJJ_RS08010	0.71	-0.2
1,467,843	-		MMJJ_RS08010	0.71	-0.4
1,467,844	+		MMJJ_RS08010	0.72	-0.5
1,467,951	-		MMJJ_RS08010	0.84	-0.9
1,468,039	+				+0.6
1,468,138	+				-0.3