Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07655

Experiment: formate N-free with 10mM Ammonium chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	formate N-free with 10mM Ammonium chloride
1,399,909	+				-0.5
1,399,918	-				+0.5
1,399,918	-				-0.4
1,399,919	+				+1.1
1,399,929	-				+0.6
1,399,953	-				-1.3
1,399,953	-				-0.8
1,399,953	-				-2.1
1,399,953	-				-2.0
1,399,953	-				-0.6
1,399,953	-				-1.5
1,399,953	-				-0.9
1,399,954	+				-0.3
1,399,954	+				-1.5
1,399,954	+				+0.6
1,399,955	-				-1.2
1,399,955	-				-0.3
1,399,956	+				-1.0
1,399,958	-				-1.1
1,399,958	-				-0.6
1,399,958	-				-1.1
1,399,959	+				-1.4
1,399,959	+				-0.8
1,399,959	+				-2.6
1,399,960	-				-1.8
1,399,960	-				-2.0
1,399,960	-				-1.2
1,399,960	-				-1.2
1,399,960	-				-0.9
1,399,960	-				-1.2
1,399,960	-				-1.6
1,399,961	+				-0.9
1,399,961	+				-1.3
1,399,962	-				-1.1
1,399,962	-				-0.0
1,399,962	-				-1.6
1,399,962	-				-1.3
1,399,963	+				-2.2
1,399,963	+				-2.1
1,399,963	+				-0.3
1,399,965	-				-0.2
1,399,965	-				-0.7
1,399,965	-				-1.8
1,399,965	-				-2.3
1,399,965	-				-1.3
1,399,965	-				-0.6
1,399,966	+				-1.3
1,399,966	+				-1.7
1,399,969	-				-2.7
1,399,969	-				-1.3
1,399,969	-				-2.1
1,399,970	+				-1.8
1,399,970	+				-1.6
1,399,970	+				-1.2
1,399,970	+				-1.1
1,399,973	-				-1.4
1,399,973	-				-0.3
1,399,973	-				-1.4
1,399,974	+				-1.1
1,399,974	+				-1.0
1,399,974	+				-2.3
1,399,974	+				-0.6
1,399,974	+				-1.5
1,399,974	+				-1.8
1,399,984	+				-1.5
1,400,018	-				-2.3
1,400,021	-				-2.0
1,400,022	+				-2.2
1,400,022	+				-2.9
1,400,032	-				-2.0
1,400,032	-				-2.3
1,400,033	+				-2.2
1,400,080	-				-2.0
1,400,081	+				-1.1
1,400,081	+				-0.6
1,400,094	+				-1.4
1,400,136	-		MMJJ_RS07650	0.13	-1.1
1,400,136	-		MMJJ_RS07650	0.13	-2.1
1,400,137	+		MMJJ_RS07650	0.14	-1.9
1,400,137	+		MMJJ_RS07650	0.14	-0.5
1,400,137	+		MMJJ_RS07650	0.14	-2.7
1,400,170	-		MMJJ_RS07650	0.18	-2.7
1,400,170	-		MMJJ_RS07650	0.18	-1.9
1,400,170	-		MMJJ_RS07650	0.18	-1.7
1,400,171	+		MMJJ_RS07650	0.18	-1.6
1,400,210	-		MMJJ_RS07650	0.22	+0.0
1,400,230	-		MMJJ_RS07650	0.25	-1.6
1,400,279	-		MMJJ_RS07650	0.31	-1.1
1,400,288	-		MMJJ_RS07650	0.32	-2.0
1,400,288	-		MMJJ_RS07650	0.32	-2.6
1,400,288	-		MMJJ_RS07650	0.32	-2.7
1,400,289	+		MMJJ_RS07650	0.32	-1.5
1,400,299	-		MMJJ_RS07650	0.33	-1.6
1,400,331	-		MMJJ_RS07650	0.37	-1.2
1,400,332	+		MMJJ_RS07650	0.37	-1.6
1,400,332	+		MMJJ_RS07650	0.37	-1.8
1,400,341	-		MMJJ_RS07650	0.38	-2.6
1,400,341	-		MMJJ_RS07650	0.38	-0.9
1,400,342	+		MMJJ_RS07650	0.38	-3.0
1,400,342	+		MMJJ_RS07650	0.38	-1.4
1,400,342	+		MMJJ_RS07650	0.38	-1.7
1,400,344	-		MMJJ_RS07650	0.39	-0.3
1,400,351	+		MMJJ_RS07650	0.40	-1.8
1,400,358	-		MMJJ_RS07650	0.40	-1.7
1,400,359	+		MMJJ_RS07650	0.40	-2.3
1,400,359	+		MMJJ_RS07650	0.40	-2.1
1,400,359	+		MMJJ_RS07650	0.40	-1.5
1,400,359	+		MMJJ_RS07650	0.40	-1.2
1,400,359	+		MMJJ_RS07650	0.40	-1.7
1,400,359	+		MMJJ_RS07650	0.40	-2.2
1,400,365	+		MMJJ_RS07650	0.41	-2.3
1,400,365	+		MMJJ_RS07650	0.41	-1.8
1,400,392	-		MMJJ_RS07650	0.44	-2.6
1,400,394	-		MMJJ_RS07650	0.45	-1.6
1,400,395	+		MMJJ_RS07650	0.45	-1.8
1,400,395	+		MMJJ_RS07650	0.45	-0.8
1,400,459	+		MMJJ_RS07650	0.53	-2.8
1,400,511	-		MMJJ_RS07650	0.59	-3.1
1,400,512	+		MMJJ_RS07650	0.59	-2.5
1,400,512	+		MMJJ_RS07650	0.59	-1.9
1,400,558	-		MMJJ_RS07650	0.65	-2.3
1,400,558	-		MMJJ_RS07650	0.65	+0.0
1,400,567	-		MMJJ_RS07650	0.66	-1.6
1,400,575	-		MMJJ_RS07650	0.67	-2.1
1,400,576	+		MMJJ_RS07650	0.67	-1.7
1,400,580	+		MMJJ_RS07650	0.67	-1.5
1,400,593	-		MMJJ_RS07650	0.69	-0.1
1,400,593	-		MMJJ_RS07650	0.69	-2.8
1,400,593	-		MMJJ_RS07650	0.69	-2.6
1,400,593	-		MMJJ_RS07650	0.69	-3.4
1,400,594	+		MMJJ_RS07650	0.69	-1.9
1,400,594	+		MMJJ_RS07650	0.69	-1.6
1,400,594	+		MMJJ_RS07650	0.69	-1.9
1,400,697	-		MMJJ_RS07650	0.81	-2.2
1,400,697	-		MMJJ_RS07650	0.81	-1.9
1,400,697	-		MMJJ_RS07650	0.81	-2.6
1,400,698	+		MMJJ_RS07650	0.82	-1.8
1,400,698	+		MMJJ_RS07650	0.82	-2.6
1,400,698	+		MMJJ_RS07650	0.82	-1.4
1,400,698	+		MMJJ_RS07650	0.82	-1.9
1,400,703	+		MMJJ_RS07650	0.82	+0.2
1,400,804	+				-3.1
1,400,818	-				-1.5
1,400,818	-				-3.5
1,400,818	-				-1.5
1,400,818	-				-1.3
1,400,819	+				-1.7
1,400,819	+				-2.0
1,400,819	+				-1.1
1,400,819	+				-0.7
1,400,820	-				-4.6
1,400,821	+				-2.4
1,400,860	-				-3.3
1,400,861	+				-2.7
1,400,864	+				-0.7
1,400,884	+				-3.8
1,400,884	+				-2.3
1,400,884	+				-1.9
1,400,895	+				-2.1
1,400,900	-				-1.0
1,400,901	+				-2.4
1,400,901	+				-1.7
1,400,906	-				-2.7
1,400,906	-				-2.9
1,400,907	+				-2.8
1,400,949	-		MMJJ_RS07655	0.12	-2.1
1,400,950	+		MMJJ_RS07655	0.12	+0.6
1,400,963	-		MMJJ_RS07655	0.14	-1.6
1,400,963	-		MMJJ_RS07655	0.14	-2.3
1,400,963	-		MMJJ_RS07655	0.14	-1.4
1,400,964	+		MMJJ_RS07655	0.14	-3.6
1,400,964	+		MMJJ_RS07655	0.14	-2.7
1,400,992	-		MMJJ_RS07655	0.20	+0.4
1,400,992	-		MMJJ_RS07655	0.20	-1.6
1,400,992	-		MMJJ_RS07655	0.20	-3.2
1,400,994	-		MMJJ_RS07655	0.20	-3.1
1,400,995	+		MMJJ_RS07655	0.20	-2.6
1,401,000	-		MMJJ_RS07655	0.21	-3.3
1,401,001	+		MMJJ_RS07655	0.21	-3.0
1,401,018	+		MMJJ_RS07655	0.25	-2.1
1,401,018	+		MMJJ_RS07655	0.25	-1.6
1,401,036	-		MMJJ_RS07655	0.28	-2.0
1,401,036	-		MMJJ_RS07655	0.28	-2.9
1,401,036	-		MMJJ_RS07655	0.28	-2.7
1,401,041	-		MMJJ_RS07655	0.29	-1.8
1,401,082	+		MMJJ_RS07655	0.37	-3.2
1,401,090	+		MMJJ_RS07655	0.38	-3.5
1,401,113	+		MMJJ_RS07655	0.42	-2.0
1,401,113	+		MMJJ_RS07655	0.42	-2.8
1,401,116	-		MMJJ_RS07655	0.43	-4.0
1,401,116	-		MMJJ_RS07655	0.43	-0.2
1,401,116	-		MMJJ_RS07655	0.43	-2.5
1,401,116	-		MMJJ_RS07655	0.43	-1.9
1,401,116	-		MMJJ_RS07655	0.43	-1.3
1,401,117	+		MMJJ_RS07655	0.43	-2.4
1,401,117	+		MMJJ_RS07655	0.43	-2.6
1,401,117	+		MMJJ_RS07655	0.43	-3.8
1,401,117	+		MMJJ_RS07655	0.43	-3.8
1,401,117	+		MMJJ_RS07655	0.43	-3.0
1,401,117	+		MMJJ_RS07655	0.43	-3.6
1,401,117	+		MMJJ_RS07655	0.43	-4.8
1,401,117	+		MMJJ_RS07655	0.43	-3.7
1,401,117	+		MMJJ_RS07655	0.43	-2.4
1,401,117	+		MMJJ_RS07655	0.43	-2.8
1,401,133	-		MMJJ_RS07655	0.46	-2.5
1,401,138	-		MMJJ_RS07655	0.47	-3.0
1,401,139	+		MMJJ_RS07655	0.47	-2.3
1,401,139	+		MMJJ_RS07655	0.47	-2.0
1,401,139	+		MMJJ_RS07655	0.47	-3.4
1,401,139	+		MMJJ_RS07655	0.47	-2.0
1,401,139	+		MMJJ_RS07655	0.47	-2.2
1,401,139	+		MMJJ_RS07655	0.47	-2.6
1,401,153	-		MMJJ_RS07655	0.50	-3.2
1,401,160	+		MMJJ_RS07655	0.51	-2.8
1,401,160	+		MMJJ_RS07655	0.51	-4.1
1,401,165	+		MMJJ_RS07655	0.52	-2.8
1,401,203	-		MMJJ_RS07655	0.59	-0.0
1,401,203	-		MMJJ_RS07655	0.59	-3.2
1,401,215	-		MMJJ_RS07655	0.61	-2.1
1,401,241	+		MMJJ_RS07655	0.66	-1.8
1,401,260	-		MMJJ_RS07655	0.70	-1.4
1,401,261	+		MMJJ_RS07655	0.70	-2.3
1,401,261	+		MMJJ_RS07655	0.70	-2.8
1,401,310	+		MMJJ_RS07655	0.79	-2.9
1,401,314	-		MMJJ_RS07655	0.80	-2.6
1,401,314	-		MMJJ_RS07655	0.80	-1.8
1,401,315	+		MMJJ_RS07655	0.80	-3.8
1,401,315	+		MMJJ_RS07655	0.80	-1.6
1,401,315	+		MMJJ_RS07655	0.80	-3.8
1,401,315	+		MMJJ_RS07655	0.80	-1.6
1,401,315	+		MMJJ_RS07655	0.80	-1.6
1,401,315	+		MMJJ_RS07655	0.80	-3.1
1,401,332	-		MMJJ_RS07655	0.83	-2.7
1,401,333	+		MMJJ_RS07655	0.84	-1.4
1,401,333	+		MMJJ_RS07655	0.84	-4.3
1,401,336	-		MMJJ_RS07655	0.84	-2.2
1,401,360	+		MMJJ_RS07655	0.89	-2.5
1,401,388	+				-3.5
1,401,388	+				-3.3
1,401,392	-				-1.7
1,401,392	-				-3.1
1,401,392	-				-2.7
1,401,392	-				-2.8
1,401,393	+				-2.3
1,401,393	+				-1.2
1,401,394	-				-0.6
1,401,436	+				-3.5
1,401,438	+				-2.3
1,401,494	-		MMJJ_RS07660	0.12	-1.9
1,401,494	-		MMJJ_RS07660	0.12	-1.3
1,401,577	-		MMJJ_RS07660	0.30	-3.1
1,401,589	-		MMJJ_RS07660	0.33	-1.9
1,401,602	+		MMJJ_RS07660	0.36	-2.9
1,401,602	+		MMJJ_RS07660	0.36	-1.9
1,401,604	-		MMJJ_RS07660	0.36	-2.2
1,401,605	+		MMJJ_RS07660	0.36	-2.3
1,401,613	-		MMJJ_RS07660	0.38	-1.0
1,401,613	-		MMJJ_RS07660	0.38	-0.2
1,401,614	+		MMJJ_RS07660	0.38	-2.5
1,401,615	-		MMJJ_RS07660	0.38	-1.6
1,401,616	+		MMJJ_RS07660	0.39	-2.7
1,401,616	+		MMJJ_RS07660	0.39	-0.5
1,401,616	+		MMJJ_RS07660	0.39	-1.6
1,401,616	+		MMJJ_RS07660	0.39	-2.7
1,401,645	+		MMJJ_RS07660	0.45	-2.6
1,401,707	+		MMJJ_RS07660	0.59	-2.0
1,401,833	-		MMJJ_RS07660	0.87	-2.4
1,401,853	-				-1.8
1,401,853	-				-4.6
1,401,862	-				-3.6
1,401,863	+				-2.3
1,401,886	-				-3.0
1,401,941	+				-1.9
1,401,955	-				-1.1
1,401,956	+				-1.7
1,401,956	+				-2.5
1,401,960	+				-3.7
1,401,976	-				+0.4
1,401,976	-				-1.3
1,401,985	-				-3.2
1,401,986	+				-2.3
1,401,995	-				-1.5
1,401,996	+				-2.6
1,402,009	-				-3.0
1,402,009	-				-2.5
1,402,014	-				-3.6
1,402,017	-				-1.7
1,402,018	+				-3.2
1,402,018	+				-3.9
1,402,018	+				-2.3
1,402,019	-				-2.0
1,402,019	-				-2.4
1,402,019	-				-1.2
1,402,019	-				-4.1
1,402,020	+				-1.3
1,402,020	+				-2.7
1,402,020	+				-2.4
1,402,020	+				-3.0
1,402,020	+				-2.3
1,402,023	-				-2.2
1,402,023	-				-3.8
1,402,024	+				-1.8
1,402,024	+				-1.8
1,402,024	+				-3.0
1,402,024	+				-1.8
1,402,024	+				-2.2
1,402,027	-				-3.2
1,402,027	-				-2.5
1,402,027	-				-1.9
1,402,027	-				-1.6
1,402,027	-				-3.2
1,402,027	-				-2.1
1,402,027	-				-2.0
1,402,027	-				-1.8
1,402,027	-				-3.5
1,402,027	-				-2.8
1,402,028	+				-4.1
1,402,028	+				-1.7
1,402,028	+				-2.8
1,402,028	+				-3.6
1,402,028	+				-3.7
1,402,028	+				-0.0
1,402,029	-				-5.0
1,402,030	+				-1.3
1,402,030	+				-2.7
1,402,030	+				-1.8
1,402,033	-				-4.1
1,402,034	+				-2.2
1,402,050	-				-2.0
1,402,051	+				-0.8
1,402,063	-				-3.4
1,402,063	-				-2.3
1,402,063	-				-4.2
1,402,064	+				-3.5
1,402,078	-				-2.2
1,402,083	-				-1.8
1,402,083	-				-2.7
1,402,084	+				-3.9
1,402,084	+				-4.2
1,402,087	-				-3.7
1,402,093	-				-3.7
1,402,096	-				-1.6
1,402,168	-				-3.4
1,402,169	+				-1.5
1,402,170	-				-1.7
1,402,170	-				-1.4
1,402,170	-				-2.3
1,402,170	-				-1.2
1,402,171	+				-2.5
1,402,175	+				-3.2
1,402,177	+				-3.1
1,402,193	-				-4.4
1,402,201	-				-3.2
1,402,259	+				-2.3
1,402,296	+				-2.6
1,402,331	-				-3.5
1,402,331	-				-0.8
1,402,341	-				-4.0
1,402,341	-				-1.9
1,402,341	-				-2.6
1,402,342	+				-0.6
1,402,371	+				-3.4
1,402,371	+				-2.7