Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07650

Experiment: formate N-free with 10mM Ammonium chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	formate N-free with 10mM Ammonium chloride
1,399,061	+		MMJJ_RS07640	0.86	-2.0
1,399,073	+		MMJJ_RS07640	0.87	-3.0
1,399,093	-		MMJJ_RS07640	0.88	-2.0
1,399,119	+		MMJJ_RS07640	0.89	-0.4
1,399,119	+		MMJJ_RS07640	0.89	-2.1
1,399,144	-				-0.9
1,399,158	-				-1.9
1,399,221	+				-0.9
1,399,283	-				-3.0
1,399,283	-				-1.8
1,399,323	-				+0.1
1,399,329	+				+0.8
1,399,333	-				+0.2
1,399,333	-				+0.9
1,399,337	+				+0.6
1,399,380	-				+0.1
1,399,381	+				-1.8
1,399,434	-				+0.2
1,399,446	-				+0.6
1,399,468	-				-0.7
1,399,469	+				+0.0
1,399,470	-				-0.1
1,399,470	-				-0.6
1,399,471	+				+0.1
1,399,471	+				+0.1
1,399,471	+				+0.6
1,399,471	+				-0.5
1,399,472	-				+1.0
1,399,472	-				+0.3
1,399,472	-				-2.2
1,399,473	+				+0.1
1,399,473	+				+1.8
1,399,473	+				-1.1
1,399,473	+				-0.1
1,399,474	-				-0.6
1,399,474	-				-0.8
1,399,475	+				-0.8
1,399,475	+				+0.3
1,399,493	+				-0.3
1,399,494	-				+0.1
1,399,494	-				-0.1
1,399,495	+				-0.5
1,399,517	-				+0.2
1,399,517	-				-0.6
1,399,517	-				+0.7
1,399,517	-				-1.0
1,399,517	-				-0.3
1,399,517	-				-0.1
1,399,517	-				-0.4
1,399,518	+				-0.0
1,399,518	+				+0.8
1,399,518	+				+0.3
1,399,518	+				+0.6
1,399,518	+				+0.3
1,399,519	-				+0.1
1,399,519	-				+1.2
1,399,519	-				-0.8
1,399,519	-				-0.2
1,399,519	-				+0.3
1,399,519	-				+0.2
1,399,519	-				+0.4
1,399,519	-				+0.0
1,399,520	+				+0.1
1,399,520	+				-0.4
1,399,520	+				-0.2
1,399,520	+				-1.5
1,399,520	+				+0.9
1,399,520	+				-0.9
1,399,520	+				+0.9
1,399,520	+				-0.7
1,399,520	+				-0.3
1,399,521	-				+0.5
1,399,521	-				+0.7
1,399,521	-				-0.4
1,399,521	-				-0.1
1,399,522	+				+0.1
1,399,522	+				+0.1
1,399,522	+				+0.4
1,399,522	+				-0.4
1,399,522	+				+0.1
1,399,558	+				+0.2
1,399,561	-		MMJJ_RS07645	0.11	-0.4
1,399,562	+		MMJJ_RS07645	0.11	-0.2
1,399,562	+		MMJJ_RS07645	0.11	-1.0
1,399,564	-		MMJJ_RS07645	0.12	+0.1
1,399,564	-		MMJJ_RS07645	0.12	-0.2
1,399,564	-		MMJJ_RS07645	0.12	+0.0
1,399,596	+		MMJJ_RS07645	0.25	+0.1
1,399,598	-		MMJJ_RS07645	0.26	-0.0
1,399,598	-		MMJJ_RS07645	0.26	+0.0
1,399,598	-		MMJJ_RS07645	0.26	+1.0
1,399,598	-		MMJJ_RS07645	0.26	-1.5
1,399,598	-		MMJJ_RS07645	0.26	+0.3
1,399,598	-		MMJJ_RS07645	0.26	-0.4
1,399,598	-		MMJJ_RS07645	0.26	-0.0
1,399,598	-		MMJJ_RS07645	0.26	-0.4
1,399,599	+		MMJJ_RS07645	0.26	-0.6
1,399,599	+		MMJJ_RS07645	0.26	-0.2
1,399,600	-		MMJJ_RS07645	0.26	+0.5
1,399,600	-		MMJJ_RS07645	0.26	-0.7
1,399,600	-		MMJJ_RS07645	0.26	-0.4
1,399,601	+		MMJJ_RS07645	0.27	-0.5
1,399,608	-		MMJJ_RS07645	0.30	+0.3
1,399,609	+		MMJJ_RS07645	0.30	-0.4
1,399,633	+		MMJJ_RS07645	0.40	+1.2
1,399,690	+		MMJJ_RS07645	0.63	-1.2
1,399,690	+		MMJJ_RS07645	0.63	+0.4
1,399,725	+		MMJJ_RS07645	0.77	-0.5
1,399,778	-				-3.2
1,399,809	-				-1.3
1,399,821	-				+0.5
1,399,909	+				-0.5
1,399,918	-				+0.5
1,399,918	-				-0.4
1,399,919	+				+1.1
1,399,929	-				+0.6
1,399,953	-				-1.3
1,399,953	-				-0.8
1,399,953	-				-2.1
1,399,953	-				-2.0
1,399,953	-				-0.6
1,399,953	-				-1.5
1,399,953	-				-0.9
1,399,954	+				-0.3
1,399,954	+				-1.5
1,399,954	+				+0.6
1,399,955	-				-1.2
1,399,955	-				-0.3
1,399,956	+				-1.0
1,399,958	-				-1.1
1,399,958	-				-0.6
1,399,958	-				-1.1
1,399,959	+				-1.4
1,399,959	+				-0.8
1,399,959	+				-2.6
1,399,960	-				-1.8
1,399,960	-				-2.0
1,399,960	-				-1.2
1,399,960	-				-1.2
1,399,960	-				-0.9
1,399,960	-				-1.2
1,399,960	-				-1.6
1,399,961	+				-0.9
1,399,961	+				-1.3
1,399,962	-				-1.1
1,399,962	-				-0.0
1,399,962	-				-1.6
1,399,962	-				-1.3
1,399,963	+				-2.2
1,399,963	+				-2.1
1,399,963	+				-0.3
1,399,965	-				-0.2
1,399,965	-				-0.7
1,399,965	-				-1.8
1,399,965	-				-2.3
1,399,965	-				-1.3
1,399,965	-				-0.6
1,399,966	+				-1.3
1,399,966	+				-1.7
1,399,969	-				-2.7
1,399,969	-				-1.3
1,399,969	-				-2.1
1,399,970	+				-1.8
1,399,970	+				-1.6
1,399,970	+				-1.2
1,399,970	+				-1.1
1,399,973	-				-1.4
1,399,973	-				-0.3
1,399,973	-				-1.4
1,399,974	+				-1.1
1,399,974	+				-1.0
1,399,974	+				-2.3
1,399,974	+				-0.6
1,399,974	+				-1.5
1,399,974	+				-1.8
1,399,984	+				-1.5
1,400,018	-				-2.3
1,400,021	-				-2.0
1,400,022	+				-2.2
1,400,022	+				-2.9
1,400,032	-				-2.0
1,400,032	-				-2.3
1,400,033	+				-2.2
1,400,080	-				-2.0
1,400,081	+				-1.1
1,400,081	+				-0.6
1,400,094	+				-1.4
1,400,136	-		MMJJ_RS07650	0.13	-1.1
1,400,136	-		MMJJ_RS07650	0.13	-2.1
1,400,137	+		MMJJ_RS07650	0.14	-1.9
1,400,137	+		MMJJ_RS07650	0.14	-0.5
1,400,137	+		MMJJ_RS07650	0.14	-2.7
1,400,170	-		MMJJ_RS07650	0.18	-2.7
1,400,170	-		MMJJ_RS07650	0.18	-1.9
1,400,170	-		MMJJ_RS07650	0.18	-1.7
1,400,171	+		MMJJ_RS07650	0.18	-1.6
1,400,210	-		MMJJ_RS07650	0.22	+0.0
1,400,230	-		MMJJ_RS07650	0.25	-1.6
1,400,279	-		MMJJ_RS07650	0.31	-1.1
1,400,288	-		MMJJ_RS07650	0.32	-2.0
1,400,288	-		MMJJ_RS07650	0.32	-2.6
1,400,288	-		MMJJ_RS07650	0.32	-2.7
1,400,289	+		MMJJ_RS07650	0.32	-1.5
1,400,299	-		MMJJ_RS07650	0.33	-1.6
1,400,331	-		MMJJ_RS07650	0.37	-1.2
1,400,332	+		MMJJ_RS07650	0.37	-1.6
1,400,332	+		MMJJ_RS07650	0.37	-1.8
1,400,341	-		MMJJ_RS07650	0.38	-2.6
1,400,341	-		MMJJ_RS07650	0.38	-0.9
1,400,342	+		MMJJ_RS07650	0.38	-3.0
1,400,342	+		MMJJ_RS07650	0.38	-1.4
1,400,342	+		MMJJ_RS07650	0.38	-1.7
1,400,344	-		MMJJ_RS07650	0.39	-0.3
1,400,351	+		MMJJ_RS07650	0.40	-1.8
1,400,358	-		MMJJ_RS07650	0.40	-1.7
1,400,359	+		MMJJ_RS07650	0.40	-2.3
1,400,359	+		MMJJ_RS07650	0.40	-2.1
1,400,359	+		MMJJ_RS07650	0.40	-1.5
1,400,359	+		MMJJ_RS07650	0.40	-1.2
1,400,359	+		MMJJ_RS07650	0.40	-1.7
1,400,359	+		MMJJ_RS07650	0.40	-2.2
1,400,365	+		MMJJ_RS07650	0.41	-2.3
1,400,365	+		MMJJ_RS07650	0.41	-1.8
1,400,392	-		MMJJ_RS07650	0.44	-2.6
1,400,394	-		MMJJ_RS07650	0.45	-1.6
1,400,395	+		MMJJ_RS07650	0.45	-1.8
1,400,395	+		MMJJ_RS07650	0.45	-0.8
1,400,459	+		MMJJ_RS07650	0.53	-2.8
1,400,511	-		MMJJ_RS07650	0.59	-3.1
1,400,512	+		MMJJ_RS07650	0.59	-2.5
1,400,512	+		MMJJ_RS07650	0.59	-1.9
1,400,558	-		MMJJ_RS07650	0.65	-2.3
1,400,558	-		MMJJ_RS07650	0.65	+0.0
1,400,567	-		MMJJ_RS07650	0.66	-1.6
1,400,575	-		MMJJ_RS07650	0.67	-2.1
1,400,576	+		MMJJ_RS07650	0.67	-1.7
1,400,580	+		MMJJ_RS07650	0.67	-1.5
1,400,593	-		MMJJ_RS07650	0.69	-0.1
1,400,593	-		MMJJ_RS07650	0.69	-2.8
1,400,593	-		MMJJ_RS07650	0.69	-2.6
1,400,593	-		MMJJ_RS07650	0.69	-3.4
1,400,594	+		MMJJ_RS07650	0.69	-1.9
1,400,594	+		MMJJ_RS07650	0.69	-1.6
1,400,594	+		MMJJ_RS07650	0.69	-1.9
1,400,697	-		MMJJ_RS07650	0.81	-2.2
1,400,697	-		MMJJ_RS07650	0.81	-1.9
1,400,697	-		MMJJ_RS07650	0.81	-2.6
1,400,698	+		MMJJ_RS07650	0.82	-1.8
1,400,698	+		MMJJ_RS07650	0.82	-2.6
1,400,698	+		MMJJ_RS07650	0.82	-1.4
1,400,698	+		MMJJ_RS07650	0.82	-1.9
1,400,703	+		MMJJ_RS07650	0.82	+0.2
1,400,804	+				-3.1
1,400,818	-				-1.5
1,400,818	-				-3.5
1,400,818	-				-1.5
1,400,818	-				-1.3
1,400,819	+				-1.7
1,400,819	+				-2.0
1,400,819	+				-1.1
1,400,819	+				-0.7
1,400,820	-				-4.6
1,400,821	+				-2.4
1,400,860	-				-3.3
1,400,861	+				-2.7
1,400,864	+				-0.7
1,400,884	+				-3.8
1,400,884	+				-2.3
1,400,884	+				-1.9
1,400,895	+				-2.1
1,400,900	-				-1.0
1,400,901	+				-2.4
1,400,901	+				-1.7
1,400,906	-				-2.7
1,400,906	-				-2.9
1,400,907	+				-2.8
1,400,949	-		MMJJ_RS07655	0.12	-2.1
1,400,950	+		MMJJ_RS07655	0.12	+0.6
1,400,963	-		MMJJ_RS07655	0.14	-1.6
1,400,963	-		MMJJ_RS07655	0.14	-2.3
1,400,963	-		MMJJ_RS07655	0.14	-1.4
1,400,964	+		MMJJ_RS07655	0.14	-3.6
1,400,964	+		MMJJ_RS07655	0.14	-2.7
1,400,992	-		MMJJ_RS07655	0.20	+0.4
1,400,992	-		MMJJ_RS07655	0.20	-1.6
1,400,992	-		MMJJ_RS07655	0.20	-3.2
1,400,994	-		MMJJ_RS07655	0.20	-3.1
1,400,995	+		MMJJ_RS07655	0.20	-2.6
1,401,000	-		MMJJ_RS07655	0.21	-3.3
1,401,001	+		MMJJ_RS07655	0.21	-3.0
1,401,018	+		MMJJ_RS07655	0.25	-2.1
1,401,018	+		MMJJ_RS07655	0.25	-1.6
1,401,036	-		MMJJ_RS07655	0.28	-2.0
1,401,036	-		MMJJ_RS07655	0.28	-2.9
1,401,036	-		MMJJ_RS07655	0.28	-2.7
1,401,041	-		MMJJ_RS07655	0.29	-1.8
1,401,082	+		MMJJ_RS07655	0.37	-3.2
1,401,090	+		MMJJ_RS07655	0.38	-3.5
1,401,113	+		MMJJ_RS07655	0.42	-2.0
1,401,113	+		MMJJ_RS07655	0.42	-2.8
1,401,116	-		MMJJ_RS07655	0.43	-4.0
1,401,116	-		MMJJ_RS07655	0.43	-0.2
1,401,116	-		MMJJ_RS07655	0.43	-2.5
1,401,116	-		MMJJ_RS07655	0.43	-1.9
1,401,116	-		MMJJ_RS07655	0.43	-1.3
1,401,117	+		MMJJ_RS07655	0.43	-2.4
1,401,117	+		MMJJ_RS07655	0.43	-2.6
1,401,117	+		MMJJ_RS07655	0.43	-3.8
1,401,117	+		MMJJ_RS07655	0.43	-3.8
1,401,117	+		MMJJ_RS07655	0.43	-3.0
1,401,117	+		MMJJ_RS07655	0.43	-3.6
1,401,117	+		MMJJ_RS07655	0.43	-4.8
1,401,117	+		MMJJ_RS07655	0.43	-3.7
1,401,117	+		MMJJ_RS07655	0.43	-2.4
1,401,117	+		MMJJ_RS07655	0.43	-2.8
1,401,133	-		MMJJ_RS07655	0.46	-2.5
1,401,138	-		MMJJ_RS07655	0.47	-3.0
1,401,139	+		MMJJ_RS07655	0.47	-2.3
1,401,139	+		MMJJ_RS07655	0.47	-2.0
1,401,139	+		MMJJ_RS07655	0.47	-3.4
1,401,139	+		MMJJ_RS07655	0.47	-2.0
1,401,139	+		MMJJ_RS07655	0.47	-2.2
1,401,139	+		MMJJ_RS07655	0.47	-2.6
1,401,153	-		MMJJ_RS07655	0.50	-3.2
1,401,160	+		MMJJ_RS07655	0.51	-2.8
1,401,160	+		MMJJ_RS07655	0.51	-4.1
1,401,165	+		MMJJ_RS07655	0.52	-2.8
1,401,203	-		MMJJ_RS07655	0.59	-0.0
1,401,203	-		MMJJ_RS07655	0.59	-3.2
1,401,215	-		MMJJ_RS07655	0.61	-2.1
1,401,241	+		MMJJ_RS07655	0.66	-1.8
1,401,260	-		MMJJ_RS07655	0.70	-1.4
1,401,261	+		MMJJ_RS07655	0.70	-2.3
1,401,261	+		MMJJ_RS07655	0.70	-2.8
1,401,310	+		MMJJ_RS07655	0.79	-2.9
1,401,314	-		MMJJ_RS07655	0.80	-2.6
1,401,314	-		MMJJ_RS07655	0.80	-1.8
1,401,315	+		MMJJ_RS07655	0.80	-3.8
1,401,315	+		MMJJ_RS07655	0.80	-1.6
1,401,315	+		MMJJ_RS07655	0.80	-3.8
1,401,315	+		MMJJ_RS07655	0.80	-1.6
1,401,315	+		MMJJ_RS07655	0.80	-1.6
1,401,315	+		MMJJ_RS07655	0.80	-3.1
1,401,332	-		MMJJ_RS07655	0.83	-2.7
1,401,333	+		MMJJ_RS07655	0.84	-1.4
1,401,333	+		MMJJ_RS07655	0.84	-4.3
1,401,336	-		MMJJ_RS07655	0.84	-2.2
1,401,360	+		MMJJ_RS07655	0.89	-2.5
1,401,388	+				-3.5
1,401,388	+				-3.3
1,401,392	-				-1.7
1,401,392	-				-3.1
1,401,392	-				-2.7
1,401,392	-				-2.8
1,401,393	+				-2.3
1,401,393	+				-1.2
1,401,394	-				-0.6
1,401,436	+				-3.5
1,401,438	+				-2.3
1,401,494	-		MMJJ_RS07660	0.12	-1.9
1,401,494	-		MMJJ_RS07660	0.12	-1.3
1,401,577	-		MMJJ_RS07660	0.30	-3.1
1,401,589	-		MMJJ_RS07660	0.33	-1.9
1,401,602	+		MMJJ_RS07660	0.36	-2.9
1,401,602	+		MMJJ_RS07660	0.36	-1.9
1,401,604	-		MMJJ_RS07660	0.36	-2.2
1,401,605	+		MMJJ_RS07660	0.36	-2.3
1,401,613	-		MMJJ_RS07660	0.38	-1.0
1,401,613	-		MMJJ_RS07660	0.38	-0.2
1,401,614	+		MMJJ_RS07660	0.38	-2.5
1,401,615	-		MMJJ_RS07660	0.38	-1.6
1,401,616	+		MMJJ_RS07660	0.39	-2.7
1,401,616	+		MMJJ_RS07660	0.39	-0.5
1,401,616	+		MMJJ_RS07660	0.39	-1.6
1,401,616	+		MMJJ_RS07660	0.39	-2.7
1,401,645	+		MMJJ_RS07660	0.45	-2.6
1,401,707	+		MMJJ_RS07660	0.59	-2.0
1,401,833	-		MMJJ_RS07660	0.87	-2.4