Experiment: formate N-free with 10mM Ammonium chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS05585 and MMJJ_RS09310 are separated by 22 nucleotides MMJJ_RS09310 and MMJJ_RS05590 are separated by 96 nucleotides MMJJ_RS05590 and MMJJ_RS05595 are separated by 11 nucleotides MMJJ_RS05595 and MMJJ_RS05600 are separated by 170 nucleotides
MMJJ_RS05585: MMJJ_RS05585 - hypothetical protein, at 1,041,710 to 1,042,606
_RS05585
MMJJ_RS09310: MMJJ_RS09310 - tRNA-Sec, at 1,042,629 to 1,042,718
_RS09310
MMJJ_RS05590: MMJJ_RS05590 - homoserine dehydrogenase, at 1,042,815 to 1,043,828
_RS05590
MMJJ_RS05595: MMJJ_RS05595 - hypothetical protein, at 1,043,840 to 1,044,322
_RS05595
MMJJ_RS05600: MMJJ_RS05600 - sodium:solute symporter family protein, at 1,044,493 to 1,046,094
_RS05600
Position (kb)
1042
1043
1044 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1041.838 kb on - strand, within MMJJ_RS05585 at 1041.838 kb on - strand, within MMJJ_RS05585 at 1041.850 kb on + strand, within MMJJ_RS05585 at 1041.944 kb on - strand, within MMJJ_RS05585 at 1041.944 kb on - strand, within MMJJ_RS05585 at 1041.945 kb on + strand, within MMJJ_RS05585 at 1041.945 kb on + strand, within MMJJ_RS05585 at 1041.945 kb on + strand, within MMJJ_RS05585 at 1041.945 kb on + strand, within MMJJ_RS05585 at 1041.945 kb on + strand, within MMJJ_RS05585 at 1041.946 kb on - strand, within MMJJ_RS05585 at 1041.946 kb on - strand, within MMJJ_RS05585 at 1041.947 kb on + strand, within MMJJ_RS05585 at 1041.949 kb on - strand, within MMJJ_RS05585 at 1041.950 kb on + strand, within MMJJ_RS05585 at 1041.950 kb on + strand, within MMJJ_RS05585 at 1041.951 kb on - strand, within MMJJ_RS05585 at 1041.951 kb on - strand, within MMJJ_RS05585 at 1041.952 kb on + strand, within MMJJ_RS05585 at 1041.952 kb on + strand, within MMJJ_RS05585 at 1041.952 kb on + strand, within MMJJ_RS05585 at 1041.952 kb on + strand, within MMJJ_RS05585 at 1041.954 kb on + strand, within MMJJ_RS05585 at 1042.223 kb on - strand, within MMJJ_RS05585 at 1042.250 kb on - strand, within MMJJ_RS05585 at 1042.255 kb on - strand, within MMJJ_RS05585 at 1042.345 kb on - strand, within MMJJ_RS05585 at 1042.373 kb on + strand, within MMJJ_RS05585 at 1042.385 kb on + strand, within MMJJ_RS05585 at 1042.466 kb on - strand, within MMJJ_RS05585 at 1042.497 kb on - strand, within MMJJ_RS05585 at 1042.622 kb on - strand at 1042.625 kb on + strand at 1042.750 kb on - strand at 1042.750 kb on - strand at 1042.752 kb on - strand at 1042.752 kb on - strand at 1042.753 kb on + strand at 1042.754 kb on - strand at 1042.754 kb on - strand at 1042.754 kb on - strand at 1042.754 kb on - strand at 1042.755 kb on + strand at 1042.769 kb on + strand at 1042.780 kb on + strand at 1042.786 kb on - strand at 1042.787 kb on + strand at 1042.823 kb on - strand at 1042.826 kb on - strand at 1042.838 kb on - strand at 1042.838 kb on - strand at 1042.839 kb on + strand at 1042.842 kb on - strand at 1042.878 kb on + strand at 1043.112 kb on + strand, within MMJJ_RS05590 at 1043.118 kb on - strand, within MMJJ_RS05590 at 1043.310 kb on - strand, within MMJJ_RS05590 at 1043.401 kb on + strand, within MMJJ_RS05590 at 1043.818 kb on + strand at 1043.898 kb on - strand, within MMJJ_RS05595 at 1043.924 kb on - strand, within MMJJ_RS05595 at 1043.924 kb on - strand, within MMJJ_RS05595 at 1044.139 kb on - strand, within MMJJ_RS05595 at 1044.140 kb on + strand at 1044.238 kb on - strand, within MMJJ_RS05595 at 1044.258 kb on + strand, within MMJJ_RS05595 at 1044.305 kb on - strand at 1044.349 kb on - strand at 1044.354 kb on - strand at 1044.354 kb on - strand at 1044.354 kb on - strand at 1044.354 kb on - strand at 1044.355 kb on + strand at 1044.355 kb on + strand at 1044.355 kb on + strand at 1044.355 kb on + strand at 1044.355 kb on + strand at 1044.355 kb on + strand at 1044.358 kb on - strand at 1044.359 kb on + strand at 1044.359 kb on + strand at 1044.362 kb on + strand at 1044.367 kb on - strand at 1044.378 kb on - strand at 1044.378 kb on - strand at 1044.378 kb on - strand at 1044.378 kb on - strand at 1044.389 kb on - strand at 1044.389 kb on - strand at 1044.390 kb on + strand at 1044.391 kb on - strand at 1044.392 kb on + strand at 1044.395 kb on - strand at 1044.451 kb on + strand at 1044.495 kb on + strand at 1044.541 kb on + strand at 1044.604 kb on - strand at 1044.605 kb on + strand at 1044.605 kb on + strand at 1044.698 kb on + strand, within MMJJ_RS05600 at 1044.698 kb on + strand, within MMJJ_RS05600 at 1044.700 kb on - strand, within MMJJ_RS05600 at 1044.701 kb on + strand, within MMJJ_RS05600 at 1044.781 kb on - strand, within MMJJ_RS05600 at 1044.781 kb on - strand, within MMJJ_RS05600 at 1044.788 kb on - strand, within MMJJ_RS05600 at 1044.789 kb on + strand, within MMJJ_RS05600 at 1044.810 kb on - strand, within MMJJ_RS05600
Per-strain Table
Position Strand Gene LocusTag Fraction formate N-free with 10mM Ammonium chloride remove 1,041,838 - MMJJ_RS05585 0.14 +0.3 1,041,838 - MMJJ_RS05585 0.14 +0.7 1,041,850 + MMJJ_RS05585 0.16 +0.2 1,041,944 - MMJJ_RS05585 0.26 +0.6 1,041,944 - MMJJ_RS05585 0.26 -0.0 1,041,945 + MMJJ_RS05585 0.26 -0.2 1,041,945 + MMJJ_RS05585 0.26 -0.3 1,041,945 + MMJJ_RS05585 0.26 +0.0 1,041,945 + MMJJ_RS05585 0.26 +0.1 1,041,945 + MMJJ_RS05585 0.26 -0.3 1,041,946 - MMJJ_RS05585 0.26 -0.1 1,041,946 - MMJJ_RS05585 0.26 -2.1 1,041,947 + MMJJ_RS05585 0.26 +1.1 1,041,949 - MMJJ_RS05585 0.27 +0.4 1,041,950 + MMJJ_RS05585 0.27 +0.7 1,041,950 + MMJJ_RS05585 0.27 -0.6 1,041,951 - MMJJ_RS05585 0.27 +0.5 1,041,951 - MMJJ_RS05585 0.27 -0.7 1,041,952 + MMJJ_RS05585 0.27 +0.7 1,041,952 + MMJJ_RS05585 0.27 +0.3 1,041,952 + MMJJ_RS05585 0.27 +0.1 1,041,952 + MMJJ_RS05585 0.27 +0.2 1,041,954 + MMJJ_RS05585 0.27 -0.7 1,042,223 - MMJJ_RS05585 0.57 +0.7 1,042,250 - MMJJ_RS05585 0.60 +0.3 1,042,255 - MMJJ_RS05585 0.61 -0.2 1,042,345 - MMJJ_RS05585 0.71 +1.3 1,042,373 + MMJJ_RS05585 0.74 -0.0 1,042,385 + MMJJ_RS05585 0.75 -0.3 1,042,466 - MMJJ_RS05585 0.84 +0.7 1,042,497 - MMJJ_RS05585 0.88 +0.4 1,042,622 - -1.2 1,042,625 + -0.2 1,042,750 - -1.4 1,042,750 - -0.9 1,042,752 - -0.1 1,042,752 - -1.2 1,042,753 + -1.1 1,042,754 - -0.6 1,042,754 - -0.1 1,042,754 - -0.5 1,042,754 - -0.9 1,042,755 + -1.8 1,042,769 + +0.4 1,042,780 + -0.4 1,042,786 - +0.3 1,042,787 + -2.1 1,042,823 - +0.6 1,042,826 - +0.6 1,042,838 - -0.3 1,042,838 - -0.5 1,042,839 + -1.1 1,042,842 - -1.7 1,042,878 + -2.1 1,043,112 + MMJJ_RS05590 0.29 -0.4 1,043,118 - MMJJ_RS05590 0.30 -2.3 1,043,310 - MMJJ_RS05590 0.49 -3.3 1,043,401 + MMJJ_RS05590 0.58 -3.5 1,043,818 + -0.9 1,043,898 - MMJJ_RS05595 0.12 -0.8 1,043,924 - MMJJ_RS05595 0.17 -1.9 1,043,924 - MMJJ_RS05595 0.17 -2.7 1,044,139 - MMJJ_RS05595 0.62 -0.8 1,044,140 + -1.4 1,044,238 - MMJJ_RS05595 0.82 -2.5 1,044,258 + MMJJ_RS05595 0.87 -0.2 1,044,305 - -1.4 1,044,349 - -3.0 1,044,354 - -1.6 1,044,354 - -1.9 1,044,354 - +1.9 1,044,354 - -4.4 1,044,355 + -2.6 1,044,355 + -1.1 1,044,355 + -3.4 1,044,355 + -4.1 1,044,355 + -3.3 1,044,355 + -1.7 1,044,358 - -2.1 1,044,359 + -1.4 1,044,359 + -2.3 1,044,362 + -0.7 1,044,367 - -1.2 1,044,378 - -0.2 1,044,378 - -0.4 1,044,378 - +0.1 1,044,378 - -0.2 1,044,389 - -0.8 1,044,389 - -0.9 1,044,390 + -2.3 1,044,391 - +0.9 1,044,392 + +0.2 1,044,395 - -0.0 1,044,451 + -0.2 1,044,495 + -0.8 1,044,541 + -0.6 1,044,604 - -0.1 1,044,605 + -2.0 1,044,605 + +1.4 1,044,698 + MMJJ_RS05600 0.13 +0.3 1,044,698 + MMJJ_RS05600 0.13 -0.1 1,044,700 - MMJJ_RS05600 0.13 +0.7 1,044,701 + MMJJ_RS05600 0.13 +0.3 1,044,781 - MMJJ_RS05600 0.18 +0.3 1,044,781 - MMJJ_RS05600 0.18 +1.0 1,044,788 - MMJJ_RS05600 0.18 +0.6 1,044,789 + MMJJ_RS05600 0.18 -0.8 1,044,810 - MMJJ_RS05600 0.20 +0.1
Or see this region's nucleotide sequence