Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05450

Experiment: formate N-free with 10mM Ammonium chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	formate N-free with 10mM Ammonium chloride
1,013,725	-				-0.7
1,013,847	-				-1.4
1,013,847	-		MMJJ_RS05445	0.71	-2.2
1,013,852	-				-1.4
1,013,864	-		MMJJ_RS05445	0.73	-1.3
1,013,864	-				-1.4
1,013,983	+		MMJJ_RS05445	0.84	-1.1
1,014,015	-		MMJJ_RS05445	0.87	-2.4
1,014,097	+				-1.4
1,014,126	-				-0.1
1,014,126	-				-0.4
1,014,144	-				-0.1
1,014,144	-				+0.9
1,014,145	+				-1.0
1,014,145	+				-0.1
1,014,145	+				-0.0
1,014,145	+				-1.0
1,014,176	-				-0.1
1,014,192	-				-0.5
1,014,193	+				-0.3
1,014,197	-				+1.1
1,014,212	+				-3.4
1,014,223	-				-2.4
1,014,223	-				-4.1
1,014,223	-				-2.8
1,014,223	-				-3.8
1,014,224	+				-3.8
1,014,226	-				-4.4
1,014,226	-				-2.7
1,014,227	+				-5.1
1,014,230	-				-4.1
1,014,230	-				-2.4
1,014,231	+				-4.0
1,014,271	-				-3.4
1,014,272	+				-3.1
1,014,277	-				-3.7
1,014,285	-				-5.0
1,014,300	-				-2.6
1,014,300	-				-2.3
1,014,300	-				-4.2
1,014,318	-		MMJJ_RS05450	0.11	-0.7
1,014,322	-		MMJJ_RS05450	0.12	-4.3
1,014,322	-		MMJJ_RS05450	0.12	-3.4
1,014,322	-		MMJJ_RS05450	0.12	-4.1
1,014,322	-		MMJJ_RS05450	0.12	-4.1
1,014,323	+		MMJJ_RS05450	0.12	-3.3
1,014,323	+		MMJJ_RS05450	0.12	-4.7
1,014,386	+		MMJJ_RS05450	0.18	-2.8
1,014,388	-				-0.7
1,014,390	-		MMJJ_RS05450	0.18	-3.3
1,014,390	-		MMJJ_RS05450	0.18	-2.7
1,014,391	+		MMJJ_RS05450	0.18	-3.8
1,014,436	-		MMJJ_RS05450	0.23	-3.0
1,014,436	-		MMJJ_RS05450	0.23	-5.5
1,014,437	+		MMJJ_RS05450	0.23	-2.0
1,014,442	-		MMJJ_RS05450	0.23	-3.9
1,014,443	+		MMJJ_RS05450	0.23	-4.0
1,014,483	-		MMJJ_RS05450	0.27	-3.4
1,014,487	-		MMJJ_RS05450	0.27	-3.3
1,014,487	-		MMJJ_RS05450	0.27	-1.7
1,014,487	-		MMJJ_RS05450	0.27	-3.3
1,014,488	+		MMJJ_RS05450	0.27	-1.9
1,014,511	-		MMJJ_RS05450	0.30	-4.3
1,014,512	+		MMJJ_RS05450	0.30	-4.9
1,014,512	+		MMJJ_RS05450	0.30	-3.1
1,014,512	+		MMJJ_RS05450	0.30	-4.2
1,014,569	-		MMJJ_RS05450	0.35	-3.7
1,014,569	-		MMJJ_RS05450	0.35	-2.9
1,014,569	-		MMJJ_RS05450	0.35	-3.9
1,014,570	+		MMJJ_RS05450	0.35	-4.7
1,014,571	-		MMJJ_RS05450	0.35	-2.3
1,014,571	-		MMJJ_RS05450	0.35	-3.5
1,014,571	-		MMJJ_RS05450	0.35	-2.8
1,014,583	-		MMJJ_RS05450	0.36	-3.6
1,014,629	+		MMJJ_RS05450	0.41	+0.3
1,014,652	-		MMJJ_RS05450	0.43	-4.1
1,014,689	-		MMJJ_RS05450	0.46	-4.5
1,014,761	+		MMJJ_RS05450	0.53	-1.4
1,014,764	+		MMJJ_RS05450	0.53	-5.2
1,014,790	-		MMJJ_RS05450	0.56	-4.7
1,014,791	+		MMJJ_RS05450	0.56	-3.9
1,014,944	-		MMJJ_RS05450	0.70	-3.3
1,015,021	-		MMJJ_RS05450	0.77	-3.7
1,015,022	+		MMJJ_RS05450	0.78	-5.0
1,015,022	+		MMJJ_RS05450	0.78	-1.5
1,015,030	+		MMJJ_RS05450	0.78	-3.8
1,015,051	-		MMJJ_RS05450	0.80	-3.5
1,015,071	-		MMJJ_RS05450	0.82	-4.3
1,015,072	+		MMJJ_RS05450	0.82	-3.2
1,015,075	-		MMJJ_RS05450	0.83	-3.3
1,015,106	-		MMJJ_RS05450	0.85	-3.6
1,015,106	-		MMJJ_RS05450	0.85	-3.1
1,015,106	-		MMJJ_RS05450	0.85	-1.3
1,015,106	-		MMJJ_RS05450	0.85	-3.0
1,015,107	+		MMJJ_RS05450	0.86	-2.0
1,015,107	+		MMJJ_RS05450	0.86	-4.7
1,015,107	+		MMJJ_RS05450	0.86	-3.3
1,015,107	+		MMJJ_RS05450	0.86	-3.6
1,015,107	+		MMJJ_RS05450	0.86	-3.7
1,015,107	+		MMJJ_RS05450	0.86	-3.9
1,015,114	-		MMJJ_RS05450	0.86	-1.7
1,015,165	-				-3.9
1,015,173	+				-3.3
1,015,176	-				-2.9
1,015,176	-				-2.1
1,015,176	-				-4.2
1,015,177	+				-3.9
1,015,214	+				-2.9
1,015,227	-				-4.4
1,015,228	+				-2.9
1,015,228	+				-3.2
1,015,254	-				-3.7
1,015,261	+				-5.0
1,015,275	+				+0.9
1,015,278	-				-2.0
1,015,279	+				-0.4
1,015,283	-				-0.6
1,015,284	+				-2.1
1,015,286	+				-1.5
1,015,288	-				+0.5
1,015,289	+				-1.6
1,015,341	-		MMJJ_RS05455	0.18	-0.0
1,015,341	-		MMJJ_RS05455	0.18	+0.2
1,015,350	-		MMJJ_RS05455	0.21	-2.6
1,015,350	-		MMJJ_RS05455	0.21	-0.8
1,015,354	-		MMJJ_RS05455	0.22	-0.6
1,015,354	-		MMJJ_RS05455	0.22	-0.5
1,015,433	-		MMJJ_RS05455	0.50	-1.2
1,015,433	-		MMJJ_RS05455	0.50	-0.5
1,015,434	+		MMJJ_RS05455	0.51	-0.4
1,015,436	-		MMJJ_RS05455	0.51	-0.1
1,015,436	-		MMJJ_RS05455	0.51	+0.2
1,015,436	-		MMJJ_RS05455	0.51	+0.0
1,015,436	-		MMJJ_RS05455	0.51	-1.1
1,015,436	-		MMJJ_RS05455	0.51	+0.5
1,015,436	-		MMJJ_RS05455	0.51	+0.4
1,015,437	+		MMJJ_RS05455	0.52	-0.1
1,015,437	+		MMJJ_RS05455	0.52	-0.2
1,015,437	+		MMJJ_RS05455	0.52	-1.4
1,015,437	+		MMJJ_RS05455	0.52	-0.8
1,015,437	+		MMJJ_RS05455	0.52	-1.3
1,015,437	+		MMJJ_RS05455	0.52	-0.6
1,015,437	+		MMJJ_RS05455	0.52	+0.1
1,015,437	+		MMJJ_RS05455	0.52	-0.0
1,015,437	+		MMJJ_RS05455	0.52	-1.2
1,015,438	-		MMJJ_RS05455	0.52	+0.5
1,015,438	-		MMJJ_RS05455	0.52	-2.1
1,015,438	-		MMJJ_RS05455	0.52	+0.2
1,015,438	-		MMJJ_RS05455	0.52	+0.7
1,015,438	-		MMJJ_RS05455	0.52	-0.9
1,015,438	-		MMJJ_RS05455	0.52	-0.4
1,015,438	-		MMJJ_RS05455	0.52	-0.1
1,015,438	-		MMJJ_RS05455	0.52	-0.1
1,015,438	-		MMJJ_RS05455	0.52	-0.5
1,015,438	-		MMJJ_RS05455	0.52	-0.1
1,015,438	-		MMJJ_RS05455	0.52	+0.1
1,015,438	-		MMJJ_RS05455	0.52	+0.3
1,015,438	-		MMJJ_RS05455	0.52	+0.1
1,015,438	-		MMJJ_RS05455	0.52	+0.2
1,015,438	-		MMJJ_RS05455	0.52	-0.7
1,015,438	-		MMJJ_RS05455	0.52	+0.2
1,015,438	-		MMJJ_RS05455	0.52	-0.8
1,015,438	-		MMJJ_RS05455	0.52	-0.6
1,015,439	+		MMJJ_RS05455	0.52	-1.7
1,015,439	+		MMJJ_RS05455	0.52	-1.5
1,015,439	+		MMJJ_RS05455	0.52	-0.9
1,015,439	+		MMJJ_RS05455	0.52	+0.4
1,015,439	+		MMJJ_RS05455	0.52	+0.3
1,015,439	+		MMJJ_RS05455	0.52	-0.5
1,015,439	+		MMJJ_RS05455	0.52	-0.1
1,015,439	+		MMJJ_RS05455	0.52	-1.9
1,015,439	+		MMJJ_RS05455	0.52	-0.8
1,015,439	+		MMJJ_RS05455	0.52	-0.2
1,015,439	+		MMJJ_RS05455	0.52	-0.1
1,015,439	+		MMJJ_RS05455	0.52	-0.9
1,015,439	+		MMJJ_RS05455	0.52	-0.5
1,015,439	+		MMJJ_RS05455	0.52	+0.6
1,015,515	-		MMJJ_RS05455	0.79	-0.3
1,015,516	+		MMJJ_RS05455	0.80	+0.3
1,015,518	-		MMJJ_RS05455	0.80	-1.1
1,015,518	-		MMJJ_RS05455	0.80	-0.3
1,015,518	-		MMJJ_RS05455	0.80	-0.0
1,015,518	-		MMJJ_RS05455	0.80	+0.0
1,015,518	-		MMJJ_RS05455	0.80	+0.7
1,015,518	-		MMJJ_RS05455	0.80	-0.7
1,015,518	-		MMJJ_RS05455	0.80	+0.6
1,015,518	-		MMJJ_RS05455	0.80	-0.7
1,015,518	-		MMJJ_RS05455	0.80	-0.3
1,015,518	-		MMJJ_RS05455	0.80	-0.4
1,015,518	-		MMJJ_RS05455	0.80	-1.4
1,015,519	+		MMJJ_RS05455	0.81	+0.3
1,015,519	+		MMJJ_RS05455	0.81	+0.1
1,015,519	+		MMJJ_RS05455	0.81	-2.4
1,015,519	+		MMJJ_RS05455	0.81	-0.1
1,015,519	+		MMJJ_RS05455	0.81	-0.3
1,015,519	+		MMJJ_RS05455	0.81	-0.3
1,015,520	-		MMJJ_RS05455	0.81	-1.1
1,015,520	-		MMJJ_RS05455	0.81	-0.1
1,015,520	-		MMJJ_RS05455	0.81	-0.1
1,015,520	-		MMJJ_RS05455	0.81	-0.7
1,015,520	-		MMJJ_RS05455	0.81	-0.6
1,015,520	-		MMJJ_RS05455	0.81	-1.1
1,015,520	-		MMJJ_RS05455	0.81	+0.1
1,015,520	-		MMJJ_RS05455	0.81	-0.6
1,015,521	+		MMJJ_RS05455	0.82	-0.3
1,015,521	+		MMJJ_RS05455	0.82	-1.5
1,015,521	+		MMJJ_RS05455	0.82	-0.6
1,015,521	+		MMJJ_RS05455	0.82	-1.3
1,015,521	+		MMJJ_RS05455	0.82	-0.3
1,015,521	+		MMJJ_RS05455	0.82	-0.3
1,015,521	+		MMJJ_RS05455	0.82	-1.0
1,015,525	-		MMJJ_RS05455	0.83	-1.6
1,015,525	-		MMJJ_RS05455	0.83	+0.0
1,015,525	-		MMJJ_RS05455	0.83	-1.1
1,015,525	-		MMJJ_RS05455	0.83	-0.4
1,015,525	-		MMJJ_RS05455	0.83	+0.3
1,015,526	+		MMJJ_RS05455	0.83	-0.1
1,015,526	+		MMJJ_RS05455	0.83	-0.6
1,015,529	-		MMJJ_RS05455	0.84	+0.4
1,015,529	-		MMJJ_RS05455	0.84	-0.6
1,015,529	-		MMJJ_RS05455	0.84	-0.8
1,015,530	+		MMJJ_RS05455	0.85	+0.1
1,015,530	+		MMJJ_RS05455	0.85	-0.1
1,015,530	+		MMJJ_RS05455	0.85	+0.3
1,015,530	+		MMJJ_RS05455	0.85	+0.2
1,015,530	+		MMJJ_RS05455	0.85	-1.0
1,015,530	+		MMJJ_RS05455	0.85	-0.3
1,015,572	-				-0.1
1,015,573	+				-0.0
1,015,573	+				-0.6
1,015,573	+				-0.4
1,015,573	+				+0.3
1,015,589	-				+1.1
1,015,592	-				-0.6
1,015,592	-				-0.7
1,015,593	+				-0.1
1,015,593	+				-1.4
1,015,600	+				-1.1
1,015,604	-				-2.7
1,015,604	-				-2.5
1,015,604	-				+1.2
1,015,604	-				-0.2
1,015,605	+				+0.1
1,015,605	+				-0.2
1,015,605	+				-0.9
1,015,605	+				-1.7
1,015,609	-				-0.5
1,015,609	-				+0.1
1,015,609	-				+0.2
1,015,609	-				-1.2
1,015,609	-				+0.5
1,015,609	-				+0.6
1,015,609	-				+0.2
1,015,609	-				-0.9
1,015,611	-				-1.0
1,015,611	-				-1.1
1,015,611	-				+0.9
1,015,611	-				+0.3
1,015,611	-				+0.1
1,015,613	-				-0.0
1,015,613	-				+0.1
1,015,639	-				+1.2
1,015,650	-				+0.7