Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04865

Experiment: formate N-free with 10mM Ammonium chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	formate N-free with 10mM Ammonium chloride
910,286	+		MMJJ_RS04855	0.59	+0.3
910,289	-		MMJJ_RS04855	0.59	+0.7
910,290	+		MMJJ_RS04855	0.60	+0.5
910,308	-		MMJJ_RS04855	0.63	-0.3
910,309	+		MMJJ_RS04855	0.63	+1.5
910,309	+		MMJJ_RS04855	0.63	-0.3
910,309	+		MMJJ_RS04855	0.63	-0.4
910,309	+		MMJJ_RS04855	0.63	+0.3
910,322	-		MMJJ_RS04855	0.65	+0.3
910,380	+		MMJJ_RS04855	0.76	+0.7
910,395	+		MMJJ_RS04855	0.78	+0.2
910,412	+		MMJJ_RS04855	0.81	-0.5
910,416	+		MMJJ_RS04855	0.82	+0.4
910,422	+		MMJJ_RS04855	0.83	+0.5
910,422	+		MMJJ_RS04855	0.83	-0.1
910,467	+				-0.1
910,495	-				+0.1
910,495	-				+0.3
910,497	-				+0.0
910,497	-				-0.1
910,497	-				-0.4
910,497	-				-0.7
910,498	+				+0.6
910,498	+				-0.8
910,498	+				-0.4
910,534	+				-0.7
910,539	-				+0.1
910,540	+				-1.3
910,542	-				-0.1
910,543	+				-0.8
910,543	+				-0.3
910,555	-				+1.1
910,556	+				+0.2
910,562	-				-0.1
910,564	-				+0.0
910,564	-				-1.4
910,565	+				+0.1
910,565	+				+0.6
910,567	-				+0.2
910,568	+				-0.9
910,640	+				-0.4
910,668	-				-0.2
910,668	-				+0.6
910,668	-				+0.9
910,669	+				+0.1
910,669	+				-0.8
910,669	+				-0.5
910,670	-				+0.1
910,671	+				-1.3
910,671	+				+0.3
910,671	+				-2.9
910,676	+		MMJJ_RS04860	0.10	-0.1
910,690	-		MMJJ_RS04860	0.13	-1.4
910,721	+		MMJJ_RS04860	0.18	+0.3
910,722	-		MMJJ_RS04860	0.18	-0.8
910,723	+		MMJJ_RS04860	0.19	-0.5
910,723	+		MMJJ_RS04860	0.19	+0.6
910,753	-		MMJJ_RS04860	0.24	+0.3
910,754	+		MMJJ_RS04860	0.24	+0.1
910,783	-		MMJJ_RS04860	0.29	-0.3
910,793	-		MMJJ_RS04860	0.31	-0.5
910,793	-		MMJJ_RS04860	0.31	+0.6
910,794	+		MMJJ_RS04860	0.31	-0.5
910,808	+		MMJJ_RS04860	0.34	-0.7
910,824	-		MMJJ_RS04860	0.37	-0.1
910,824	-		MMJJ_RS04860	0.37	+0.4
910,825	+		MMJJ_RS04860	0.37	-0.3
910,825	+		MMJJ_RS04860	0.37	-0.2
910,825	+		MMJJ_RS04860	0.37	-0.0
910,825	+		MMJJ_RS04860	0.37	+0.2
910,871	-		MMJJ_RS04860	0.45	+0.2
910,872	+		MMJJ_RS04860	0.45	-0.8
910,887	+		MMJJ_RS04860	0.48	+0.4
910,901	+		MMJJ_RS04860	0.50	+1.0
910,922	-		MMJJ_RS04860	0.54	+1.5
910,922	-		MMJJ_RS04860	0.54	-1.6
910,922	-		MMJJ_RS04860	0.54	+0.2
910,922	-		MMJJ_RS04860	0.54	-0.7
910,922	-		MMJJ_RS04860	0.54	-0.7
910,923	+		MMJJ_RS04860	0.54	+0.2
910,923	+		MMJJ_RS04860	0.54	-0.6
910,924	-		MMJJ_RS04860	0.54	+0.1
910,924	-		MMJJ_RS04860	0.54	+0.6
910,924	-		MMJJ_RS04860	0.54	-0.1
910,934	+		MMJJ_RS04860	0.56	+0.4
910,934	+		MMJJ_RS04860	0.56	+0.6
910,952	-		MMJJ_RS04860	0.59	+0.1
910,952	-		MMJJ_RS04860	0.59	-0.6
910,953	+		MMJJ_RS04860	0.60	+0.4
910,953	+		MMJJ_RS04860	0.60	-0.5
910,983	+		MMJJ_RS04860	0.65	-0.3
910,983	+		MMJJ_RS04860	0.65	+2.0
910,983	+		MMJJ_RS04860	0.65	+0.7
911,011	-		MMJJ_RS04860	0.70	-1.0
911,012	+		MMJJ_RS04860	0.70	-0.5
911,012	+		MMJJ_RS04860	0.70	-0.4
911,012	+		MMJJ_RS04860	0.70	+0.7
911,012	+		MMJJ_RS04860	0.70	-0.2
911,018	-		MMJJ_RS04860	0.71	+0.1
911,019	+		MMJJ_RS04860	0.71	-0.1
911,056	-		MMJJ_RS04860	0.78	+1.2
911,057	+		MMJJ_RS04860	0.78	-0.5
911,057	+		MMJJ_RS04860	0.78	-0.6
911,060	-		MMJJ_RS04860	0.79	+0.4
911,071	-		MMJJ_RS04860	0.81	+0.4
911,071	-		MMJJ_RS04860	0.81	-0.5
911,075	+		MMJJ_RS04860	0.81	-0.0
911,082	-		MMJJ_RS04860	0.83	-0.9
911,093	-		MMJJ_RS04860	0.84	-0.1
911,097	-		MMJJ_RS04860	0.85	-0.2
911,097	-		MMJJ_RS04860	0.85	-0.1
911,097	-		MMJJ_RS04860	0.85	+0.8
911,097	-		MMJJ_RS04860	0.85	+0.1
911,097	-		MMJJ_RS04860	0.85	-0.5
911,097	-		MMJJ_RS04860	0.85	-0.6
911,097	-		MMJJ_RS04860	0.85	+0.3
911,098	+		MMJJ_RS04860	0.85	-0.9
911,098	+		MMJJ_RS04860	0.85	-0.2
911,098	+		MMJJ_RS04860	0.85	+0.5
911,098	+		MMJJ_RS04860	0.85	-0.7
911,099	-		MMJJ_RS04860	0.86	+0.7
911,099	-		MMJJ_RS04860	0.86	-0.4
911,099	-		MMJJ_RS04860	0.86	-1.0
911,100	+		MMJJ_RS04860	0.86	+0.5
911,100	+		MMJJ_RS04860	0.86	-0.4
911,109	+		MMJJ_RS04860	0.87	+0.4
911,109	+		MMJJ_RS04860	0.87	+0.3
911,112	-		MMJJ_RS04860	0.88	-0.1
911,112	-		MMJJ_RS04860	0.88	+0.2
911,112	-		MMJJ_RS04860	0.88	-1.3
911,113	+		MMJJ_RS04860	0.88	-0.4
911,117	+		MMJJ_RS04860	0.89	-0.5
911,117	+		MMJJ_RS04860	0.89	-0.1
911,117	+		MMJJ_RS04860	0.89	+0.7
911,130	+				-0.1
911,147	-				+0.2
911,150	-				-0.9
911,172	-				-0.0
911,223	-				-2.3
911,224	+				+0.2
911,224	+				+0.3
911,226	-				-0.8
911,226	-				-0.3
911,227	+				+0.5
911,228	-				+0.3
911,228	-				+0.0
911,229	+				+0.2
911,230	-				+0.2
911,230	-				-0.7
911,230	-				+1.0
911,231	+				+0.7
911,231	+				+0.8
911,231	+				+0.2
911,231	+				+0.5
911,267	+				-0.5
911,288	+				-1.7
911,288	+				-0.5
911,288	+				-1.5
911,313	-				-2.9
911,329	-				-0.8
911,330	+				-1.8
911,330	+				-0.6
911,371	-		MMJJ_RS04865	0.17	-0.7
911,404	+		MMJJ_RS04865	0.22	-1.5
911,404	+		MMJJ_RS04865	0.22	-1.8
911,404	+		MMJJ_RS04865	0.22	-2.5
911,404	+		MMJJ_RS04865	0.22	-1.2
911,410	-		MMJJ_RS04865	0.23	-1.2
911,410	-		MMJJ_RS04865	0.23	-1.6
911,410	-		MMJJ_RS04865	0.23	-2.1
911,415	-		MMJJ_RS04865	0.24	-1.4
911,490	-		MMJJ_RS04865	0.36	-2.4
911,496	-		MMJJ_RS04865	0.37	-0.7
911,527	-		MMJJ_RS04865	0.42	-2.3
911,528	+		MMJJ_RS04865	0.42	-1.1
911,569	-		MMJJ_RS04865	0.49	-1.0
911,578	-		MMJJ_RS04865	0.50	-1.5
911,578	-		MMJJ_RS04865	0.50	-3.5
911,579	+		MMJJ_RS04865	0.50	-3.3
911,579	+		MMJJ_RS04865	0.50	-2.2
911,579	+		MMJJ_RS04865	0.50	-2.2
911,647	-		MMJJ_RS04865	0.61	-1.2
911,647	-		MMJJ_RS04865	0.61	+0.1
911,648	+		MMJJ_RS04865	0.61	-1.2
911,648	+		MMJJ_RS04865	0.61	-1.2
911,648	+		MMJJ_RS04865	0.61	+0.8
911,680	-		MMJJ_RS04865	0.67	-1.3
911,680	-		MMJJ_RS04865	0.67	-1.6
911,681	+		MMJJ_RS04865	0.67	-1.3
911,681	+		MMJJ_RS04865	0.67	-1.8
911,682	-		MMJJ_RS04865	0.67	-0.6
911,683	+		MMJJ_RS04865	0.67	-1.6
911,722	-		MMJJ_RS04865	0.73	-2.4
911,722	-		MMJJ_RS04865	0.73	-0.7
911,722	-		MMJJ_RS04865	0.73	-0.9
911,722	-		MMJJ_RS04865	0.73	-0.7
911,722	-		MMJJ_RS04865	0.73	+0.3
911,722	-		MMJJ_RS04865	0.73	-1.2
911,722	-		MMJJ_RS04865	0.73	-1.1
911,723	+		MMJJ_RS04865	0.73	-2.5
911,723	+		MMJJ_RS04865	0.73	-1.8
911,723	+		MMJJ_RS04865	0.73	-1.2
911,746	-		MMJJ_RS04865	0.77	-2.1
911,747	+		MMJJ_RS04865	0.77	-1.3
911,747	+		MMJJ_RS04865	0.77	-2.5
911,747	+		MMJJ_RS04865	0.77	-1.3
911,801	-		MMJJ_RS04865	0.86	-0.7
911,802	+		MMJJ_RS04865	0.86	-1.1
911,826	-				-1.7
911,925	-				-0.3
911,925	-				-0.0
911,926	+				+0.5
911,986	+				+1.3
912,001	+		MMJJ_RS04870	0.83	-0.8
912,001	+		MMJJ_RS04870	0.83	+0.9
912,095	+		MMJJ_RS04875	0.82	-1.8
912,100	+				-0.2
912,100	+				-1.2
912,121	-				-1.5
912,136	-				-0.9
912,834	-				-0.4
912,848	-				-1.7
912,849	+				-0.3
912,849	+				-0.1
912,855	-				-0.6
912,856	+				+0.2
912,863	-				+0.6
912,864	+				+0.8
912,864	+				-0.6
912,864	+				+1.3
912,866	-				-0.5
912,868	-				-0.9
912,868	-				-0.4
912,869	+				-0.3
912,886	-				-1.2