Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04675

Experiment: formate N-free with 10mM Ammonium chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04670 and MMJJ_RS04675 are separated by 18 nucleotidesMMJJ_RS04675 and MMJJ_RS04680 are separated by 29 nucleotidesMMJJ_RS04680 and MMJJ_RS04685 are separated by 44 nucleotides MMJJ_RS04670: MMJJ_RS04670 - DUF2117 domain-containing protein, at 871,440 to 872,555 _RS04670 MMJJ_RS04675: MMJJ_RS04675 - thiamine pyrophosphate-binding protein, at 872,574 to 874,079 _RS04675 MMJJ_RS04680: MMJJ_RS04680 - topoisomerase DNA-binding C4 zinc finger domain-containing protein, at 874,109 to 874,981 _RS04680 MMJJ_RS04685: MMJJ_RS04685 - carbamoyltransferase HypF, at 875,026 to 877,341 _RS04685 Position (kb) 872 873 874 875Strain fitness (log2 ratio) -3 -2 -1 0 1at 871.579 kb on - strand, within MMJJ_RS04670at 871.580 kb on + strand, within MMJJ_RS04670at 871.811 kb on - strand, within MMJJ_RS04670at 871.923 kb on + strand, within MMJJ_RS04670at 871.923 kb on + strand, within MMJJ_RS04670at 871.923 kb on + strand, within MMJJ_RS04670at 871.982 kb on - strand, within MMJJ_RS04670at 872.037 kb on + strand, within MMJJ_RS04670at 872.254 kb on - strand, within MMJJ_RS04670at 872.255 kb on + strand, within MMJJ_RS04670at 872.379 kb on + strand, within MMJJ_RS04670at 872.379 kb on + strand, within MMJJ_RS04670at 872.440 kb on - strand, within MMJJ_RS04670at 872.526 kb on - strandat 872.545 kb on - strandat 872.559 kb on - strandat 872.591 kb on - strandat 872.883 kb on - strand, within MMJJ_RS04675at 872.884 kb on + strand, within MMJJ_RS04675at 872.884 kb on + strand, within MMJJ_RS04675at 872.885 kb on - strand, within MMJJ_RS04675at 872.898 kb on - strand, within MMJJ_RS04675at 872.944 kb on + strand, within MMJJ_RS04675at 872.985 kb on - strand, within MMJJ_RS04675at 872.985 kb on - strandat 872.988 kb on + strand, within MMJJ_RS04675at 873.047 kb on - strand, within MMJJ_RS04675at 873.248 kb on - strand, within MMJJ_RS04675at 873.322 kb on - strand, within MMJJ_RS04675at 873.384 kb on - strand, within MMJJ_RS04675at 873.390 kb on + strand, within MMJJ_RS04675at 873.414 kb on + strand, within MMJJ_RS04675at 873.422 kb on + strand, within MMJJ_RS04675at 873.426 kb on + strand, within MMJJ_RS04675at 873.430 kb on - strand, within MMJJ_RS04675at 873.440 kb on - strand, within MMJJ_RS04675at 873.456 kb on + strand, within MMJJ_RS04675at 873.471 kb on + strand, within MMJJ_RS04675at 873.481 kb on - strand, within MMJJ_RS04675at 873.482 kb on + strand, within MMJJ_RS04675at 873.771 kb on + strand, within MMJJ_RS04675at 873.863 kb on + strand, within MMJJ_RS04675at 873.866 kb on - strand, within MMJJ_RS04675at 874.002 kb on - strandat 874.057 kb on - strandat 874.090 kb on - strandat 874.091 kb on + strandat 874.231 kb on - strand, within MMJJ_RS04680at 874.232 kb on + strand, within MMJJ_RS04680at 874.329 kb on + strand, within MMJJ_RS04680at 874.332 kb on - strand, within MMJJ_RS04680at 874.333 kb on + strand, within MMJJ_RS04680at 874.366 kb on - strand, within MMJJ_RS04680at 874.366 kb on - strand, within MMJJ_RS04680at 874.367 kb on + strand, within MMJJ_RS04680at 874.388 kb on - strand, within MMJJ_RS04680at 874.420 kb on + strand, within MMJJ_RS04680at 874.468 kb on - strand, within MMJJ_RS04680at 874.469 kb on + strand, within MMJJ_RS04680at 874.498 kb on - strand, within MMJJ_RS04680at 874.499 kb on + strand, within MMJJ_RS04680at 874.504 kb on - strand, within MMJJ_RS04680at 874.505 kb on + strand, within MMJJ_RS04680at 874.505 kb on + strand, within MMJJ_RS04680at 874.519 kb on + strand, within MMJJ_RS04680at 874.572 kb on + strand, within MMJJ_RS04680at 874.589 kb on - strand, within MMJJ_RS04680at 874.590 kb on + strand, within MMJJ_RS04680at 874.624 kb on - strand, within MMJJ_RS04680at 874.690 kb on - strand, within MMJJ_RS04680at 874.690 kb on - strand, within MMJJ_RS04680at 874.720 kb on + strand, within MMJJ_RS04680at 874.758 kb on + strand, within MMJJ_RS04680at 874.758 kb on + strand, within MMJJ_RS04680at 874.762 kb on - strand, within MMJJ_RS04680at 874.763 kb on + strand, within MMJJ_RS04680at 874.766 kb on - strand, within MMJJ_RS04680at 874.766 kb on - strandat 874.767 kb on + strand, within MMJJ_RS04680at 874.767 kb on + strand, within MMJJ_RS04680at 874.767 kb on + strand, within MMJJ_RS04680at 874.779 kb on - strand, within MMJJ_RS04680at 874.793 kb on + strand, within MMJJ_RS04680at 874.796 kb on - strand, within MMJJ_RS04680at 874.797 kb on + strand, within MMJJ_RS04680at 874.797 kb on + strand, within MMJJ_RS04680at 874.816 kb on - strand, within MMJJ_RS04680at 874.827 kb on + strand, within MMJJ_RS04680at 874.867 kb on - strand, within MMJJ_RS04680at 874.893 kb on - strand, within MMJJ_RS04680at 874.900 kb on - strandat 874.956 kb on + strandat 874.985 kb on + strandat 874.985 kb on + strandat 874.997 kb on - strandat 875.001 kb on - strandat 875.002 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction formate N-free with 10mM Ammonium chloride
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871,579 - MMJJ_RS04670 0.12 -1.9
871,580 + MMJJ_RS04670 0.13 -2.0
871,811 - MMJJ_RS04670 0.33 -1.1
871,923 + MMJJ_RS04670 0.43 -0.7
871,923 + MMJJ_RS04670 0.43 -0.4
871,923 + MMJJ_RS04670 0.43 -2.5
871,982 - MMJJ_RS04670 0.49 -0.8
872,037 + MMJJ_RS04670 0.53 -1.2
872,254 - MMJJ_RS04670 0.73 -1.0
872,255 + MMJJ_RS04670 0.73 -1.7
872,379 + MMJJ_RS04670 0.84 -1.9
872,379 + MMJJ_RS04670 0.84 -1.0
872,440 - MMJJ_RS04670 0.90 -2.0
872,526 - -0.7
872,545 - +0.9
872,559 - -1.5
872,591 - -2.2
872,883 - MMJJ_RS04675 0.21 -2.9
872,884 + MMJJ_RS04675 0.21 -1.6
872,884 + MMJJ_RS04675 0.21 +0.2
872,885 - MMJJ_RS04675 0.21 -2.3
872,898 - MMJJ_RS04675 0.22 -2.3
872,944 + MMJJ_RS04675 0.25 -1.9
872,985 - MMJJ_RS04675 0.27 -0.9
872,985 - -1.7
872,988 + MMJJ_RS04675 0.27 -0.3
873,047 - MMJJ_RS04675 0.31 +0.2
873,248 - MMJJ_RS04675 0.45 -2.0
873,322 - MMJJ_RS04675 0.50 -1.5
873,384 - MMJJ_RS04675 0.54 -2.9
873,390 + MMJJ_RS04675 0.54 -2.0
873,414 + MMJJ_RS04675 0.56 -2.5
873,422 + MMJJ_RS04675 0.56 -3.2
873,426 + MMJJ_RS04675 0.57 -2.7
873,430 - MMJJ_RS04675 0.57 -0.6
873,440 - MMJJ_RS04675 0.58 -1.7
873,456 + MMJJ_RS04675 0.59 -0.7
873,471 + MMJJ_RS04675 0.60 -2.7
873,481 - MMJJ_RS04675 0.60 -1.0
873,482 + MMJJ_RS04675 0.60 -2.9
873,771 + MMJJ_RS04675 0.79 -2.0
873,863 + MMJJ_RS04675 0.86 -2.2
873,866 - MMJJ_RS04675 0.86 -2.2
874,002 - +0.8
874,057 - -0.4
874,090 - -1.2
874,091 + +0.1
874,231 - MMJJ_RS04680 0.14 -1.2
874,232 + MMJJ_RS04680 0.14 -0.7
874,329 + MMJJ_RS04680 0.25 -1.2
874,332 - MMJJ_RS04680 0.26 -0.5
874,333 + MMJJ_RS04680 0.26 +0.7
874,366 - MMJJ_RS04680 0.29 -0.7
874,366 - MMJJ_RS04680 0.29 -1.2
874,367 + MMJJ_RS04680 0.30 -0.5
874,388 - MMJJ_RS04680 0.32 -0.4
874,420 + MMJJ_RS04680 0.36 -1.2
874,468 - MMJJ_RS04680 0.41 -0.9
874,469 + MMJJ_RS04680 0.41 -0.0
874,498 - MMJJ_RS04680 0.45 +0.1
874,499 + MMJJ_RS04680 0.45 -1.0
874,504 - MMJJ_RS04680 0.45 -1.9
874,505 + MMJJ_RS04680 0.45 -0.4
874,505 + MMJJ_RS04680 0.45 -1.1
874,519 + MMJJ_RS04680 0.47 -1.0
874,572 + MMJJ_RS04680 0.53 -1.6
874,589 - MMJJ_RS04680 0.55 -1.3
874,590 + MMJJ_RS04680 0.55 +0.7
874,624 - MMJJ_RS04680 0.59 -0.8
874,690 - MMJJ_RS04680 0.67 -1.8
874,690 - MMJJ_RS04680 0.67 -0.3
874,720 + MMJJ_RS04680 0.70 -0.4
874,758 + MMJJ_RS04680 0.74 -1.7
874,758 + MMJJ_RS04680 0.74 -0.5
874,762 - MMJJ_RS04680 0.75 -0.0
874,763 + MMJJ_RS04680 0.75 -0.3
874,766 - MMJJ_RS04680 0.75 -2.0
874,766 - +1.3
874,767 + MMJJ_RS04680 0.75 -0.3
874,767 + MMJJ_RS04680 0.75 -0.7
874,767 + MMJJ_RS04680 0.75 -1.2
874,779 - MMJJ_RS04680 0.77 -0.2
874,793 + MMJJ_RS04680 0.78 -1.5
874,796 - MMJJ_RS04680 0.79 -1.0
874,797 + MMJJ_RS04680 0.79 +0.4
874,797 + MMJJ_RS04680 0.79 -0.9
874,816 - MMJJ_RS04680 0.81 -1.2
874,827 + MMJJ_RS04680 0.82 -0.9
874,867 - MMJJ_RS04680 0.87 +0.5
874,893 - MMJJ_RS04680 0.90 -0.3
874,900 - +1.4
874,956 + -2.2
874,985 + -1.2
874,985 + -0.1
874,997 - +0.5
875,001 - -0.3
875,002 + -2.2

Or see this region's nucleotide sequence