Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04500

Experiment: formate N-free with 10mM Ammonium chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04490 and MMJJ_RS04495 are separated by 9 nucleotidesMMJJ_RS04495 and MMJJ_RS04500 are separated by 135 nucleotidesMMJJ_RS04500 and MMJJ_RS04505 are separated by 112 nucleotides MMJJ_RS04490: MMJJ_RS04490 - AIR synthase-related protein, at 835,155 to 838,124 _RS04490 MMJJ_RS04495: MMJJ_RS04495 - phosphoribosylformylglycinamidine synthase I, at 838,134 to 838,943 _RS04495 MMJJ_RS04500: MMJJ_RS04500 - hypothetical protein, at 839,079 to 839,438 _RS04500 MMJJ_RS04505: MMJJ_RS04505 - CDC48 family AAA ATPase, at 839,551 to 841,917 _RS04505 Position (kb) 839 840Strain fitness (log2 ratio) -3 -2 -1 0 1at 838.106 kb on - strandat 838.502 kb on - strandat 838.506 kb on + strand, within MMJJ_RS04495at 838.585 kb on - strand, within MMJJ_RS04495at 838.780 kb on - strand, within MMJJ_RS04495at 838.996 kb on - strandat 838.996 kb on - strandat 839.028 kb on + strandat 839.033 kb on - strandat 839.034 kb on + strandat 839.034 kb on + strandat 839.048 kb on + strandat 839.053 kb on + strandat 839.058 kb on - strandat 839.064 kb on - strandat 839.064 kb on - strandat 839.065 kb on + strandat 839.095 kb on - strandat 839.183 kb on - strand, within MMJJ_RS04500at 839.196 kb on + strand, within MMJJ_RS04500at 839.202 kb on - strand, within MMJJ_RS04500at 839.203 kb on + strand, within MMJJ_RS04500at 839.205 kb on - strand, within MMJJ_RS04500at 839.205 kb on - strand, within MMJJ_RS04500at 839.205 kb on - strand, within MMJJ_RS04500at 839.205 kb on - strand, within MMJJ_RS04500at 839.205 kb on - strand, within MMJJ_RS04500at 839.205 kb on - strand, within MMJJ_RS04500at 839.205 kb on - strand, within MMJJ_RS04500at 839.206 kb on + strand, within MMJJ_RS04500at 839.206 kb on + strand, within MMJJ_RS04500at 839.206 kb on + strand, within MMJJ_RS04500at 839.206 kb on + strand, within MMJJ_RS04500at 839.213 kb on + strand, within MMJJ_RS04500at 839.213 kb on - strandat 839.246 kb on + strand, within MMJJ_RS04500at 839.257 kb on - strand, within MMJJ_RS04500at 839.258 kb on + strand, within MMJJ_RS04500at 839.274 kb on - strand, within MMJJ_RS04500at 839.288 kb on + strand, within MMJJ_RS04500at 839.341 kb on - strand, within MMJJ_RS04500at 839.364 kb on - strand, within MMJJ_RS04500at 839.364 kb on - strand, within MMJJ_RS04500at 839.364 kb on - strand, within MMJJ_RS04500at 839.364 kb on - strand, within MMJJ_RS04500at 839.364 kb on - strand, within MMJJ_RS04500at 839.364 kb on - strand, within MMJJ_RS04500at 839.364 kb on - strand, within MMJJ_RS04500at 839.364 kb on - strand, within MMJJ_RS04500at 839.364 kb on - strand, within MMJJ_RS04500at 839.364 kb on - strand, within MMJJ_RS04500at 839.365 kb on + strand, within MMJJ_RS04500at 839.365 kb on + strand, within MMJJ_RS04500at 839.365 kb on + strand, within MMJJ_RS04500at 839.365 kb on + strand, within MMJJ_RS04500at 839.436 kb on - strandat 839.437 kb on + strandat 839.441 kb on + strandat 839.441 kb on + strandat 839.442 kb on - strandat 839.442 kb on - strandat 839.443 kb on + strandat 839.446 kb on - strandat 839.446 kb on - strandat 839.446 kb on - strandat 839.454 kb on + strandat 839.522 kb on - strandat 839.530 kb on - strandat 839.532 kb on - strandat 839.592 kb on + strandat 839.766 kb on - strandat 839.790 kb on + strand, within MMJJ_RS04505at 840.007 kb on - strand, within MMJJ_RS04505at 840.008 kb on + strand, within MMJJ_RS04505at 840.010 kb on + strand, within MMJJ_RS04505at 840.096 kb on + strand, within MMJJ_RS04505at 840.146 kb on + strand, within MMJJ_RS04505at 840.155 kb on - strand, within MMJJ_RS04505at 840.155 kb on - strand, within MMJJ_RS04505at 840.191 kb on - strand, within MMJJ_RS04505

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Per-strain Table

Position Strand Gene LocusTag Fraction formate N-free with 10mM Ammonium chloride
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838,106 - -1.7
838,502 - -1.2
838,506 + MMJJ_RS04495 0.46 -3.1
838,585 - MMJJ_RS04495 0.56 -1.5
838,780 - MMJJ_RS04495 0.80 -1.9
838,996 - -0.7
838,996 - +0.2
839,028 + -0.2
839,033 - +0.4
839,034 + +0.3
839,034 + -0.5
839,048 + +0.8
839,053 + -0.1
839,058 - +0.3
839,064 - +0.1
839,064 - +1.0
839,065 + -0.3
839,095 - +0.7
839,183 - MMJJ_RS04500 0.29 -0.6
839,196 + MMJJ_RS04500 0.33 +1.1
839,202 - MMJJ_RS04500 0.34 -0.2
839,203 + MMJJ_RS04500 0.34 +1.1
839,205 - MMJJ_RS04500 0.35 -0.4
839,205 - MMJJ_RS04500 0.35 +0.2
839,205 - MMJJ_RS04500 0.35 +0.3
839,205 - MMJJ_RS04500 0.35 +0.3
839,205 - MMJJ_RS04500 0.35 +0.8
839,205 - MMJJ_RS04500 0.35 +0.9
839,205 - MMJJ_RS04500 0.35 +0.7
839,206 + MMJJ_RS04500 0.35 +0.2
839,206 + MMJJ_RS04500 0.35 +0.0
839,206 + MMJJ_RS04500 0.35 +0.2
839,206 + MMJJ_RS04500 0.35 -0.3
839,213 + MMJJ_RS04500 0.37 +0.2
839,213 - +1.3
839,246 + MMJJ_RS04500 0.46 +0.8
839,257 - MMJJ_RS04500 0.49 +0.2
839,258 + MMJJ_RS04500 0.50 -1.2
839,274 - MMJJ_RS04500 0.54 +0.6
839,288 + MMJJ_RS04500 0.58 +0.8
839,341 - MMJJ_RS04500 0.73 -2.1
839,364 - MMJJ_RS04500 0.79 -0.5
839,364 - MMJJ_RS04500 0.79 +0.3
839,364 - MMJJ_RS04500 0.79 -0.1
839,364 - MMJJ_RS04500 0.79 +0.8
839,364 - MMJJ_RS04500 0.79 +0.1
839,364 - MMJJ_RS04500 0.79 +0.1
839,364 - MMJJ_RS04500 0.79 -0.0
839,364 - MMJJ_RS04500 0.79 +0.1
839,364 - MMJJ_RS04500 0.79 -0.7
839,364 - MMJJ_RS04500 0.79 +1.1
839,365 + MMJJ_RS04500 0.79 -0.7
839,365 + MMJJ_RS04500 0.79 +0.3
839,365 + MMJJ_RS04500 0.79 -0.8
839,365 + MMJJ_RS04500 0.79 +0.4
839,436 - -1.0
839,437 + +0.3
839,441 + +1.2
839,441 + +0.4
839,442 - -1.4
839,442 - -0.4
839,443 + -1.1
839,446 - +0.1
839,446 - +1.3
839,446 - -0.3
839,454 + +0.3
839,522 - -0.7
839,530 - -0.8
839,532 - -1.8
839,592 + -0.4
839,766 - +0.2
839,790 + MMJJ_RS04505 0.10 -1.5
840,007 - MMJJ_RS04505 0.19 -3.0
840,008 + MMJJ_RS04505 0.19 -0.6
840,010 + MMJJ_RS04505 0.19 -1.2
840,096 + MMJJ_RS04505 0.23 -2.5
840,146 + MMJJ_RS04505 0.25 -1.5
840,155 - MMJJ_RS04505 0.26 -2.5
840,155 - MMJJ_RS04505 0.26 -0.5
840,191 - MMJJ_RS04505 0.27 +0.4

Or see this region's nucleotide sequence