Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04345

Experiment: formate N-free with 10mM Ammonium chloride

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS04335 and MMJJ_RS04340 are separated by 12 nucleotidesMMJJ_RS04340 and MMJJ_RS04345 are separated by 1 nucleotidesMMJJ_RS04345 and MMJJ_RS04350 overlap by 8 nucleotidesMMJJ_RS04350 and MMJJ_RS09405 are separated by 18 nucleotidesMMJJ_RS09405 and MMJJ_RS04360 are separated by 206 nucleotides MMJJ_RS04335: MMJJ_RS04335 - minichromosome maintenance protein MCM, at 809,188 to 811,212 _RS04335 MMJJ_RS04340: MMJJ_RS04340 - hypothetical protein, at 811,225 to 811,440 _RS04340 MMJJ_RS04345: MMJJ_RS04345 - DUF2080 family transposase-associated protein, at 811,442 to 811,666 _RS04345 MMJJ_RS04350: MMJJ_RS04350 - hypothetical protein, at 811,659 to 812,162 _RS04350 MMJJ_RS09405: MMJJ_RS09405 - hypothetical protein, at 812,181 to 812,360 _RS09405 MMJJ_RS04360: MMJJ_RS04360 - winged helix-turn-helix transcriptional regulator, at 812,567 to 812,869 _RS04360 Position (kb) 811 812Strain fitness (log2 ratio) -2 -1 0 1 2at 810.457 kb on - strand, within MMJJ_RS04335at 810.457 kb on - strand, within MMJJ_RS04335at 810.457 kb on - strand, within MMJJ_RS04335at 810.458 kb on + strand, within MMJJ_RS04335at 810.604 kb on - strand, within MMJJ_RS04335at 810.604 kb on - strand, within MMJJ_RS04335at 810.682 kb on - strand, within MMJJ_RS04335at 810.682 kb on - strand, within MMJJ_RS04335at 810.682 kb on - strand, within MMJJ_RS04335at 810.682 kb on - strand, within MMJJ_RS04335at 810.683 kb on + strand, within MMJJ_RS04335at 810.683 kb on + strand, within MMJJ_RS04335at 810.683 kb on + strand, within MMJJ_RS04335at 810.683 kb on + strand, within MMJJ_RS04335at 810.686 kb on - strand, within MMJJ_RS04335at 810.686 kb on - strand, within MMJJ_RS04335at 810.687 kb on + strand, within MMJJ_RS04335at 810.714 kb on - strand, within MMJJ_RS04335at 810.715 kb on + strand, within MMJJ_RS04335at 810.810 kb on + strand, within MMJJ_RS04335at 810.810 kb on + strand, within MMJJ_RS04335at 810.856 kb on - strand, within MMJJ_RS04335at 810.856 kb on - strand, within MMJJ_RS04335at 810.857 kb on + strand, within MMJJ_RS04335at 811.016 kb on - strandat 811.065 kb on + strandat 811.136 kb on + strandat 811.186 kb on - strandat 811.276 kb on + strand, within MMJJ_RS04340at 811.300 kb on - strand, within MMJJ_RS04340at 811.300 kb on - strand, within MMJJ_RS04340at 811.301 kb on + strand, within MMJJ_RS04340at 811.321 kb on + strand, within MMJJ_RS04340at 811.333 kb on + strand, within MMJJ_RS04340at 811.407 kb on - strand, within MMJJ_RS04340at 811.571 kb on - strand, within MMJJ_RS04345at 811.582 kb on - strand, within MMJJ_RS04345at 811.582 kb on - strand, within MMJJ_RS04345at 811.583 kb on + strand, within MMJJ_RS04345at 811.583 kb on + strand, within MMJJ_RS04345at 811.635 kb on + strand, within MMJJ_RS04345at 811.655 kb on - strandat 811.656 kb on + strandat 811.788 kb on - strand, within MMJJ_RS04350at 811.789 kb on + strand, within MMJJ_RS04350at 811.789 kb on + strand, within MMJJ_RS04350at 811.932 kb on + strand, within MMJJ_RS04350at 811.932 kb on + strand, within MMJJ_RS04350at 811.965 kb on - strand, within MMJJ_RS04350at 811.966 kb on + strand, within MMJJ_RS04350at 811.966 kb on + strand, within MMJJ_RS04350at 812.059 kb on - strand, within MMJJ_RS04350at 812.076 kb on - strand, within MMJJ_RS04350at 812.076 kb on - strand, within MMJJ_RS04350at 812.089 kb on + strand, within MMJJ_RS04350at 812.124 kb on + strandat 812.127 kb on - strandat 812.127 kb on - strandat 812.128 kb on + strandat 812.163 kb on + strandat 812.180 kb on + strandat 812.183 kb on + strandat 812.203 kb on + strand, within MMJJ_RS09405at 812.221 kb on + strand, within MMJJ_RS09405at 812.279 kb on - strand, within MMJJ_RS09405at 812.280 kb on + strand, within MMJJ_RS09405at 812.313 kb on - strand, within MMJJ_RS09405at 812.314 kb on + strand, within MMJJ_RS09405at 812.314 kb on + strand, within MMJJ_RS09405at 812.354 kb on + strandat 812.446 kb on + strandat 812.450 kb on - strandat 812.450 kb on - strandat 812.451 kb on + strandat 812.451 kb on + strandat 812.451 kb on + strandat 812.455 kb on + strandat 812.455 kb on + strandat 812.459 kb on - strandat 812.459 kb on - strandat 812.460 kb on + strandat 812.514 kb on - strandat 812.519 kb on + strandat 812.519 kb on + strandat 812.523 kb on + strandat 812.549 kb on - strandat 812.563 kb on - strandat 812.563 kb on - strandat 812.567 kb on + strandat 812.567 kb on + strandat 812.567 kb on + strandat 812.637 kb on - strand, within MMJJ_RS04360at 812.657 kb on + strand, within MMJJ_RS04360at 812.660 kb on - strand, within MMJJ_RS04360at 812.660 kb on - strand, within MMJJ_RS04360

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction formate N-free with 10mM Ammonium chloride
remove
810,457 - MMJJ_RS04335 0.63 -0.1
810,457 - MMJJ_RS04335 0.63 -0.3
810,457 - MMJJ_RS04335 0.63 -0.1
810,458 + MMJJ_RS04335 0.63 +0.4
810,604 - MMJJ_RS04335 0.70 +0.6
810,604 - MMJJ_RS04335 0.70 -0.7
810,682 - MMJJ_RS04335 0.74 -0.6
810,682 - MMJJ_RS04335 0.74 -0.9
810,682 - MMJJ_RS04335 0.74 +0.2
810,682 - MMJJ_RS04335 0.74 -0.6
810,683 + MMJJ_RS04335 0.74 -2.2
810,683 + MMJJ_RS04335 0.74 +0.4
810,683 + MMJJ_RS04335 0.74 +1.0
810,683 + MMJJ_RS04335 0.74 -1.3
810,686 - MMJJ_RS04335 0.74 -1.0
810,686 - MMJJ_RS04335 0.74 -1.0
810,687 + MMJJ_RS04335 0.74 -0.0
810,714 - MMJJ_RS04335 0.75 +0.3
810,715 + MMJJ_RS04335 0.75 -0.2
810,810 + MMJJ_RS04335 0.80 +0.7
810,810 + MMJJ_RS04335 0.80 -0.4
810,856 - MMJJ_RS04335 0.82 -0.4
810,856 - MMJJ_RS04335 0.82 +1.5
810,857 + MMJJ_RS04335 0.82 -0.1
811,016 - +0.2
811,065 + +0.3
811,136 + +0.2
811,186 - -0.5
811,276 + MMJJ_RS04340 0.24 +0.1
811,300 - MMJJ_RS04340 0.35 -0.5
811,300 - MMJJ_RS04340 0.35 +0.3
811,301 + MMJJ_RS04340 0.35 -0.5
811,321 + MMJJ_RS04340 0.44 +1.8
811,333 + MMJJ_RS04340 0.50 +0.2
811,407 - MMJJ_RS04340 0.84 -0.4
811,571 - MMJJ_RS04345 0.57 +0.1
811,582 - MMJJ_RS04345 0.62 -0.4
811,582 - MMJJ_RS04345 0.62 +0.6
811,583 + MMJJ_RS04345 0.63 +0.3
811,583 + MMJJ_RS04345 0.63 +1.1
811,635 + MMJJ_RS04345 0.86 +0.1
811,655 - +0.0
811,656 + -0.0
811,788 - MMJJ_RS04350 0.26 +0.8
811,789 + MMJJ_RS04350 0.26 -0.3
811,789 + MMJJ_RS04350 0.26 +0.7
811,932 + MMJJ_RS04350 0.54 -1.0
811,932 + MMJJ_RS04350 0.54 +0.1
811,965 - MMJJ_RS04350 0.61 +0.4
811,966 + MMJJ_RS04350 0.61 +0.7
811,966 + MMJJ_RS04350 0.61 -0.3
812,059 - MMJJ_RS04350 0.79 -0.1
812,076 - MMJJ_RS04350 0.83 +0.8
812,076 - MMJJ_RS04350 0.83 +1.2
812,089 + MMJJ_RS04350 0.85 +0.4
812,124 + +0.4
812,127 - -0.4
812,127 - -0.6
812,128 + +0.0
812,163 + -0.2
812,180 + +0.1
812,183 + -1.5
812,203 + MMJJ_RS09405 0.12 +1.4
812,221 + MMJJ_RS09405 0.22 -0.5
812,279 - MMJJ_RS09405 0.54 +0.1
812,280 + MMJJ_RS09405 0.55 -0.2
812,313 - MMJJ_RS09405 0.73 +0.3
812,314 + MMJJ_RS09405 0.74 -0.3
812,314 + MMJJ_RS09405 0.74 +0.5
812,354 + -0.7
812,446 + +0.7
812,450 - -0.2
812,450 - +0.6
812,451 + +0.5
812,451 + -0.8
812,451 + -0.4
812,455 + +0.4
812,455 + +0.1
812,459 - +0.3
812,459 - +0.5
812,460 + +0.6
812,514 - -0.1
812,519 + +0.6
812,519 + -1.4
812,523 + -0.9
812,549 - +0.9
812,563 - +1.4
812,563 - -0.2
812,567 + -0.3
812,567 + +0.0
812,567 + +0.7
812,637 - MMJJ_RS04360 0.23 +0.7
812,657 + MMJJ_RS04360 0.30 +0.6
812,660 - MMJJ_RS04360 0.31 +0.3
812,660 - MMJJ_RS04360 0.31 -0.2

Or see this region's nucleotide sequence