Experiment: formate N-free with 10mM Ammonium chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03830 and MMJJ_RS03835 are separated by 5 nucleotides MMJJ_RS03835 and MMJJ_RS03840 are separated by 9 nucleotides MMJJ_RS03840 and MMJJ_RS03845 are separated by 134 nucleotides
MMJJ_RS03830: MMJJ_RS03830 - CBS domain-containing protein, at 712,670 to 713,464
_RS03830
MMJJ_RS03835: MMJJ_RS03835 - DUF504 domain-containing protein, at 713,470 to 713,700
_RS03835
MMJJ_RS03840: MMJJ_RS03840 - DHH family phosphoesterase, at 713,710 to 715,170
_RS03840
MMJJ_RS03845: MMJJ_RS03845 - translation initiation factor IF-2, at 715,305 to 717,101
_RS03845
Position (kb) 713
714
715
716 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 712.741 kb on - strand at 712.745 kb on + strand at 712.811 kb on - strand, within MMJJ_RS03830 at 712.893 kb on - strand, within MMJJ_RS03830 at 712.919 kb on + strand, within MMJJ_RS03830 at 712.949 kb on - strand, within MMJJ_RS03830 at 712.950 kb on + strand, within MMJJ_RS03830 at 712.957 kb on + strand, within MMJJ_RS03830 at 713.006 kb on - strand, within MMJJ_RS03830 at 713.006 kb on - strand, within MMJJ_RS03830 at 713.007 kb on + strand, within MMJJ_RS03830 at 713.024 kb on + strand, within MMJJ_RS03830 at 713.038 kb on - strand, within MMJJ_RS03830 at 713.039 kb on + strand, within MMJJ_RS03830 at 713.039 kb on + strand, within MMJJ_RS03830 at 713.039 kb on + strand, within MMJJ_RS03830 at 713.043 kb on + strand, within MMJJ_RS03830 at 713.065 kb on + strand, within MMJJ_RS03830 at 713.124 kb on + strand, within MMJJ_RS03830 at 713.124 kb on + strand, within MMJJ_RS03830 at 713.124 kb on + strand, within MMJJ_RS03830 at 713.124 kb on + strand, within MMJJ_RS03830 at 713.124 kb on + strand, within MMJJ_RS03830 at 713.197 kb on - strand, within MMJJ_RS03830 at 713.198 kb on + strand, within MMJJ_RS03830 at 713.222 kb on - strand, within MMJJ_RS03830 at 713.242 kb on - strand, within MMJJ_RS03830 at 713.280 kb on + strand, within MMJJ_RS03830 at 713.299 kb on - strand, within MMJJ_RS03830 at 713.306 kb on + strand, within MMJJ_RS03830 at 713.391 kb on + strand at 713.446 kb on + strand at 713.459 kb on - strand at 713.460 kb on + strand at 713.506 kb on + strand, within MMJJ_RS03835 at 713.580 kb on - strand, within MMJJ_RS03835 at 713.630 kb on - strand, within MMJJ_RS03835 at 713.631 kb on + strand, within MMJJ_RS03835 at 713.640 kb on - strand, within MMJJ_RS03835 at 713.643 kb on + strand, within MMJJ_RS03835 at 713.643 kb on + strand, within MMJJ_RS03835 at 713.656 kb on + strand, within MMJJ_RS03835 at 713.686 kb on + strand at 713.686 kb on + strand at 713.701 kb on - strand at 713.701 kb on - strand at 713.701 kb on - strand at 713.702 kb on + strand at 713.711 kb on - strand at 713.966 kb on - strand, within MMJJ_RS03840 at 714.027 kb on - strand, within MMJJ_RS03840 at 714.248 kb on - strand, within MMJJ_RS03840 at 714.517 kb on - strand, within MMJJ_RS03840 at 714.517 kb on - strand, within MMJJ_RS03840 at 714.545 kb on - strand, within MMJJ_RS03840 at 714.546 kb on + strand, within MMJJ_RS03840 at 714.658 kb on - strand, within MMJJ_RS03840 at 714.662 kb on + strand, within MMJJ_RS03840 at 714.710 kb on - strand, within MMJJ_RS03840 at 714.832 kb on - strand, within MMJJ_RS03840 at 714.833 kb on + strand, within MMJJ_RS03840 at 714.834 kb on - strand at 714.840 kb on - strand at 714.844 kb on - strand, within MMJJ_RS03840 at 714.881 kb on + strand at 714.897 kb on - strand at 714.899 kb on - strand, within MMJJ_RS03840 at 715.036 kb on - strand at 715.040 kb on - strand at 715.041 kb on + strand at 715.091 kb on + strand at 715.157 kb on + strand at 715.202 kb on - strand at 715.202 kb on - strand at 715.229 kb on - strand at 715.260 kb on - strand at 715.260 kb on - strand at 715.261 kb on + strand at 715.261 kb on + strand at 715.262 kb on - strand at 715.262 kb on - strand at 715.262 kb on - strand at 715.263 kb on + strand at 715.263 kb on + strand at 715.263 kb on + strand at 715.306 kb on - strand at 715.307 kb on + strand at 715.354 kb on - strand at 715.355 kb on + strand at 715.449 kb on - strand at 715.485 kb on + strand, within MMJJ_RS03845 at 715.784 kb on - strand, within MMJJ_RS03845 at 715.812 kb on + strand, within MMJJ_RS03845 at 716.015 kb on - strand, within MMJJ_RS03845 at 716.016 kb on + strand, within MMJJ_RS03845 at 716.016 kb on + strand, within MMJJ_RS03845 at 716.141 kb on - strand, within MMJJ_RS03845 at 716.141 kb on - strand, within MMJJ_RS03845 at 716.166 kb on - strand, within MMJJ_RS03845 at 716.167 kb on + strand, within MMJJ_RS03845 at 716.167 kb on + strand, within MMJJ_RS03845
Per-strain Table
Position Strand Gene LocusTag Fraction formate N-free with 10mM Ammonium chloride remove 712,741 - -0.1 712,745 + -1.1 712,811 - MMJJ_RS03830 0.18 -1.8 712,893 - MMJJ_RS03830 0.28 -3.9 712,919 + MMJJ_RS03830 0.31 -1.1 712,949 - MMJJ_RS03830 0.35 -2.8 712,950 + MMJJ_RS03830 0.35 -2.2 712,957 + MMJJ_RS03830 0.36 -2.2 713,006 - MMJJ_RS03830 0.42 -1.4 713,006 - MMJJ_RS03830 0.42 -2.9 713,007 + MMJJ_RS03830 0.42 -2.1 713,024 + MMJJ_RS03830 0.45 -1.6 713,038 - MMJJ_RS03830 0.46 -1.8 713,039 + MMJJ_RS03830 0.46 -1.5 713,039 + MMJJ_RS03830 0.46 -2.5 713,039 + MMJJ_RS03830 0.46 -3.0 713,043 + MMJJ_RS03830 0.47 -2.9 713,065 + MMJJ_RS03830 0.50 -1.8 713,124 + MMJJ_RS03830 0.57 -2.5 713,124 + MMJJ_RS03830 0.57 -2.6 713,124 + MMJJ_RS03830 0.57 -1.7 713,124 + MMJJ_RS03830 0.57 -2.3 713,124 + MMJJ_RS03830 0.57 -0.7 713,197 - MMJJ_RS03830 0.66 -5.7 713,198 + MMJJ_RS03830 0.66 -1.0 713,222 - MMJJ_RS03830 0.69 -1.8 713,242 - MMJJ_RS03830 0.72 -0.5 713,280 + MMJJ_RS03830 0.77 -1.0 713,299 - MMJJ_RS03830 0.79 -2.2 713,306 + MMJJ_RS03830 0.80 -0.8 713,391 + -3.0 713,446 + -1.0 713,459 - -2.0 713,460 + -2.0 713,506 + MMJJ_RS03835 0.16 -0.1 713,580 - MMJJ_RS03835 0.48 +0.1 713,630 - MMJJ_RS03835 0.69 +0.2 713,631 + MMJJ_RS03835 0.70 +0.5 713,640 - MMJJ_RS03835 0.74 -0.6 713,643 + MMJJ_RS03835 0.75 +0.6 713,643 + MMJJ_RS03835 0.75 +0.3 713,656 + MMJJ_RS03835 0.81 +1.2 713,686 + +1.6 713,686 + +1.3 713,701 - +1.1 713,701 - +0.9 713,701 - +0.0 713,702 + -0.6 713,711 - +0.6 713,966 - MMJJ_RS03840 0.18 -0.7 714,027 - MMJJ_RS03840 0.22 -3.1 714,248 - MMJJ_RS03840 0.37 -1.7 714,517 - MMJJ_RS03840 0.55 -2.9 714,517 - MMJJ_RS03840 0.55 -2.5 714,545 - MMJJ_RS03840 0.57 -3.3 714,546 + MMJJ_RS03840 0.57 -2.9 714,658 - MMJJ_RS03840 0.65 -2.1 714,662 + MMJJ_RS03840 0.65 -1.6 714,710 - MMJJ_RS03840 0.68 +0.3 714,832 - MMJJ_RS03840 0.77 -1.5 714,833 + MMJJ_RS03840 0.77 +0.0 714,834 - -1.5 714,840 - -0.1 714,844 - MMJJ_RS03840 0.78 -1.5 714,881 + -1.7 714,897 - -1.5 714,899 - MMJJ_RS03840 0.81 -1.7 715,036 - -1.5 715,040 - -2.5 715,041 + -2.6 715,091 + -1.1 715,157 + -3.4 715,202 - -1.1 715,202 - -1.6 715,229 - -2.3 715,260 - -3.3 715,260 - -2.3 715,261 + -1.5 715,261 + -1.1 715,262 - +0.2 715,262 - +0.2 715,262 - -1.0 715,263 + -1.2 715,263 + -0.7 715,263 + +1.0 715,306 - +0.8 715,307 + +0.6 715,354 - -1.4 715,355 + +1.1 715,449 - -2.5 715,485 + MMJJ_RS03845 0.10 -1.7 715,784 - MMJJ_RS03845 0.27 -1.7 715,812 + MMJJ_RS03845 0.28 -1.6 716,015 - MMJJ_RS03845 0.40 -1.0 716,016 + MMJJ_RS03845 0.40 -1.2 716,016 + MMJJ_RS03845 0.40 -0.5 716,141 - MMJJ_RS03845 0.47 +0.5 716,141 - MMJJ_RS03845 0.47 -0.0 716,166 - MMJJ_RS03845 0.48 -1.5 716,167 + MMJJ_RS03845 0.48 -0.1 716,167 + MMJJ_RS03845 0.48 -2.1
Or see this region's nucleotide sequence