Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03835

Experiment: formate N-free with 10mM Ammonium chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03825 and MMJJ_RS03830 are separated by 37 nucleotidesMMJJ_RS03830 and MMJJ_RS03835 are separated by 5 nucleotidesMMJJ_RS03835 and MMJJ_RS03840 are separated by 9 nucleotides MMJJ_RS03825: MMJJ_RS03825 - DUF1624 domain-containing protein, at 711,892 to 712,632 _RS03825 MMJJ_RS03830: MMJJ_RS03830 - CBS domain-containing protein, at 712,670 to 713,464 _RS03830 MMJJ_RS03835: MMJJ_RS03835 - DUF504 domain-containing protein, at 713,470 to 713,700 _RS03835 MMJJ_RS03840: MMJJ_RS03840 - DHH family phosphoesterase, at 713,710 to 715,170 _RS03840 Position (kb) 713 714Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 712.518 kb on + strand, within MMJJ_RS03825at 712.518 kb on + strand, within MMJJ_RS03825at 712.544 kb on + strand, within MMJJ_RS03825at 712.553 kb on + strand, within MMJJ_RS03825at 712.567 kb on + strandat 712.567 kb on + strandat 712.576 kb on - strandat 712.576 kb on - strandat 712.577 kb on + strandat 712.577 kb on + strandat 712.579 kb on - strandat 712.650 kb on + strandat 712.658 kb on + strandat 712.684 kb on - strandat 712.699 kb on - strandat 712.700 kb on + strandat 712.700 kb on + strandat 712.700 kb on + strandat 712.700 kb on + strandat 712.700 kb on + strandat 712.701 kb on - strandat 712.741 kb on - strandat 712.745 kb on + strandat 712.811 kb on - strand, within MMJJ_RS03830at 712.893 kb on - strand, within MMJJ_RS03830at 712.919 kb on + strand, within MMJJ_RS03830at 712.949 kb on - strand, within MMJJ_RS03830at 712.950 kb on + strand, within MMJJ_RS03830at 712.957 kb on + strand, within MMJJ_RS03830at 713.006 kb on - strand, within MMJJ_RS03830at 713.006 kb on - strand, within MMJJ_RS03830at 713.007 kb on + strand, within MMJJ_RS03830at 713.024 kb on + strand, within MMJJ_RS03830at 713.038 kb on - strand, within MMJJ_RS03830at 713.039 kb on + strand, within MMJJ_RS03830at 713.039 kb on + strand, within MMJJ_RS03830at 713.039 kb on + strand, within MMJJ_RS03830at 713.043 kb on + strand, within MMJJ_RS03830at 713.065 kb on + strand, within MMJJ_RS03830at 713.124 kb on + strand, within MMJJ_RS03830at 713.124 kb on + strand, within MMJJ_RS03830at 713.124 kb on + strand, within MMJJ_RS03830at 713.124 kb on + strand, within MMJJ_RS03830at 713.124 kb on + strand, within MMJJ_RS03830at 713.197 kb on - strand, within MMJJ_RS03830at 713.198 kb on + strand, within MMJJ_RS03830at 713.222 kb on - strand, within MMJJ_RS03830at 713.242 kb on - strand, within MMJJ_RS03830at 713.280 kb on + strand, within MMJJ_RS03830at 713.299 kb on - strand, within MMJJ_RS03830at 713.306 kb on + strand, within MMJJ_RS03830at 713.391 kb on + strandat 713.446 kb on + strandat 713.459 kb on - strandat 713.460 kb on + strandat 713.506 kb on + strand, within MMJJ_RS03835at 713.580 kb on - strand, within MMJJ_RS03835at 713.630 kb on - strand, within MMJJ_RS03835at 713.631 kb on + strand, within MMJJ_RS03835at 713.640 kb on - strand, within MMJJ_RS03835at 713.643 kb on + strand, within MMJJ_RS03835at 713.643 kb on + strand, within MMJJ_RS03835at 713.656 kb on + strand, within MMJJ_RS03835at 713.686 kb on + strandat 713.686 kb on + strandat 713.701 kb on - strandat 713.701 kb on - strandat 713.701 kb on - strandat 713.702 kb on + strandat 713.711 kb on - strandat 713.966 kb on - strand, within MMJJ_RS03840at 714.027 kb on - strand, within MMJJ_RS03840at 714.248 kb on - strand, within MMJJ_RS03840at 714.517 kb on - strand, within MMJJ_RS03840at 714.517 kb on - strand, within MMJJ_RS03840at 714.545 kb on - strand, within MMJJ_RS03840at 714.546 kb on + strand, within MMJJ_RS03840at 714.658 kb on - strand, within MMJJ_RS03840at 714.662 kb on + strand, within MMJJ_RS03840

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Per-strain Table

Position Strand Gene LocusTag Fraction formate N-free with 10mM Ammonium chloride
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712,518 + MMJJ_RS03825 0.84 -0.5
712,518 + MMJJ_RS03825 0.84 -2.3
712,544 + MMJJ_RS03825 0.88 +1.2
712,553 + MMJJ_RS03825 0.89 -0.3
712,567 + -0.1
712,567 + +0.9
712,576 - -0.6
712,576 - +0.9
712,577 + -0.5
712,577 + +0.2
712,579 - +0.2
712,650 + -0.1
712,658 + -0.0
712,684 - -0.9
712,699 - -0.3
712,700 + +0.0
712,700 + -0.3
712,700 + -0.1
712,700 + -0.8
712,700 + -0.8
712,701 - -0.5
712,741 - -0.1
712,745 + -1.1
712,811 - MMJJ_RS03830 0.18 -1.8
712,893 - MMJJ_RS03830 0.28 -3.9
712,919 + MMJJ_RS03830 0.31 -1.1
712,949 - MMJJ_RS03830 0.35 -2.8
712,950 + MMJJ_RS03830 0.35 -2.2
712,957 + MMJJ_RS03830 0.36 -2.2
713,006 - MMJJ_RS03830 0.42 -1.4
713,006 - MMJJ_RS03830 0.42 -2.9
713,007 + MMJJ_RS03830 0.42 -2.1
713,024 + MMJJ_RS03830 0.45 -1.6
713,038 - MMJJ_RS03830 0.46 -1.8
713,039 + MMJJ_RS03830 0.46 -1.5
713,039 + MMJJ_RS03830 0.46 -2.5
713,039 + MMJJ_RS03830 0.46 -3.0
713,043 + MMJJ_RS03830 0.47 -2.9
713,065 + MMJJ_RS03830 0.50 -1.8
713,124 + MMJJ_RS03830 0.57 -2.5
713,124 + MMJJ_RS03830 0.57 -2.6
713,124 + MMJJ_RS03830 0.57 -1.7
713,124 + MMJJ_RS03830 0.57 -2.3
713,124 + MMJJ_RS03830 0.57 -0.7
713,197 - MMJJ_RS03830 0.66 -5.7
713,198 + MMJJ_RS03830 0.66 -1.0
713,222 - MMJJ_RS03830 0.69 -1.8
713,242 - MMJJ_RS03830 0.72 -0.5
713,280 + MMJJ_RS03830 0.77 -1.0
713,299 - MMJJ_RS03830 0.79 -2.2
713,306 + MMJJ_RS03830 0.80 -0.8
713,391 + -3.0
713,446 + -1.0
713,459 - -2.0
713,460 + -2.0
713,506 + MMJJ_RS03835 0.16 -0.1
713,580 - MMJJ_RS03835 0.48 +0.1
713,630 - MMJJ_RS03835 0.69 +0.2
713,631 + MMJJ_RS03835 0.70 +0.5
713,640 - MMJJ_RS03835 0.74 -0.6
713,643 + MMJJ_RS03835 0.75 +0.6
713,643 + MMJJ_RS03835 0.75 +0.3
713,656 + MMJJ_RS03835 0.81 +1.2
713,686 + +1.6
713,686 + +1.3
713,701 - +1.1
713,701 - +0.9
713,701 - +0.0
713,702 + -0.6
713,711 - +0.6
713,966 - MMJJ_RS03840 0.18 -0.7
714,027 - MMJJ_RS03840 0.22 -3.1
714,248 - MMJJ_RS03840 0.37 -1.7
714,517 - MMJJ_RS03840 0.55 -2.9
714,517 - MMJJ_RS03840 0.55 -2.5
714,545 - MMJJ_RS03840 0.57 -3.3
714,546 + MMJJ_RS03840 0.57 -2.9
714,658 - MMJJ_RS03840 0.65 -2.1
714,662 + MMJJ_RS03840 0.65 -1.6

Or see this region's nucleotide sequence