Experiment: formate N-free with 10mM Ammonium chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03050 and MMJJ_RS03055 are separated by 140 nucleotides MMJJ_RS03055 and MMJJ_RS03060 are separated by 31 nucleotides MMJJ_RS03060 and MMJJ_RS03065 are separated by 17 nucleotides
MMJJ_RS03050: MMJJ_RS03050 - hypothetical protein, at 572,931 to 574,211
_RS03050
MMJJ_RS03055: MMJJ_RS03055 - hypothetical protein, at 574,352 to 574,804
_RS03055
MMJJ_RS03060: MMJJ_RS03060 - methanogenesis marker 7 protein, at 574,836 to 575,750
_RS03060
MMJJ_RS03065: MMJJ_RS03065 - CBS domain-containing protein, at 575,768 to 576,733
_RS03065
Position (kb) 574
575
576 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 573.857 kb on - strand, within MMJJ_RS03050 at 573.857 kb on - strand, within MMJJ_RS03050 at 573.857 kb on - strand, within MMJJ_RS03050 at 573.857 kb on - strand, within MMJJ_RS03050 at 573.858 kb on + strand, within MMJJ_RS03050 at 573.858 kb on + strand, within MMJJ_RS03050 at 573.864 kb on + strand, within MMJJ_RS03050 at 573.882 kb on - strand, within MMJJ_RS03050 at 573.882 kb on - strand, within MMJJ_RS03050 at 573.882 kb on - strand at 573.935 kb on + strand, within MMJJ_RS03050 at 573.946 kb on - strand, within MMJJ_RS03050 at 573.957 kb on + strand, within MMJJ_RS03050 at 573.964 kb on - strand, within MMJJ_RS03050 at 573.964 kb on - strand, within MMJJ_RS03050 at 574.015 kb on - strand, within MMJJ_RS03050 at 574.015 kb on - strand, within MMJJ_RS03050 at 574.015 kb on - strand, within MMJJ_RS03050 at 574.023 kb on + strand, within MMJJ_RS03050 at 574.063 kb on + strand, within MMJJ_RS03050 at 574.063 kb on + strand, within MMJJ_RS03050 at 574.094 kb on - strand at 574.098 kb on - strand at 574.117 kb on - strand at 574.118 kb on + strand at 574.120 kb on - strand at 574.120 kb on - strand at 574.120 kb on - strand at 574.120 kb on - strand at 574.121 kb on + strand at 574.121 kb on + strand at 574.130 kb on - strand at 574.131 kb on + strand at 574.143 kb on + strand at 574.157 kb on - strand at 574.171 kb on - strand at 574.193 kb on - strand at 574.318 kb on - strand at 574.319 kb on + strand at 574.319 kb on + strand at 574.353 kb on - strand at 574.354 kb on + strand at 574.359 kb on - strand at 574.359 kb on - strand at 574.359 kb on - strand at 574.360 kb on + strand at 574.360 kb on + strand at 574.360 kb on + strand at 574.361 kb on - strand at 574.361 kb on - strand at 574.361 kb on - strand at 574.361 kb on - strand at 574.362 kb on + strand at 574.362 kb on + strand at 574.362 kb on + strand at 574.362 kb on + strand at 574.362 kb on + strand at 574.362 kb on + strand at 574.365 kb on - strand at 574.449 kb on + strand, within MMJJ_RS03055 at 574.472 kb on - strand, within MMJJ_RS03055 at 574.592 kb on - strand, within MMJJ_RS03055 at 574.593 kb on + strand, within MMJJ_RS03055 at 574.615 kb on - strand at 574.690 kb on - strand at 574.690 kb on - strand, within MMJJ_RS03055 at 574.837 kb on - strand at 574.917 kb on + strand at 574.921 kb on - strand at 574.921 kb on - strand at 574.921 kb on - strand at 574.922 kb on + strand at 574.922 kb on + strand at 574.942 kb on - strand, within MMJJ_RS03060 at 574.943 kb on + strand, within MMJJ_RS03060 at 574.983 kb on + strand, within MMJJ_RS03060 at 575.236 kb on - strand, within MMJJ_RS03060 at 575.236 kb on - strand at 575.468 kb on + strand, within MMJJ_RS03060 at 575.560 kb on + strand, within MMJJ_RS03060 at 575.636 kb on + strand, within MMJJ_RS03060 at 575.891 kb on - strand, within MMJJ_RS03065 at 575.894 kb on - strand, within MMJJ_RS03065 at 575.894 kb on - strand, within MMJJ_RS03065 at 575.921 kb on - strand, within MMJJ_RS03065 at 575.941 kb on - strand, within MMJJ_RS03065 at 575.944 kb on - strand, within MMJJ_RS03065 at 575.948 kb on - strand, within MMJJ_RS03065 at 575.965 kb on - strand, within MMJJ_RS03065 at 575.965 kb on - strand, within MMJJ_RS03065 at 575.966 kb on + strand, within MMJJ_RS03065 at 575.978 kb on - strand, within MMJJ_RS03065 at 575.979 kb on + strand, within MMJJ_RS03065 at 576.014 kb on - strand, within MMJJ_RS03065 at 576.014 kb on - strand, within MMJJ_RS03065 at 576.108 kb on + strand, within MMJJ_RS03065 at 576.108 kb on + strand, within MMJJ_RS03065 at 576.157 kb on + strand, within MMJJ_RS03065 at 576.160 kb on - strand, within MMJJ_RS03065 at 576.167 kb on + strand, within MMJJ_RS03065 at 576.167 kb on + strand, within MMJJ_RS03065 at 576.186 kb on + strand, within MMJJ_RS03065 at 576.221 kb on + strand, within MMJJ_RS03065 at 576.221 kb on - strand, within MMJJ_RS03065 at 576.222 kb on + strand, within MMJJ_RS03065 at 576.368 kb on - strand, within MMJJ_RS03065 at 576.368 kb on - strand, within MMJJ_RS03065 at 576.368 kb on - strand, within MMJJ_RS03065 at 576.369 kb on + strand, within MMJJ_RS03065 at 576.369 kb on + strand, within MMJJ_RS03065 at 576.369 kb on + strand, within MMJJ_RS03065 at 576.369 kb on + strand, within MMJJ_RS03065 at 576.397 kb on - strand, within MMJJ_RS03065 at 576.397 kb on - strand, within MMJJ_RS03065 at 576.422 kb on - strand, within MMJJ_RS03065 at 576.437 kb on + strand, within MMJJ_RS03065 at 576.437 kb on + strand, within MMJJ_RS03065 at 576.437 kb on + strand, within MMJJ_RS03065 at 576.466 kb on - strand, within MMJJ_RS03065 at 576.470 kb on - strand, within MMJJ_RS03065 at 576.500 kb on - strand, within MMJJ_RS03065 at 576.500 kb on - strand, within MMJJ_RS03065 at 576.503 kb on + strand, within MMJJ_RS03065 at 576.503 kb on + strand, within MMJJ_RS03065 at 576.563 kb on - strand, within MMJJ_RS03065 at 576.563 kb on - strand, within MMJJ_RS03065 at 576.564 kb on + strand, within MMJJ_RS03065 at 576.564 kb on + strand, within MMJJ_RS03065 at 576.564 kb on + strand, within MMJJ_RS03065 at 576.573 kb on + strand, within MMJJ_RS03065 at 576.596 kb on - strand, within MMJJ_RS03065 at 576.644 kb on + strand at 576.644 kb on + strand at 576.648 kb on + strand at 576.648 kb on + strand at 576.648 kb on + strand at 576.651 kb on - strand at 576.652 kb on + strand at 576.655 kb on - strand at 576.656 kb on + strand at 576.659 kb on - strand at 576.663 kb on - strand at 576.663 kb on - strand at 576.663 kb on - strand at 576.664 kb on + strand at 576.664 kb on + strand at 576.664 kb on + strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.694 kb on - strand at 576.695 kb on + strand at 576.695 kb on + strand at 576.695 kb on + strand at 576.695 kb on + strand at 576.695 kb on + strand at 576.696 kb on - strand at 576.696 kb on - strand at 576.696 kb on - strand at 576.696 kb on - strand at 576.696 kb on - strand at 576.696 kb on - strand at 576.697 kb on + strand at 576.697 kb on + strand at 576.697 kb on + strand at 576.697 kb on + strand at 576.698 kb on - strand at 576.708 kb on + strand at 576.724 kb on - strand at 576.724 kb on - strand at 576.725 kb on + strand at 576.728 kb on - strand at 576.734 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction formate N-free with 10mM Ammonium chloride remove 573,857 - MMJJ_RS03050 0.72 -0.8 573,857 - MMJJ_RS03050 0.72 -0.5 573,857 - MMJJ_RS03050 0.72 +0.2 573,857 - MMJJ_RS03050 0.72 +0.2 573,858 + MMJJ_RS03050 0.72 +0.4 573,858 + MMJJ_RS03050 0.72 -0.8 573,864 + MMJJ_RS03050 0.73 +0.6 573,882 - MMJJ_RS03050 0.74 +0.4 573,882 - MMJJ_RS03050 0.74 -0.5 573,882 - +1.5 573,935 + MMJJ_RS03050 0.78 -0.1 573,946 - MMJJ_RS03050 0.79 -0.3 573,957 + MMJJ_RS03050 0.80 -0.9 573,964 - MMJJ_RS03050 0.81 -0.1 573,964 - MMJJ_RS03050 0.81 -0.5 574,015 - MMJJ_RS03050 0.85 -0.0 574,015 - MMJJ_RS03050 0.85 +0.2 574,015 - MMJJ_RS03050 0.85 -0.6 574,023 + MMJJ_RS03050 0.85 +0.8 574,063 + MMJJ_RS03050 0.88 -0.3 574,063 + MMJJ_RS03050 0.88 -1.1 574,094 - +0.1 574,098 - +0.3 574,117 - -1.4 574,118 + +0.8 574,120 - +1.5 574,120 - +0.2 574,120 - -0.2 574,120 - +1.1 574,121 + -0.7 574,121 + +0.1 574,130 - +0.1 574,131 + +0.3 574,143 + +0.4 574,157 - -0.0 574,171 - +1.5 574,193 - -0.3 574,318 - +0.6 574,319 + -0.1 574,319 + +0.4 574,353 - +1.9 574,354 + +0.2 574,359 - -1.6 574,359 - +0.2 574,359 - -0.6 574,360 + -1.5 574,360 + -0.4 574,360 + -1.1 574,361 - +1.1 574,361 - -0.2 574,361 - +1.1 574,361 - -0.3 574,362 + +0.3 574,362 + -0.3 574,362 + -0.3 574,362 + -0.3 574,362 + -1.0 574,362 + -0.6 574,365 - -2.6 574,449 + MMJJ_RS03055 0.21 -2.1 574,472 - MMJJ_RS03055 0.26 -1.4 574,592 - MMJJ_RS03055 0.53 -2.3 574,593 + MMJJ_RS03055 0.53 -0.7 574,615 - -0.7 574,690 - -1.1 574,690 - MMJJ_RS03055 0.75 -2.9 574,837 - -1.5 574,917 + -1.4 574,921 - -1.1 574,921 - +0.3 574,921 - +0.1 574,922 + -2.8 574,922 + +0.8 574,942 - MMJJ_RS03060 0.12 -2.3 574,943 + MMJJ_RS03060 0.12 -0.4 574,983 + MMJJ_RS03060 0.16 -0.2 575,236 - MMJJ_RS03060 0.44 -1.8 575,236 - -1.1 575,468 + MMJJ_RS03060 0.69 -2.8 575,560 + MMJJ_RS03060 0.79 -3.5 575,636 + MMJJ_RS03060 0.87 -2.8 575,891 - MMJJ_RS03065 0.13 -4.3 575,894 - MMJJ_RS03065 0.13 -3.4 575,894 - MMJJ_RS03065 0.13 -4.4 575,921 - MMJJ_RS03065 0.16 -2.6 575,941 - MMJJ_RS03065 0.18 -3.5 575,944 - MMJJ_RS03065 0.18 -1.8 575,948 - MMJJ_RS03065 0.19 -3.1 575,965 - MMJJ_RS03065 0.20 -5.6 575,965 - MMJJ_RS03065 0.20 -3.2 575,966 + MMJJ_RS03065 0.20 -4.3 575,978 - MMJJ_RS03065 0.22 -1.6 575,979 + MMJJ_RS03065 0.22 -1.6 576,014 - MMJJ_RS03065 0.25 -3.9 576,014 - MMJJ_RS03065 0.25 -3.8 576,108 + MMJJ_RS03065 0.35 -5.7 576,108 + MMJJ_RS03065 0.35 -2.8 576,157 + MMJJ_RS03065 0.40 -1.6 576,160 - MMJJ_RS03065 0.41 -2.6 576,167 + MMJJ_RS03065 0.41 -3.2 576,167 + MMJJ_RS03065 0.41 -3.7 576,186 + MMJJ_RS03065 0.43 -4.4 576,221 + MMJJ_RS03065 0.47 -2.7 576,221 - MMJJ_RS03065 0.47 -2.2 576,222 + MMJJ_RS03065 0.47 -3.4 576,368 - MMJJ_RS03065 0.62 -4.7 576,368 - MMJJ_RS03065 0.62 -2.1 576,368 - MMJJ_RS03065 0.62 -3.7 576,369 + MMJJ_RS03065 0.62 -4.2 576,369 + MMJJ_RS03065 0.62 -3.4 576,369 + MMJJ_RS03065 0.62 -4.2 576,369 + MMJJ_RS03065 0.62 -4.2 576,397 - MMJJ_RS03065 0.65 -2.5 576,397 - MMJJ_RS03065 0.65 -1.1 576,422 - MMJJ_RS03065 0.68 -0.9 576,437 + MMJJ_RS03065 0.69 -3.0 576,437 + MMJJ_RS03065 0.69 -0.6 576,437 + MMJJ_RS03065 0.69 -2.4 576,466 - MMJJ_RS03065 0.72 -2.7 576,470 - MMJJ_RS03065 0.73 -3.1 576,500 - MMJJ_RS03065 0.76 -3.5 576,500 - MMJJ_RS03065 0.76 -1.3 576,503 + MMJJ_RS03065 0.76 -1.9 576,503 + MMJJ_RS03065 0.76 -2.7 576,563 - MMJJ_RS03065 0.82 -2.4 576,563 - MMJJ_RS03065 0.82 -3.9 576,564 + MMJJ_RS03065 0.82 -2.8 576,564 + MMJJ_RS03065 0.82 -4.2 576,564 + MMJJ_RS03065 0.82 -3.1 576,573 + MMJJ_RS03065 0.83 -2.1 576,596 - MMJJ_RS03065 0.86 -3.5 576,644 + -1.1 576,644 + -2.1 576,648 + -1.4 576,648 + -3.8 576,648 + -2.5 576,651 - -3.2 576,652 + -2.1 576,655 - -1.7 576,656 + -3.4 576,659 - -2.6 576,663 - -1.9 576,663 - -4.1 576,663 - +2.9 576,664 + -2.5 576,664 + -4.5 576,664 + -2.9 576,694 - -1.4 576,694 - -2.8 576,694 - -1.7 576,694 - -2.7 576,694 - -2.9 576,694 - -2.8 576,694 - -1.1 576,694 - -4.2 576,694 - -2.3 576,695 + -1.1 576,695 + -1.4 576,695 + -4.6 576,695 + -3.3 576,695 + -3.5 576,696 - -3.1 576,696 - -3.1 576,696 - -4.6 576,696 - -1.6 576,696 - -2.7 576,696 - -3.1 576,697 + -2.5 576,697 + -4.1 576,697 + -2.1 576,697 + -1.8 576,698 - -3.9 576,708 + -1.3 576,724 - -1.1 576,724 - -2.5 576,725 + -1.7 576,728 - -4.0 576,734 - -3.2
Or see this region's nucleotide sequence