Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02920

Experiment: formate N-free with 10mM Ammonium chloride

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS02910 and MMJJ_RS02915 are separated by 206 nucleotidesMMJJ_RS02915 and MMJJ_RS02920 are separated by 94 nucleotidesMMJJ_RS02920 and MMJJ_RS02925 are separated by 1 nucleotidesMMJJ_RS02925 and MMJJ_RS02930 are separated by 6 nucleotidesMMJJ_RS02930 and MMJJ_RS02935 are separated by 31 nucleotides MMJJ_RS02910: MMJJ_RS02910 - NifB/NifX family molybdenum-iron cluster-binding protein, at 546,537 to 546,938 _RS02910 MMJJ_RS02915: MMJJ_RS02915 - hypothetical protein, at 547,145 to 547,381 _RS02915 MMJJ_RS02920: MMJJ_RS02920 - 30S ribosomal protein S27ae, at 547,476 to 547,679 _RS02920 MMJJ_RS02925: MMJJ_RS02925 - 30S ribosomal protein S24e, at 547,681 to 547,989 _RS02925 MMJJ_RS02930: MMJJ_RS02930 - DUF359 domain-containing protein, at 547,996 to 548,472 _RS02930 MMJJ_RS02935: MMJJ_RS02935 - DNA-directed RNA polymerase subunit E'', at 548,504 to 548,680 _RS02935 Position (kb) 547 548Strain fitness (log2 ratio) -3 -2 -1 0 1at 546.478 kb on - strandat 546.513 kb on - strandat 546.552 kb on - strandat 546.552 kb on - strandat 546.552 kb on - strandat 546.553 kb on + strandat 546.553 kb on + strandat 546.553 kb on + strandat 546.596 kb on - strand, within MMJJ_RS02910at 546.612 kb on + strand, within MMJJ_RS02910at 546.676 kb on - strand, within MMJJ_RS02910at 546.712 kb on - strand, within MMJJ_RS02910at 546.715 kb on - strand, within MMJJ_RS02910at 546.716 kb on + strand, within MMJJ_RS02910at 546.770 kb on - strand, within MMJJ_RS02910at 546.781 kb on - strand, within MMJJ_RS02910at 546.800 kb on - strand, within MMJJ_RS02910at 546.801 kb on + strand, within MMJJ_RS02910at 546.802 kb on - strand, within MMJJ_RS02910at 546.803 kb on + strand, within MMJJ_RS02910at 546.803 kb on + strand, within MMJJ_RS02910at 546.803 kb on + strand, within MMJJ_RS02910at 546.803 kb on + strand, within MMJJ_RS02910at 546.803 kb on + strand, within MMJJ_RS02910at 546.805 kb on - strand, within MMJJ_RS02910at 546.808 kb on - strand, within MMJJ_RS02910at 546.809 kb on + strand, within MMJJ_RS02910at 546.809 kb on + strand, within MMJJ_RS02910at 546.810 kb on - strand, within MMJJ_RS02910at 546.810 kb on - strand, within MMJJ_RS02910at 546.810 kb on - strand, within MMJJ_RS02910at 546.811 kb on + strand, within MMJJ_RS02910at 546.811 kb on + strand, within MMJJ_RS02910at 546.844 kb on - strand, within MMJJ_RS02910at 546.862 kb on - strand, within MMJJ_RS02910at 546.864 kb on - strand, within MMJJ_RS02910at 546.888 kb on + strand, within MMJJ_RS02910at 546.910 kb on - strandat 546.911 kb on + strandat 546.928 kb on - strandat 546.994 kb on + strandat 547.014 kb on + strandat 547.021 kb on + strandat 547.025 kb on + strandat 547.025 kb on + strandat 547.042 kb on + strandat 547.043 kb on - strandat 547.043 kb on - strandat 547.055 kb on - strandat 547.056 kb on + strandat 547.060 kb on - strandat 547.079 kb on - strandat 547.083 kb on + strandat 547.086 kb on - strandat 547.086 kb on - strandat 547.086 kb on - strandat 547.110 kb on - strandat 547.128 kb on - strandat 547.128 kb on - strandat 547.161 kb on - strandat 547.162 kb on + strandat 547.162 kb on + strandat 547.181 kb on - strand, within MMJJ_RS02915at 547.181 kb on - strand, within MMJJ_RS02915at 547.182 kb on + strand, within MMJJ_RS02915at 547.182 kb on + strand, within MMJJ_RS02915at 547.201 kb on - strand, within MMJJ_RS02915at 547.229 kb on - strand, within MMJJ_RS02915at 547.285 kb on - strand, within MMJJ_RS02915at 547.323 kb on - strand, within MMJJ_RS02915at 547.323 kb on - strand, within MMJJ_RS02915at 547.323 kb on - strand, within MMJJ_RS02915at 547.324 kb on + strand, within MMJJ_RS02915at 547.324 kb on + strand, within MMJJ_RS02915at 547.375 kb on + strandat 547.384 kb on + strandat 547.384 kb on + strandat 547.416 kb on + strandat 547.439 kb on + strandat 547.448 kb on - strandat 547.459 kb on - strandat 547.460 kb on + strandat 547.465 kb on + strandat 547.465 kb on + strandat 547.465 kb on + strandat 547.467 kb on - strandat 547.468 kb on + strandat 547.520 kb on + strand, within MMJJ_RS02920at 547.566 kb on - strand, within MMJJ_RS02920at 547.631 kb on + strand, within MMJJ_RS02920at 547.633 kb on - strand, within MMJJ_RS02920at 547.694 kb on + strandat 548.301 kb on - strand, within MMJJ_RS02930at 548.468 kb on - strandat 548.483 kb on - strandat 548.484 kb on + strandat 548.484 kb on + strandat 548.484 kb on + strandat 548.484 kb on + strandat 548.485 kb on - strandat 548.486 kb on + strandat 548.486 kb on + strandat 548.500 kb on - strandat 548.505 kb on - strandat 548.506 kb on + strandat 548.506 kb on + strandat 548.506 kb on + strandat 548.534 kb on - strand, within MMJJ_RS02935at 548.534 kb on - strand, within MMJJ_RS02935at 548.535 kb on + strand, within MMJJ_RS02935at 548.667 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction formate N-free with 10mM Ammonium chloride
remove
546,478 - +0.3
546,513 - -2.0
546,552 - -0.2
546,552 - -0.5
546,552 - +0.3
546,553 + -0.1
546,553 + -0.4
546,553 + +0.1
546,596 - MMJJ_RS02910 0.15 -0.3
546,612 + MMJJ_RS02910 0.19 +0.2
546,676 - MMJJ_RS02910 0.35 -0.5
546,712 - MMJJ_RS02910 0.44 -0.4
546,715 - MMJJ_RS02910 0.44 -0.2
546,716 + MMJJ_RS02910 0.45 +0.1
546,770 - MMJJ_RS02910 0.58 -0.3
546,781 - MMJJ_RS02910 0.61 -0.2
546,800 - MMJJ_RS02910 0.65 -1.8
546,801 + MMJJ_RS02910 0.66 -0.1
546,802 - MMJJ_RS02910 0.66 -0.3
546,803 + MMJJ_RS02910 0.66 -0.4
546,803 + MMJJ_RS02910 0.66 -0.1
546,803 + MMJJ_RS02910 0.66 +0.1
546,803 + MMJJ_RS02910 0.66 +0.5
546,803 + MMJJ_RS02910 0.66 +0.7
546,805 - MMJJ_RS02910 0.67 -0.1
546,808 - MMJJ_RS02910 0.67 -0.2
546,809 + MMJJ_RS02910 0.68 -0.2
546,809 + MMJJ_RS02910 0.68 +0.4
546,810 - MMJJ_RS02910 0.68 -0.6
546,810 - MMJJ_RS02910 0.68 +0.1
546,810 - MMJJ_RS02910 0.68 +0.3
546,811 + MMJJ_RS02910 0.68 -1.2
546,811 + MMJJ_RS02910 0.68 +0.4
546,844 - MMJJ_RS02910 0.76 -0.9
546,862 - MMJJ_RS02910 0.81 -0.0
546,864 - MMJJ_RS02910 0.81 +0.8
546,888 + MMJJ_RS02910 0.87 +0.2
546,910 - +1.0
546,911 + +0.3
546,928 - +0.6
546,994 + +1.0
547,014 + -1.9
547,021 + +0.4
547,025 + -0.1
547,025 + +0.2
547,042 + +0.1
547,043 - -0.1
547,043 - -0.0
547,055 - +0.1
547,056 + -0.3
547,060 - +0.1
547,079 - +0.2
547,083 + +1.2
547,086 - +0.6
547,086 - +0.6
547,086 - +0.2
547,110 - +0.6
547,128 - -0.1
547,128 - +0.3
547,161 - -0.2
547,162 + +1.3
547,162 + +0.5
547,181 - MMJJ_RS02915 0.15 -0.3
547,181 - MMJJ_RS02915 0.15 +0.3
547,182 + MMJJ_RS02915 0.16 -0.3
547,182 + MMJJ_RS02915 0.16 +1.1
547,201 - MMJJ_RS02915 0.24 -0.5
547,229 - MMJJ_RS02915 0.35 -0.6
547,285 - MMJJ_RS02915 0.59 -0.4
547,323 - MMJJ_RS02915 0.75 +0.0
547,323 - MMJJ_RS02915 0.75 -2.3
547,323 - MMJJ_RS02915 0.75 +0.3
547,324 + MMJJ_RS02915 0.76 -0.6
547,324 + MMJJ_RS02915 0.76 -0.2
547,375 + -0.1
547,384 + +0.6
547,384 + +0.6
547,416 + -0.2
547,439 + -0.8
547,448 - +0.2
547,459 - +0.9
547,460 + -0.8
547,465 + +0.1
547,465 + +0.0
547,465 + -0.4
547,467 - -0.9
547,468 + -1.7
547,520 + MMJJ_RS02920 0.22 -2.4
547,566 - MMJJ_RS02920 0.44 -2.9
547,631 + MMJJ_RS02920 0.76 -1.0
547,633 - MMJJ_RS02920 0.77 -2.4
547,694 + -2.3
548,301 - MMJJ_RS02930 0.64 -1.4
548,468 - -1.0
548,483 - -0.9
548,484 + -0.4
548,484 + -0.2
548,484 + -1.6
548,484 + -1.1
548,485 - -1.2
548,486 + -1.5
548,486 + -1.4
548,500 - -0.8
548,505 - -0.5
548,506 + -1.7
548,506 + +0.5
548,506 + +0.5
548,534 - MMJJ_RS02935 0.17 -1.5
548,534 - MMJJ_RS02935 0.17 -0.7
548,535 + MMJJ_RS02935 0.18 -1.3
548,667 + +0.5

Or see this region's nucleotide sequence