Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01565

Experiment: formate N-free with 10mM Ammonium chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01555 and MMJJ_RS01560 are separated by 62 nucleotidesMMJJ_RS01560 and MMJJ_RS01565 are separated by 43 nucleotidesMMJJ_RS01565 and MMJJ_RS01570 are separated by 27 nucleotides MMJJ_RS01555: MMJJ_RS01555 - Na/Pi cotransporter family protein, at 302,418 to 304,043 _RS01555 MMJJ_RS01560: MMJJ_RS01560 - DUF2115 domain-containing protein, at 304,106 to 304,594 _RS01560 MMJJ_RS01565: MMJJ_RS01565 - TIGR00267 family protein, at 304,638 to 305,198 _RS01565 MMJJ_RS01570: MMJJ_RS01570 - SulP family inorganic anion transporter, at 305,226 to 306,845 _RS01570 Position (kb) 304 305 306Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 303.648 kb on + strand, within MMJJ_RS01555at 303.649 kb on - strand, within MMJJ_RS01555at 303.649 kb on - strand, within MMJJ_RS01555at 303.650 kb on + strand, within MMJJ_RS01555at 303.653 kb on - strand, within MMJJ_RS01555at 303.659 kb on - strand, within MMJJ_RS01555at 303.660 kb on + strand, within MMJJ_RS01555at 303.660 kb on + strand, within MMJJ_RS01555at 303.660 kb on + strand, within MMJJ_RS01555at 303.701 kb on + strand, within MMJJ_RS01555at 303.701 kb on + strand, within MMJJ_RS01555at 303.701 kb on + strand, within MMJJ_RS01555at 303.701 kb on + strand, within MMJJ_RS01555at 303.718 kb on - strand, within MMJJ_RS01555at 303.741 kb on + strand, within MMJJ_RS01555at 303.780 kb on + strand, within MMJJ_RS01555at 303.785 kb on + strand, within MMJJ_RS01555at 303.787 kb on - strand, within MMJJ_RS01555at 303.788 kb on + strand, within MMJJ_RS01555at 303.788 kb on + strand, within MMJJ_RS01555at 303.797 kb on + strand, within MMJJ_RS01555at 303.808 kb on - strand, within MMJJ_RS01555at 303.809 kb on + strand, within MMJJ_RS01555at 303.850 kb on - strand, within MMJJ_RS01555at 304.051 kb on - strandat 304.087 kb on - strandat 304.087 kb on - strandat 304.088 kb on + strandat 304.088 kb on + strandat 304.127 kb on + strandat 304.498 kb on - strand, within MMJJ_RS01560at 304.551 kb on - strandat 304.620 kb on - strandat 304.620 kb on - strandat 304.628 kb on - strandat 304.628 kb on - strandat 304.628 kb on - strandat 304.628 kb on - strandat 304.629 kb on + strandat 304.629 kb on + strandat 304.631 kb on - strandat 304.635 kb on - strandat 304.635 kb on - strandat 304.636 kb on + strandat 304.636 kb on + strandat 304.636 kb on + strandat 304.648 kb on + strandat 304.786 kb on + strand, within MMJJ_RS01565at 304.820 kb on - strand, within MMJJ_RS01565at 304.873 kb on - strand, within MMJJ_RS01565at 304.874 kb on + strand, within MMJJ_RS01565at 304.874 kb on + strand, within MMJJ_RS01565at 304.886 kb on + strand, within MMJJ_RS01565at 304.987 kb on + strand, within MMJJ_RS01565at 305.016 kb on - strand, within MMJJ_RS01565at 305.018 kb on - strand, within MMJJ_RS01565at 305.025 kb on - strand, within MMJJ_RS01565at 305.027 kb on - strand, within MMJJ_RS01565at 305.063 kb on - strand, within MMJJ_RS01565at 305.064 kb on + strand, within MMJJ_RS01565at 305.064 kb on + strand, within MMJJ_RS01565at 305.146 kb on - strandat 305.146 kb on - strandat 305.146 kb on - strandat 305.146 kb on - strandat 305.146 kb on - strandat 305.146 kb on - strandat 305.147 kb on + strandat 305.147 kb on + strandat 305.147 kb on + strandat 305.147 kb on + strandat 305.147 kb on + strandat 305.189 kb on - strandat 305.200 kb on + strandat 305.214 kb on - strandat 305.228 kb on + strandat 305.228 kb on + strandat 305.264 kb on - strandat 305.276 kb on - strandat 305.277 kb on + strandat 305.283 kb on - strandat 305.284 kb on + strandat 305.288 kb on - strandat 305.307 kb on - strandat 305.363 kb on - strandat 305.364 kb on + strandat 305.365 kb on - strandat 305.365 kb on - strandat 305.366 kb on + strandat 305.366 kb on + strandat 305.382 kb on + strandat 305.410 kb on - strand, within MMJJ_RS01570at 305.433 kb on - strand, within MMJJ_RS01570at 305.434 kb on + strand, within MMJJ_RS01570at 305.470 kb on + strand, within MMJJ_RS01570at 305.521 kb on - strand, within MMJJ_RS01570at 305.521 kb on - strand, within MMJJ_RS01570at 305.522 kb on + strand, within MMJJ_RS01570at 305.522 kb on + strand, within MMJJ_RS01570at 305.522 kb on + strand, within MMJJ_RS01570at 305.524 kb on + strand, within MMJJ_RS01570at 305.524 kb on + strand, within MMJJ_RS01570at 305.524 kb on + strand, within MMJJ_RS01570at 305.524 kb on + strand, within MMJJ_RS01570at 305.540 kb on - strand, within MMJJ_RS01570at 305.541 kb on + strand, within MMJJ_RS01570at 305.559 kb on - strand, within MMJJ_RS01570at 305.560 kb on + strand, within MMJJ_RS01570at 305.560 kb on + strand, within MMJJ_RS01570at 305.599 kb on + strand, within MMJJ_RS01570at 305.603 kb on - strand, within MMJJ_RS01570at 305.603 kb on - strand, within MMJJ_RS01570at 305.603 kb on - strand, within MMJJ_RS01570at 305.603 kb on - strand, within MMJJ_RS01570at 305.603 kb on - strand, within MMJJ_RS01570at 305.604 kb on + strand, within MMJJ_RS01570at 305.634 kb on - strand, within MMJJ_RS01570at 305.637 kb on - strand, within MMJJ_RS01570at 305.666 kb on - strand, within MMJJ_RS01570at 305.667 kb on + strand, within MMJJ_RS01570at 305.711 kb on - strand, within MMJJ_RS01570at 305.712 kb on + strand, within MMJJ_RS01570at 305.733 kb on - strand, within MMJJ_RS01570at 305.785 kb on + strand, within MMJJ_RS01570at 305.799 kb on - strand, within MMJJ_RS01570at 305.800 kb on + strand, within MMJJ_RS01570at 305.804 kb on - strand, within MMJJ_RS01570at 305.804 kb on - strand, within MMJJ_RS01570at 305.804 kb on - strand, within MMJJ_RS01570at 305.805 kb on + strand, within MMJJ_RS01570at 305.805 kb on + strand, within MMJJ_RS01570at 305.809 kb on + strand, within MMJJ_RS01570at 305.817 kb on - strand, within MMJJ_RS01570at 305.820 kb on - strand, within MMJJ_RS01570at 305.820 kb on - strand, within MMJJ_RS01570at 305.868 kb on + strand, within MMJJ_RS01570at 305.868 kb on + strand, within MMJJ_RS01570at 305.871 kb on - strand, within MMJJ_RS01570at 305.872 kb on + strand, within MMJJ_RS01570at 305.951 kb on - strand, within MMJJ_RS01570at 305.951 kb on - strand, within MMJJ_RS01570at 305.951 kb on - strand, within MMJJ_RS01570at 305.963 kb on - strand, within MMJJ_RS01570at 305.997 kb on - strand, within MMJJ_RS01570at 306.003 kb on - strand, within MMJJ_RS01570at 306.003 kb on - strand, within MMJJ_RS01570at 306.025 kb on + strand, within MMJJ_RS01570at 306.069 kb on + strand, within MMJJ_RS01570at 306.174 kb on - strand, within MMJJ_RS01570at 306.185 kb on + strand, within MMJJ_RS01570at 306.194 kb on - strand, within MMJJ_RS01570at 306.194 kb on - strand, within MMJJ_RS01570at 306.195 kb on + strand, within MMJJ_RS01570

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Per-strain Table

Position Strand Gene LocusTag Fraction formate N-free with 10mM Ammonium chloride
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303,648 + MMJJ_RS01555 0.76 -0.4
303,649 - MMJJ_RS01555 0.76 -0.2
303,649 - MMJJ_RS01555 0.76 -0.0
303,650 + MMJJ_RS01555 0.76 +0.1
303,653 - MMJJ_RS01555 0.76 -0.1
303,659 - MMJJ_RS01555 0.76 +0.4
303,660 + MMJJ_RS01555 0.76 -0.1
303,660 + MMJJ_RS01555 0.76 -0.3
303,660 + MMJJ_RS01555 0.76 +0.5
303,701 + MMJJ_RS01555 0.79 -0.4
303,701 + MMJJ_RS01555 0.79 -0.5
303,701 + MMJJ_RS01555 0.79 -1.1
303,701 + MMJJ_RS01555 0.79 +0.8
303,718 - MMJJ_RS01555 0.80 -2.1
303,741 + MMJJ_RS01555 0.81 -1.3
303,780 + MMJJ_RS01555 0.84 +0.1
303,785 + MMJJ_RS01555 0.84 +0.3
303,787 - MMJJ_RS01555 0.84 +0.3
303,788 + MMJJ_RS01555 0.84 -0.5
303,788 + MMJJ_RS01555 0.84 +0.1
303,797 + MMJJ_RS01555 0.85 -0.5
303,808 - MMJJ_RS01555 0.85 +0.3
303,809 + MMJJ_RS01555 0.86 -0.3
303,850 - MMJJ_RS01555 0.88 +0.1
304,051 - -0.2
304,087 - -0.1
304,087 - +0.2
304,088 + -0.9
304,088 + +0.5
304,127 + -0.7
304,498 - MMJJ_RS01560 0.80 -2.7
304,551 - -2.5
304,620 - -0.7
304,620 - -0.5
304,628 - -0.0
304,628 - -1.2
304,628 - +0.1
304,628 - +1.5
304,629 + -0.4
304,629 + +0.9
304,631 - +0.1
304,635 - +0.3
304,635 - -0.9
304,636 + +0.0
304,636 + -0.7
304,636 + -0.7
304,648 + +1.1
304,786 + MMJJ_RS01565 0.26 -0.4
304,820 - MMJJ_RS01565 0.32 -3.4
304,873 - MMJJ_RS01565 0.42 -2.7
304,874 + MMJJ_RS01565 0.42 -2.6
304,874 + MMJJ_RS01565 0.42 -3.6
304,886 + MMJJ_RS01565 0.44 -2.6
304,987 + MMJJ_RS01565 0.62 -3.0
305,016 - MMJJ_RS01565 0.67 -3.4
305,018 - MMJJ_RS01565 0.68 -0.7
305,025 - MMJJ_RS01565 0.69 -0.1
305,027 - MMJJ_RS01565 0.69 -1.4
305,063 - MMJJ_RS01565 0.76 -3.5
305,064 + MMJJ_RS01565 0.76 -2.0
305,064 + MMJJ_RS01565 0.76 -0.9
305,146 - -3.9
305,146 - -2.5
305,146 - -1.6
305,146 - -2.9
305,146 - -2.6
305,146 - -1.9
305,147 + -3.6
305,147 + +0.6
305,147 + -1.3
305,147 + -4.0
305,147 + -3.1
305,189 - -2.6
305,200 + +0.7
305,214 - -0.4
305,228 + -0.3
305,228 + -0.2
305,264 - -0.3
305,276 - +0.4
305,277 + +0.5
305,283 - +1.1
305,284 + -0.2
305,288 - +0.7
305,307 - -0.5
305,363 - -1.1
305,364 + -3.4
305,365 - -0.1
305,365 - +0.4
305,366 + -1.3
305,366 + -0.1
305,382 + +0.8
305,410 - MMJJ_RS01570 0.11 -0.3
305,433 - MMJJ_RS01570 0.13 +0.3
305,434 + MMJJ_RS01570 0.13 +0.9
305,470 + MMJJ_RS01570 0.15 -0.7
305,521 - MMJJ_RS01570 0.18 -0.3
305,521 - MMJJ_RS01570 0.18 -0.2
305,522 + MMJJ_RS01570 0.18 +0.2
305,522 + MMJJ_RS01570 0.18 +0.1
305,522 + MMJJ_RS01570 0.18 +1.1
305,524 + MMJJ_RS01570 0.18 +0.6
305,524 + MMJJ_RS01570 0.18 -0.1
305,524 + MMJJ_RS01570 0.18 +0.0
305,524 + MMJJ_RS01570 0.18 +0.6
305,540 - MMJJ_RS01570 0.19 +1.7
305,541 + MMJJ_RS01570 0.19 +0.1
305,559 - MMJJ_RS01570 0.21 -0.2
305,560 + MMJJ_RS01570 0.21 -0.8
305,560 + MMJJ_RS01570 0.21 -1.0
305,599 + MMJJ_RS01570 0.23 -0.5
305,603 - MMJJ_RS01570 0.23 -0.3
305,603 - MMJJ_RS01570 0.23 -0.2
305,603 - MMJJ_RS01570 0.23 +0.0
305,603 - MMJJ_RS01570 0.23 +0.9
305,603 - MMJJ_RS01570 0.23 -0.4
305,604 + MMJJ_RS01570 0.23 +1.2
305,634 - MMJJ_RS01570 0.25 -0.1
305,637 - MMJJ_RS01570 0.25 -2.2
305,666 - MMJJ_RS01570 0.27 +0.6
305,667 + MMJJ_RS01570 0.27 +1.0
305,711 - MMJJ_RS01570 0.30 -0.4
305,712 + MMJJ_RS01570 0.30 -0.1
305,733 - MMJJ_RS01570 0.31 -0.7
305,785 + MMJJ_RS01570 0.35 -3.0
305,799 - MMJJ_RS01570 0.35 -1.7
305,800 + MMJJ_RS01570 0.35 -0.4
305,804 - MMJJ_RS01570 0.36 +0.5
305,804 - MMJJ_RS01570 0.36 -0.2
305,804 - MMJJ_RS01570 0.36 -0.3
305,805 + MMJJ_RS01570 0.36 -0.3
305,805 + MMJJ_RS01570 0.36 -1.0
305,809 + MMJJ_RS01570 0.36 -1.6
305,817 - MMJJ_RS01570 0.36 +1.0
305,820 - MMJJ_RS01570 0.37 +0.5
305,820 - MMJJ_RS01570 0.37 -0.9
305,868 + MMJJ_RS01570 0.40 -0.3
305,868 + MMJJ_RS01570 0.40 -0.0
305,871 - MMJJ_RS01570 0.40 +0.1
305,872 + MMJJ_RS01570 0.40 +0.6
305,951 - MMJJ_RS01570 0.45 -0.1
305,951 - MMJJ_RS01570 0.45 -1.3
305,951 - MMJJ_RS01570 0.45 -0.3
305,963 - MMJJ_RS01570 0.45 +1.8
305,997 - MMJJ_RS01570 0.48 -0.1
306,003 - MMJJ_RS01570 0.48 -0.6
306,003 - MMJJ_RS01570 0.48 -0.5
306,025 + MMJJ_RS01570 0.49 -0.0
306,069 + MMJJ_RS01570 0.52 +1.0
306,174 - MMJJ_RS01570 0.59 +0.7
306,185 + MMJJ_RS01570 0.59 -0.0
306,194 - MMJJ_RS01570 0.60 +0.0
306,194 - MMJJ_RS01570 0.60 -0.4
306,195 + MMJJ_RS01570 0.60 -0.0

Or see this region's nucleotide sequence