Experiment: formate N-free with 10mM Ammonium chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01425 and MMJJ_RS01430 are separated by 85 nucleotides MMJJ_RS01430 and MMJJ_RS01435 are separated by 5 nucleotides MMJJ_RS01435 and MMJJ_RS01440 are separated by 69 nucleotides
MMJJ_RS01425: MMJJ_RS01425 - cell wall-binding protein, at 278,189 to 279,145
_RS01425
MMJJ_RS01430: MMJJ_RS01430 - hypothetical protein, at 279,231 to 279,776
_RS01430
MMJJ_RS01435: MMJJ_RS01435 - 4Fe-4S binding protein, at 279,782 to 280,483
_RS01435
MMJJ_RS01440: MMJJ_RS01440 - NCS2 family permease, at 280,553 to 281,854
_RS01440
Position (kb) 279
280 Strain fitness (log2 ratio) -2
-1
0
1
2 at 278.243 kb on - strand at 278.263 kb on + strand at 278.263 kb on + strand at 278.266 kb on + strand at 278.292 kb on - strand, within MMJJ_RS01425 at 278.302 kb on - strand, within MMJJ_RS01425 at 278.366 kb on + strand, within MMJJ_RS01425 at 278.371 kb on + strand, within MMJJ_RS01425 at 278.379 kb on - strand, within MMJJ_RS01425 at 278.403 kb on - strand, within MMJJ_RS01425 at 278.442 kb on + strand, within MMJJ_RS01425 at 278.468 kb on + strand, within MMJJ_RS01425 at 278.518 kb on - strand, within MMJJ_RS01425 at 278.519 kb on + strand, within MMJJ_RS01425 at 278.519 kb on + strand, within MMJJ_RS01425 at 278.519 kb on + strand, within MMJJ_RS01425 at 278.523 kb on - strand, within MMJJ_RS01425 at 278.524 kb on + strand at 278.527 kb on - strand, within MMJJ_RS01425 at 278.591 kb on + strand, within MMJJ_RS01425 at 278.613 kb on - strand, within MMJJ_RS01425 at 278.623 kb on + strand, within MMJJ_RS01425 at 278.626 kb on + strand, within MMJJ_RS01425 at 278.671 kb on - strand, within MMJJ_RS01425 at 278.686 kb on - strand, within MMJJ_RS01425 at 278.709 kb on + strand, within MMJJ_RS01425 at 278.709 kb on + strand, within MMJJ_RS01425 at 278.715 kb on + strand, within MMJJ_RS01425 at 278.727 kb on - strand, within MMJJ_RS01425 at 278.816 kb on + strand, within MMJJ_RS01425 at 278.841 kb on - strand, within MMJJ_RS01425 at 278.842 kb on + strand, within MMJJ_RS01425 at 278.883 kb on + strand, within MMJJ_RS01425 at 278.883 kb on + strand, within MMJJ_RS01425 at 278.892 kb on - strand, within MMJJ_RS01425 at 278.893 kb on + strand, within MMJJ_RS01425 at 278.903 kb on - strand, within MMJJ_RS01425 at 278.903 kb on - strand, within MMJJ_RS01425 at 278.903 kb on - strand, within MMJJ_RS01425 at 278.903 kb on - strand, within MMJJ_RS01425 at 278.904 kb on + strand, within MMJJ_RS01425 at 278.919 kb on + strand, within MMJJ_RS01425 at 278.924 kb on - strand, within MMJJ_RS01425 at 278.924 kb on - strand, within MMJJ_RS01425 at 278.925 kb on + strand, within MMJJ_RS01425 at 278.925 kb on + strand, within MMJJ_RS01425 at 278.925 kb on + strand, within MMJJ_RS01425 at 278.930 kb on - strand, within MMJJ_RS01425 at 278.962 kb on + strand, within MMJJ_RS01425 at 278.962 kb on + strand, within MMJJ_RS01425 at 278.968 kb on - strand, within MMJJ_RS01425 at 278.969 kb on + strand, within MMJJ_RS01425 at 279.035 kb on + strand, within MMJJ_RS01425 at 279.157 kb on - strand at 279.158 kb on + strand at 279.158 kb on + strand at 279.159 kb on - strand at 279.159 kb on - strand at 279.160 kb on + strand at 279.208 kb on + strand at 279.210 kb on - strand at 279.210 kb on - strand at 279.213 kb on - strand at 279.213 kb on - strand at 279.213 kb on - strand at 279.214 kb on + strand at 279.216 kb on - strand at 279.216 kb on - strand at 279.217 kb on + strand at 279.218 kb on - strand at 279.218 kb on - strand at 279.218 kb on - strand at 279.219 kb on + strand at 279.259 kb on - strand at 279.260 kb on + strand at 279.278 kb on + strand at 279.315 kb on + strand, within MMJJ_RS01430 at 279.354 kb on - strand, within MMJJ_RS01430 at 279.354 kb on - strand at 279.354 kb on - strand, within MMJJ_RS01430 at 279.354 kb on - strand, within MMJJ_RS01430 at 279.355 kb on + strand, within MMJJ_RS01430 at 279.355 kb on + strand, within MMJJ_RS01430 at 279.356 kb on - strand, within MMJJ_RS01430 at 279.363 kb on + strand, within MMJJ_RS01430 at 279.368 kb on - strand, within MMJJ_RS01430 at 279.447 kb on - strand, within MMJJ_RS01430 at 279.448 kb on + strand, within MMJJ_RS01430 at 279.457 kb on - strand, within MMJJ_RS01430 at 279.458 kb on + strand, within MMJJ_RS01430 at 279.458 kb on + strand, within MMJJ_RS01430 at 279.468 kb on - strand, within MMJJ_RS01430 at 279.468 kb on - strand, within MMJJ_RS01430 at 279.469 kb on + strand, within MMJJ_RS01430 at 279.503 kb on - strand, within MMJJ_RS01430 at 279.504 kb on + strand, within MMJJ_RS01430 at 279.567 kb on + strand, within MMJJ_RS01430 at 279.574 kb on - strand, within MMJJ_RS01430 at 279.574 kb on - strand, within MMJJ_RS01430 at 279.588 kb on + strand, within MMJJ_RS01430 at 279.611 kb on + strand, within MMJJ_RS01430 at 279.611 kb on + strand, within MMJJ_RS01430 at 279.635 kb on + strand, within MMJJ_RS01430 at 279.640 kb on + strand, within MMJJ_RS01430 at 279.677 kb on + strand, within MMJJ_RS01430 at 279.681 kb on + strand, within MMJJ_RS01430 at 279.747 kb on + strand at 279.779 kb on - strand at 279.779 kb on - strand at 279.780 kb on + strand at 279.814 kb on + strand at 279.869 kb on + strand, within MMJJ_RS01435 at 279.869 kb on + strand, within MMJJ_RS01435 at 279.873 kb on - strand, within MMJJ_RS01435 at 279.982 kb on - strand, within MMJJ_RS01435 at 279.982 kb on - strand, within MMJJ_RS01435 at 279.983 kb on + strand, within MMJJ_RS01435 at 279.983 kb on + strand, within MMJJ_RS01435 at 279.985 kb on + strand, within MMJJ_RS01435 at 280.016 kb on - strand, within MMJJ_RS01435 at 280.017 kb on + strand, within MMJJ_RS01435 at 280.018 kb on - strand, within MMJJ_RS01435 at 280.019 kb on + strand, within MMJJ_RS01435 at 280.035 kb on - strand, within MMJJ_RS01435 at 280.040 kb on + strand, within MMJJ_RS01435 at 280.040 kb on + strand, within MMJJ_RS01435 at 280.063 kb on + strand, within MMJJ_RS01435 at 280.063 kb on + strand, within MMJJ_RS01435 at 280.091 kb on - strand, within MMJJ_RS01435 at 280.091 kb on - strand, within MMJJ_RS01435 at 280.095 kb on - strand, within MMJJ_RS01435 at 280.100 kb on - strand, within MMJJ_RS01435 at 280.101 kb on + strand at 280.124 kb on - strand, within MMJJ_RS01435 at 280.125 kb on + strand, within MMJJ_RS01435 at 280.125 kb on + strand, within MMJJ_RS01435 at 280.148 kb on - strand, within MMJJ_RS01435 at 280.148 kb on - strand at 280.148 kb on - strand, within MMJJ_RS01435 at 280.148 kb on - strand, within MMJJ_RS01435 at 280.149 kb on + strand, within MMJJ_RS01435 at 280.149 kb on + strand, within MMJJ_RS01435 at 280.149 kb on + strand, within MMJJ_RS01435 at 280.149 kb on + strand, within MMJJ_RS01435 at 280.152 kb on - strand, within MMJJ_RS01435 at 280.153 kb on + strand, within MMJJ_RS01435 at 280.164 kb on - strand, within MMJJ_RS01435 at 280.164 kb on - strand, within MMJJ_RS01435 at 280.165 kb on + strand, within MMJJ_RS01435 at 280.165 kb on + strand, within MMJJ_RS01435 at 280.213 kb on - strand, within MMJJ_RS01435 at 280.213 kb on - strand, within MMJJ_RS01435 at 280.213 kb on - strand, within MMJJ_RS01435 at 280.213 kb on - strand, within MMJJ_RS01435 at 280.214 kb on + strand, within MMJJ_RS01435 at 280.214 kb on + strand, within MMJJ_RS01435 at 280.214 kb on + strand, within MMJJ_RS01435 at 280.214 kb on + strand, within MMJJ_RS01435 at 280.215 kb on - strand, within MMJJ_RS01435 at 280.215 kb on - strand, within MMJJ_RS01435 at 280.215 kb on - strand, within MMJJ_RS01435 at 280.216 kb on + strand, within MMJJ_RS01435 at 280.216 kb on + strand, within MMJJ_RS01435 at 280.221 kb on - strand, within MMJJ_RS01435 at 280.221 kb on - strand, within MMJJ_RS01435 at 280.245 kb on + strand, within MMJJ_RS01435 at 280.272 kb on + strand, within MMJJ_RS01435 at 280.305 kb on - strand, within MMJJ_RS01435 at 280.342 kb on - strand, within MMJJ_RS01435 at 280.343 kb on + strand, within MMJJ_RS01435 at 280.343 kb on + strand, within MMJJ_RS01435 at 280.349 kb on + strand, within MMJJ_RS01435 at 280.391 kb on + strand, within MMJJ_RS01435 at 280.393 kb on - strand, within MMJJ_RS01435 at 280.394 kb on + strand, within MMJJ_RS01435 at 280.394 kb on + strand, within MMJJ_RS01435 at 280.395 kb on - strand, within MMJJ_RS01435 at 280.396 kb on + strand, within MMJJ_RS01435 at 280.424 kb on + strand at 280.467 kb on - strand at 280.468 kb on + strand at 280.473 kb on + strand at 280.473 kb on + strand at 280.503 kb on + strand at 280.513 kb on - strand at 280.517 kb on - strand at 280.518 kb on + strand at 280.536 kb on + strand at 280.599 kb on - strand at 280.599 kb on - strand at 280.614 kb on + strand at 280.667 kb on - strand at 280.668 kb on + strand at 280.692 kb on - strand, within MMJJ_RS01440 at 280.692 kb on - strand, within MMJJ_RS01440 at 280.693 kb on + strand, within MMJJ_RS01440 at 280.693 kb on + strand, within MMJJ_RS01440 at 280.712 kb on - strand, within MMJJ_RS01440 at 280.712 kb on - strand, within MMJJ_RS01440 at 280.720 kb on - strand, within MMJJ_RS01440 at 280.720 kb on - strand, within MMJJ_RS01440 at 280.720 kb on - strand, within MMJJ_RS01440
Per-strain Table
Position Strand Gene LocusTag Fraction formate N-free with 10mM Ammonium chloride remove 278,243 - +0.1 278,263 + +0.6 278,263 + -2.1 278,266 + -0.2 278,292 - MMJJ_RS01425 0.11 +0.6 278,302 - MMJJ_RS01425 0.12 +1.9 278,366 + MMJJ_RS01425 0.18 -0.4 278,371 + MMJJ_RS01425 0.19 -0.5 278,379 - MMJJ_RS01425 0.20 +0.3 278,403 - MMJJ_RS01425 0.22 +0.4 278,442 + MMJJ_RS01425 0.26 +0.2 278,468 + MMJJ_RS01425 0.29 -2.3 278,518 - MMJJ_RS01425 0.34 -1.2 278,519 + MMJJ_RS01425 0.34 +0.1 278,519 + MMJJ_RS01425 0.34 -0.5 278,519 + MMJJ_RS01425 0.34 -1.5 278,523 - MMJJ_RS01425 0.35 +0.4 278,524 + -0.1 278,527 - MMJJ_RS01425 0.35 -0.3 278,591 + MMJJ_RS01425 0.42 -0.8 278,613 - MMJJ_RS01425 0.44 +1.1 278,623 + MMJJ_RS01425 0.45 -0.5 278,626 + MMJJ_RS01425 0.46 -0.4 278,671 - MMJJ_RS01425 0.50 -0.0 278,686 - MMJJ_RS01425 0.52 -0.1 278,709 + MMJJ_RS01425 0.54 -0.0 278,709 + MMJJ_RS01425 0.54 +0.5 278,715 + MMJJ_RS01425 0.55 -0.2 278,727 - MMJJ_RS01425 0.56 +1.3 278,816 + MMJJ_RS01425 0.66 +0.1 278,841 - MMJJ_RS01425 0.68 +0.3 278,842 + MMJJ_RS01425 0.68 -0.5 278,883 + MMJJ_RS01425 0.73 +0.6 278,883 + MMJJ_RS01425 0.73 -0.9 278,892 - MMJJ_RS01425 0.73 +0.9 278,893 + MMJJ_RS01425 0.74 +0.8 278,903 - MMJJ_RS01425 0.75 -1.1 278,903 - MMJJ_RS01425 0.75 -0.2 278,903 - MMJJ_RS01425 0.75 +0.2 278,903 - MMJJ_RS01425 0.75 +0.3 278,904 + MMJJ_RS01425 0.75 -0.7 278,919 + MMJJ_RS01425 0.76 +0.7 278,924 - MMJJ_RS01425 0.77 -0.9 278,924 - MMJJ_RS01425 0.77 +0.2 278,925 + MMJJ_RS01425 0.77 -1.1 278,925 + MMJJ_RS01425 0.77 -0.3 278,925 + MMJJ_RS01425 0.77 +0.2 278,930 - MMJJ_RS01425 0.77 +0.1 278,962 + MMJJ_RS01425 0.81 -0.1 278,962 + MMJJ_RS01425 0.81 -0.8 278,968 - MMJJ_RS01425 0.81 -1.4 278,969 + MMJJ_RS01425 0.82 -0.2 279,035 + MMJJ_RS01425 0.88 +0.2 279,157 - +0.0 279,158 + +0.0 279,158 + -0.1 279,159 - -0.2 279,159 - +0.5 279,160 + +0.3 279,208 + +0.2 279,210 - +0.8 279,210 - +0.8 279,213 - -0.8 279,213 - +1.2 279,213 - -0.5 279,214 + -0.1 279,216 - -0.7 279,216 - +0.3 279,217 + -1.1 279,218 - +0.5 279,218 - +0.6 279,218 - -0.8 279,219 + -0.4 279,259 - +0.7 279,260 + +0.3 279,278 + -0.0 279,315 + MMJJ_RS01430 0.15 +0.4 279,354 - MMJJ_RS01430 0.23 -0.0 279,354 - -0.1 279,354 - MMJJ_RS01430 0.23 -0.0 279,354 - MMJJ_RS01430 0.23 +0.3 279,355 + MMJJ_RS01430 0.23 +0.7 279,355 + MMJJ_RS01430 0.23 -0.1 279,356 - MMJJ_RS01430 0.23 +0.7 279,363 + MMJJ_RS01430 0.24 +0.8 279,368 - MMJJ_RS01430 0.25 +0.1 279,447 - MMJJ_RS01430 0.40 +1.0 279,448 + MMJJ_RS01430 0.40 +0.3 279,457 - MMJJ_RS01430 0.41 +0.5 279,458 + MMJJ_RS01430 0.42 +1.0 279,458 + MMJJ_RS01430 0.42 -0.2 279,468 - MMJJ_RS01430 0.43 +1.9 279,468 - MMJJ_RS01430 0.43 +0.7 279,469 + MMJJ_RS01430 0.44 -0.7 279,503 - MMJJ_RS01430 0.50 +0.2 279,504 + MMJJ_RS01430 0.50 +0.6 279,567 + MMJJ_RS01430 0.62 -0.7 279,574 - MMJJ_RS01430 0.63 -0.4 279,574 - MMJJ_RS01430 0.63 +0.9 279,588 + MMJJ_RS01430 0.65 +0.9 279,611 + MMJJ_RS01430 0.70 +0.8 279,611 + MMJJ_RS01430 0.70 +1.7 279,635 + MMJJ_RS01430 0.74 -0.2 279,640 + MMJJ_RS01430 0.75 -1.1 279,677 + MMJJ_RS01430 0.82 -1.5 279,681 + MMJJ_RS01430 0.82 +0.9 279,747 + +0.3 279,779 - +0.8 279,779 - +0.9 279,780 + +0.0 279,814 + +1.4 279,869 + MMJJ_RS01435 0.12 +0.0 279,869 + MMJJ_RS01435 0.12 +0.8 279,873 - MMJJ_RS01435 0.13 -0.7 279,982 - MMJJ_RS01435 0.28 +0.9 279,982 - MMJJ_RS01435 0.28 +0.0 279,983 + MMJJ_RS01435 0.29 -0.2 279,983 + MMJJ_RS01435 0.29 -0.0 279,985 + MMJJ_RS01435 0.29 -0.7 280,016 - MMJJ_RS01435 0.33 -0.2 280,017 + MMJJ_RS01435 0.33 +0.1 280,018 - MMJJ_RS01435 0.34 +0.7 280,019 + MMJJ_RS01435 0.34 +0.9 280,035 - MMJJ_RS01435 0.36 +0.4 280,040 + MMJJ_RS01435 0.37 +0.9 280,040 + MMJJ_RS01435 0.37 +0.4 280,063 + MMJJ_RS01435 0.40 -0.7 280,063 + MMJJ_RS01435 0.40 +0.9 280,091 - MMJJ_RS01435 0.44 -0.3 280,091 - MMJJ_RS01435 0.44 -0.9 280,095 - MMJJ_RS01435 0.45 +0.7 280,100 - MMJJ_RS01435 0.45 +0.3 280,101 + +0.2 280,124 - MMJJ_RS01435 0.49 +0.9 280,125 + MMJJ_RS01435 0.49 +0.9 280,125 + MMJJ_RS01435 0.49 +0.4 280,148 - MMJJ_RS01435 0.52 +0.2 280,148 - +0.9 280,148 - MMJJ_RS01435 0.52 +0.4 280,148 - MMJJ_RS01435 0.52 +0.9 280,149 + MMJJ_RS01435 0.52 +0.8 280,149 + MMJJ_RS01435 0.52 +0.1 280,149 + MMJJ_RS01435 0.52 +0.2 280,149 + MMJJ_RS01435 0.52 -0.1 280,152 - MMJJ_RS01435 0.53 +0.5 280,153 + MMJJ_RS01435 0.53 +0.9 280,164 - MMJJ_RS01435 0.54 +1.7 280,164 - MMJJ_RS01435 0.54 +0.0 280,165 + MMJJ_RS01435 0.55 +1.2 280,165 + MMJJ_RS01435 0.55 -1.2 280,213 - MMJJ_RS01435 0.61 -0.5 280,213 - MMJJ_RS01435 0.61 +0.9 280,213 - MMJJ_RS01435 0.61 -0.4 280,213 - MMJJ_RS01435 0.61 +1.5 280,214 + MMJJ_RS01435 0.62 -0.9 280,214 + MMJJ_RS01435 0.62 -0.3 280,214 + MMJJ_RS01435 0.62 +0.1 280,214 + MMJJ_RS01435 0.62 -0.0 280,215 - MMJJ_RS01435 0.62 +1.3 280,215 - MMJJ_RS01435 0.62 +0.8 280,215 - MMJJ_RS01435 0.62 -0.0 280,216 + MMJJ_RS01435 0.62 +1.2 280,216 + MMJJ_RS01435 0.62 +0.1 280,221 - MMJJ_RS01435 0.63 +0.6 280,221 - MMJJ_RS01435 0.63 +0.9 280,245 + MMJJ_RS01435 0.66 +1.1 280,272 + MMJJ_RS01435 0.70 +1.4 280,305 - MMJJ_RS01435 0.75 +0.8 280,342 - MMJJ_RS01435 0.80 +0.9 280,343 + MMJJ_RS01435 0.80 +1.0 280,343 + MMJJ_RS01435 0.80 +0.7 280,349 + MMJJ_RS01435 0.81 -0.3 280,391 + MMJJ_RS01435 0.87 +1.4 280,393 - MMJJ_RS01435 0.87 +0.5 280,394 + MMJJ_RS01435 0.87 -1.2 280,394 + MMJJ_RS01435 0.87 +1.0 280,395 - MMJJ_RS01435 0.87 +0.0 280,396 + MMJJ_RS01435 0.87 +0.2 280,424 + -0.6 280,467 - +0.1 280,468 + -1.0 280,473 + -0.2 280,473 + +0.4 280,503 + -0.0 280,513 - +0.0 280,517 - +1.5 280,518 + +0.8 280,536 + +0.3 280,599 - +0.9 280,599 - -0.4 280,614 + -1.2 280,667 - +0.9 280,668 + +0.1 280,692 - MMJJ_RS01440 0.11 -0.1 280,692 - MMJJ_RS01440 0.11 -0.2 280,693 + MMJJ_RS01440 0.11 +0.3 280,693 + MMJJ_RS01440 0.11 +0.4 280,712 - MMJJ_RS01440 0.12 +0.5 280,712 - MMJJ_RS01440 0.12 -0.4 280,720 - MMJJ_RS01440 0.13 +0.0 280,720 - MMJJ_RS01440 0.13 +0.9 280,720 - MMJJ_RS01440 0.13 -0.1
Or see this region's nucleotide sequence