Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00645

Experiment: formate N-free with 10mM Ammonium chloride

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS00640 and MMJJ_RS00645 are separated by 172 nucleotidesMMJJ_RS00645 and MMJJ_RS00650 are separated by 52 nucleotides MMJJ_RS00640: MMJJ_RS00640 - glycine betaine ABC transporter substrate-binding protein, at 123,819 to 124,706 _RS00640 MMJJ_RS00645: MMJJ_RS00645 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 124,879 to 126,282 _RS00645 MMJJ_RS00650: MMJJ_RS00650 - cation:proton antiporter, at 126,335 to 127,501 _RS00650 Position (kb) 124 125 126 127Strain fitness (log2 ratio) -3 -2 -1 0 1at 123.956 kb on - strand, within MMJJ_RS00640at 124.003 kb on + strand, within MMJJ_RS00640at 124.015 kb on - strand, within MMJJ_RS00640at 124.038 kb on + strand, within MMJJ_RS00640at 124.072 kb on - strand, within MMJJ_RS00640at 124.073 kb on + strand, within MMJJ_RS00640at 124.110 kb on - strand, within MMJJ_RS00640at 124.150 kb on - strand, within MMJJ_RS00640at 124.150 kb on - strand, within MMJJ_RS00640at 124.151 kb on + strand, within MMJJ_RS00640at 124.151 kb on + strand, within MMJJ_RS00640at 124.188 kb on + strand, within MMJJ_RS00640at 124.191 kb on - strand, within MMJJ_RS00640at 124.191 kb on - strand, within MMJJ_RS00640at 124.191 kb on - strand, within MMJJ_RS00640at 124.192 kb on + strand, within MMJJ_RS00640at 124.192 kb on + strand, within MMJJ_RS00640at 124.192 kb on + strand, within MMJJ_RS00640at 124.197 kb on - strand, within MMJJ_RS00640at 124.197 kb on - strand, within MMJJ_RS00640at 124.197 kb on - strand, within MMJJ_RS00640at 124.197 kb on - strand, within MMJJ_RS00640at 124.198 kb on + strand, within MMJJ_RS00640at 124.198 kb on + strand, within MMJJ_RS00640at 124.198 kb on + strand, within MMJJ_RS00640at 124.211 kb on + strand, within MMJJ_RS00640at 124.229 kb on + strand, within MMJJ_RS00640at 124.247 kb on + strand, within MMJJ_RS00640at 124.289 kb on - strand, within MMJJ_RS00640at 124.296 kb on + strand, within MMJJ_RS00640at 124.296 kb on + strand, within MMJJ_RS00640at 124.320 kb on - strand, within MMJJ_RS00640at 124.320 kb on - strand, within MMJJ_RS00640at 124.328 kb on + strand, within MMJJ_RS00640at 124.391 kb on - strand, within MMJJ_RS00640at 124.412 kb on + strand, within MMJJ_RS00640at 124.415 kb on - strand, within MMJJ_RS00640at 124.483 kb on - strand, within MMJJ_RS00640at 124.484 kb on + strand, within MMJJ_RS00640at 124.484 kb on + strand, within MMJJ_RS00640at 124.504 kb on - strand, within MMJJ_RS00640at 124.504 kb on - strand, within MMJJ_RS00640at 124.505 kb on + strand, within MMJJ_RS00640at 124.505 kb on + strand, within MMJJ_RS00640at 124.505 kb on + strand, within MMJJ_RS00640at 124.506 kb on - strand, within MMJJ_RS00640at 124.506 kb on - strand, within MMJJ_RS00640at 124.507 kb on + strand, within MMJJ_RS00640at 124.511 kb on - strand, within MMJJ_RS00640at 124.511 kb on - strand, within MMJJ_RS00640at 124.512 kb on + strandat 124.551 kb on - strand, within MMJJ_RS00640at 124.577 kb on + strand, within MMJJ_RS00640at 124.605 kb on - strand, within MMJJ_RS00640at 124.605 kb on - strand, within MMJJ_RS00640at 124.605 kb on - strand, within MMJJ_RS00640at 124.605 kb on - strand, within MMJJ_RS00640at 124.605 kb on - strand, within MMJJ_RS00640at 124.606 kb on + strand, within MMJJ_RS00640at 124.611 kb on - strand, within MMJJ_RS00640at 124.612 kb on + strand, within MMJJ_RS00640at 124.612 kb on + strand, within MMJJ_RS00640at 124.715 kb on - strandat 124.717 kb on - strandat 124.717 kb on - strandat 124.759 kb on + strandat 124.791 kb on - strandat 124.793 kb on - strandat 124.793 kb on - strandat 124.793 kb on - strandat 124.794 kb on + strandat 124.809 kb on + strandat 124.820 kb on + strandat 124.820 kb on + strandat 124.823 kb on + strandat 124.924 kb on + strandat 124.963 kb on - strandat 125.013 kb on + strandat 125.035 kb on - strand, within MMJJ_RS00645at 125.125 kb on + strand, within MMJJ_RS00645at 125.284 kb on + strand, within MMJJ_RS00645at 125.408 kb on - strand, within MMJJ_RS00645at 125.409 kb on + strand, within MMJJ_RS00645at 125.444 kb on + strand, within MMJJ_RS00645at 125.451 kb on - strand, within MMJJ_RS00645at 125.598 kb on - strand, within MMJJ_RS00645at 125.598 kb on - strand, within MMJJ_RS00645at 125.599 kb on + strand, within MMJJ_RS00645at 125.614 kb on + strand, within MMJJ_RS00645at 125.659 kb on + strand, within MMJJ_RS00645at 125.661 kb on - strand, within MMJJ_RS00645at 125.662 kb on + strand, within MMJJ_RS00645at 125.662 kb on + strand, within MMJJ_RS00645at 125.663 kb on - strand, within MMJJ_RS00645at 125.667 kb on + strand, within MMJJ_RS00645at 125.667 kb on + strand, within MMJJ_RS00645at 125.669 kb on - strand, within MMJJ_RS00645at 125.670 kb on + strand, within MMJJ_RS00645at 125.670 kb on + strand, within MMJJ_RS00645at 125.670 kb on + strand, within MMJJ_RS00645at 125.714 kb on + strand, within MMJJ_RS00645at 125.733 kb on + strand, within MMJJ_RS00645at 125.804 kb on - strand, within MMJJ_RS00645at 125.805 kb on + strand, within MMJJ_RS00645at 125.826 kb on + strand, within MMJJ_RS00645at 125.860 kb on + strand, within MMJJ_RS00645at 125.860 kb on + strand, within MMJJ_RS00645at 125.884 kb on - strand, within MMJJ_RS00645at 125.885 kb on + strand, within MMJJ_RS00645at 125.901 kb on + strand, within MMJJ_RS00645at 125.903 kb on - strand, within MMJJ_RS00645at 125.903 kb on - strand, within MMJJ_RS00645at 125.904 kb on + strand, within MMJJ_RS00645at 125.963 kb on - strand, within MMJJ_RS00645at 125.981 kb on - strand, within MMJJ_RS00645at 126.046 kb on - strand, within MMJJ_RS00645at 126.076 kb on + strand, within MMJJ_RS00645at 126.197 kb on - strandat 126.281 kb on + strandat 126.281 kb on + strandat 126.331 kb on - strandat 126.332 kb on + strandat 126.332 kb on + strandat 126.333 kb on - strandat 126.337 kb on + strandat 126.353 kb on - strandat 126.370 kb on - strandat 126.370 kb on - strandat 126.370 kb on - strandat 126.370 kb on - strandat 126.371 kb on + strandat 126.386 kb on + strandat 126.393 kb on + strandat 126.524 kb on + strand, within MMJJ_RS00650at 126.542 kb on - strand, within MMJJ_RS00650at 126.574 kb on - strand, within MMJJ_RS00650at 126.587 kb on - strand, within MMJJ_RS00650at 126.588 kb on + strand, within MMJJ_RS00650at 126.593 kb on - strand, within MMJJ_RS00650at 126.594 kb on + strand, within MMJJ_RS00650at 126.615 kb on + strand, within MMJJ_RS00650at 126.641 kb on - strand, within MMJJ_RS00650at 126.663 kb on - strand, within MMJJ_RS00650at 126.663 kb on - strand, within MMJJ_RS00650at 126.663 kb on - strand, within MMJJ_RS00650at 126.663 kb on - strand, within MMJJ_RS00650at 126.663 kb on - strand, within MMJJ_RS00650at 126.684 kb on + strand, within MMJJ_RS00650at 126.835 kb on - strand, within MMJJ_RS00650at 126.836 kb on + strand, within MMJJ_RS00650at 127.002 kb on + strand, within MMJJ_RS00650at 127.115 kb on - strand, within MMJJ_RS00650at 127.130 kb on + strand, within MMJJ_RS00650at 127.141 kb on - strand, within MMJJ_RS00650at 127.155 kb on - strand, within MMJJ_RS00650at 127.155 kb on - strand, within MMJJ_RS00650at 127.156 kb on + strand, within MMJJ_RS00650at 127.169 kb on + strand, within MMJJ_RS00650at 127.215 kb on + strand, within MMJJ_RS00650at 127.215 kb on + strand, within MMJJ_RS00650at 127.247 kb on - strand, within MMJJ_RS00650at 127.248 kb on + strand, within MMJJ_RS00650at 127.248 kb on + strand, within MMJJ_RS00650at 127.248 kb on + strand, within MMJJ_RS00650at 127.248 kb on + strand, within MMJJ_RS00650at 127.254 kb on + strand, within MMJJ_RS00650

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction formate N-free with 10mM Ammonium chloride
remove
123,956 - MMJJ_RS00640 0.15 -0.1
124,003 + MMJJ_RS00640 0.21 -0.2
124,015 - MMJJ_RS00640 0.22 -0.7
124,038 + MMJJ_RS00640 0.25 +0.4
124,072 - MMJJ_RS00640 0.28 +0.5
124,073 + MMJJ_RS00640 0.29 -0.1
124,110 - MMJJ_RS00640 0.33 -0.3
124,150 - MMJJ_RS00640 0.37 +0.8
124,150 - MMJJ_RS00640 0.37 +0.0
124,151 + MMJJ_RS00640 0.37 +0.9
124,151 + MMJJ_RS00640 0.37 -0.1
124,188 + MMJJ_RS00640 0.42 +0.4
124,191 - MMJJ_RS00640 0.42 +0.9
124,191 - MMJJ_RS00640 0.42 +1.3
124,191 - MMJJ_RS00640 0.42 -0.1
124,192 + MMJJ_RS00640 0.42 +0.3
124,192 + MMJJ_RS00640 0.42 -0.4
124,192 + MMJJ_RS00640 0.42 -0.4
124,197 - MMJJ_RS00640 0.43 +0.1
124,197 - MMJJ_RS00640 0.43 +1.3
124,197 - MMJJ_RS00640 0.43 +0.5
124,197 - MMJJ_RS00640 0.43 -0.5
124,198 + MMJJ_RS00640 0.43 -0.1
124,198 + MMJJ_RS00640 0.43 +0.7
124,198 + MMJJ_RS00640 0.43 +0.5
124,211 + MMJJ_RS00640 0.44 +0.3
124,229 + MMJJ_RS00640 0.46 +0.6
124,247 + MMJJ_RS00640 0.48 -3.3
124,289 - MMJJ_RS00640 0.53 +0.6
124,296 + MMJJ_RS00640 0.54 +0.5
124,296 + MMJJ_RS00640 0.54 +0.4
124,320 - MMJJ_RS00640 0.56 -0.4
124,320 - MMJJ_RS00640 0.56 +0.2
124,328 + MMJJ_RS00640 0.57 +0.2
124,391 - MMJJ_RS00640 0.64 +0.5
124,412 + MMJJ_RS00640 0.67 -0.2
124,415 - MMJJ_RS00640 0.67 -0.7
124,483 - MMJJ_RS00640 0.75 -1.3
124,484 + MMJJ_RS00640 0.75 +0.2
124,484 + MMJJ_RS00640 0.75 -0.2
124,504 - MMJJ_RS00640 0.77 -0.4
124,504 - MMJJ_RS00640 0.77 -0.0
124,505 + MMJJ_RS00640 0.77 -1.4
124,505 + MMJJ_RS00640 0.77 +0.4
124,505 + MMJJ_RS00640 0.77 -0.4
124,506 - MMJJ_RS00640 0.77 +0.8
124,506 - MMJJ_RS00640 0.77 +1.1
124,507 + MMJJ_RS00640 0.77 -0.4
124,511 - MMJJ_RS00640 0.78 +0.4
124,511 - MMJJ_RS00640 0.78 +1.4
124,512 + -0.7
124,551 - MMJJ_RS00640 0.82 +0.7
124,577 + MMJJ_RS00640 0.85 -0.5
124,605 - MMJJ_RS00640 0.89 +0.1
124,605 - MMJJ_RS00640 0.89 -1.7
124,605 - MMJJ_RS00640 0.89 -0.1
124,605 - MMJJ_RS00640 0.89 +0.5
124,605 - MMJJ_RS00640 0.89 +0.1
124,606 + MMJJ_RS00640 0.89 +0.4
124,611 - MMJJ_RS00640 0.89 +0.2
124,612 + MMJJ_RS00640 0.89 +1.3
124,612 + MMJJ_RS00640 0.89 +0.5
124,715 - +0.1
124,717 - -0.2
124,717 - +0.0
124,759 + +0.8
124,791 - -0.2
124,793 - -0.8
124,793 - -0.8
124,793 - -0.4
124,794 + +0.4
124,809 + +0.1
124,820 + +0.1
124,820 + +0.1
124,823 + +0.6
124,924 + -1.3
124,963 - -1.6
125,013 + -1.7
125,035 - MMJJ_RS00645 0.11 -0.8
125,125 + MMJJ_RS00645 0.18 -1.6
125,284 + MMJJ_RS00645 0.29 -1.4
125,408 - MMJJ_RS00645 0.38 -1.4
125,409 + MMJJ_RS00645 0.38 -2.7
125,444 + MMJJ_RS00645 0.40 -1.4
125,451 - MMJJ_RS00645 0.41 -2.1
125,598 - MMJJ_RS00645 0.51 -0.7
125,598 - MMJJ_RS00645 0.51 -2.4
125,599 + MMJJ_RS00645 0.51 -1.0
125,614 + MMJJ_RS00645 0.52 -3.1
125,659 + MMJJ_RS00645 0.56 -1.1
125,661 - MMJJ_RS00645 0.56 -2.0
125,662 + MMJJ_RS00645 0.56 -1.6
125,662 + MMJJ_RS00645 0.56 -2.4
125,663 - MMJJ_RS00645 0.56 -1.5
125,667 + MMJJ_RS00645 0.56 -1.7
125,667 + MMJJ_RS00645 0.56 -1.6
125,669 - MMJJ_RS00645 0.56 -0.7
125,670 + MMJJ_RS00645 0.56 -1.7
125,670 + MMJJ_RS00645 0.56 -1.1
125,670 + MMJJ_RS00645 0.56 -1.5
125,714 + MMJJ_RS00645 0.59 -1.6
125,733 + MMJJ_RS00645 0.61 -1.6
125,804 - MMJJ_RS00645 0.66 -1.4
125,805 + MMJJ_RS00645 0.66 -1.2
125,826 + MMJJ_RS00645 0.67 -1.7
125,860 + MMJJ_RS00645 0.70 -0.8
125,860 + MMJJ_RS00645 0.70 -1.9
125,884 - MMJJ_RS00645 0.72 -2.4
125,885 + MMJJ_RS00645 0.72 -1.0
125,901 + MMJJ_RS00645 0.73 -2.4
125,903 - MMJJ_RS00645 0.73 -1.9
125,903 - MMJJ_RS00645 0.73 -0.5
125,904 + MMJJ_RS00645 0.73 -2.6
125,963 - MMJJ_RS00645 0.77 -1.3
125,981 - MMJJ_RS00645 0.78 -0.5
126,046 - MMJJ_RS00645 0.83 -0.8
126,076 + MMJJ_RS00645 0.85 -2.3
126,197 - -2.1
126,281 + -0.2
126,281 + +1.0
126,331 - -1.0
126,332 + +0.3
126,332 + -0.6
126,333 - +0.9
126,337 + -0.0
126,353 - -0.8
126,370 - +0.3
126,370 - -0.7
126,370 - +0.3
126,370 - +0.3
126,371 + -0.4
126,386 + -0.1
126,393 + -0.2
126,524 + MMJJ_RS00650 0.16 +0.3
126,542 - MMJJ_RS00650 0.18 +0.5
126,574 - MMJJ_RS00650 0.20 -0.4
126,587 - MMJJ_RS00650 0.22 +0.3
126,588 + MMJJ_RS00650 0.22 +0.5
126,593 - MMJJ_RS00650 0.22 +0.7
126,594 + MMJJ_RS00650 0.22 -0.2
126,615 + MMJJ_RS00650 0.24 -0.0
126,641 - MMJJ_RS00650 0.26 -0.3
126,663 - MMJJ_RS00650 0.28 -0.8
126,663 - MMJJ_RS00650 0.28 -1.6
126,663 - MMJJ_RS00650 0.28 -0.3
126,663 - MMJJ_RS00650 0.28 +0.5
126,663 - MMJJ_RS00650 0.28 +0.1
126,684 + MMJJ_RS00650 0.30 +0.1
126,835 - MMJJ_RS00650 0.43 +1.7
126,836 + MMJJ_RS00650 0.43 +0.5
127,002 + MMJJ_RS00650 0.57 -0.3
127,115 - MMJJ_RS00650 0.67 +0.4
127,130 + MMJJ_RS00650 0.68 +0.3
127,141 - MMJJ_RS00650 0.69 -0.0
127,155 - MMJJ_RS00650 0.70 +0.6
127,155 - MMJJ_RS00650 0.70 +0.3
127,156 + MMJJ_RS00650 0.70 +0.8
127,169 + MMJJ_RS00650 0.71 +0.2
127,215 + MMJJ_RS00650 0.75 +0.4
127,215 + MMJJ_RS00650 0.75 +0.2
127,247 - MMJJ_RS00650 0.78 +0.2
127,248 + MMJJ_RS00650 0.78 +0.1
127,248 + MMJJ_RS00650 0.78 -0.8
127,248 + MMJJ_RS00650 0.78 -0.3
127,248 + MMJJ_RS00650 0.78 -0.3
127,254 + MMJJ_RS00650 0.79 +0.6

Or see this region's nucleotide sequence