Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00630

Experiment: formate N-free with 10mM Ammonium chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	formate N-free with 10mM Ammonium chloride
120,830	-		MMJJ_RS00625	0.86	+0.4
120,837	+		MMJJ_RS00625	0.86	+0.2
120,837	+		MMJJ_RS00625	0.86	+0.3
120,854	-		MMJJ_RS00625	0.87	-0.1
120,862	-		MMJJ_RS00625	0.88	+0.9
120,862	-		MMJJ_RS00625	0.88	-0.0
120,862	-		MMJJ_RS00625	0.88	-0.2
120,862	-		MMJJ_RS00625	0.88	+0.3
120,862	-		MMJJ_RS00625	0.88	+0.6
120,862	-		MMJJ_RS00625	0.88	-0.2
120,862	-		MMJJ_RS00625	0.88	+1.2
120,863	+		MMJJ_RS00625	0.88	-0.6
120,863	+		MMJJ_RS00625	0.88	+0.0
120,863	+		MMJJ_RS00625	0.88	-0.5
120,863	+		MMJJ_RS00625	0.88	-0.5
120,863	+		MMJJ_RS00625	0.88	-0.1
120,863	+		MMJJ_RS00625	0.88	+0.2
120,864	-		MMJJ_RS00625	0.88	+0.4
120,864	-		MMJJ_RS00625	0.88	-0.3
120,864	-		MMJJ_RS00625	0.88	-0.1
120,864	-		MMJJ_RS00625	0.88	+0.6
120,864	-		MMJJ_RS00625	0.88	-0.4
120,864	-		MMJJ_RS00625	0.88	-0.8
120,865	+		MMJJ_RS00625	0.88	-1.0
120,865	+		MMJJ_RS00625	0.88	+0.6
120,867	+		MMJJ_RS00625	0.88	-0.8
120,867	+		MMJJ_RS00625	0.88	-0.7
120,867	+		MMJJ_RS00625	0.88	-0.2
120,867	+		MMJJ_RS00625	0.88	+0.2
120,867	+		MMJJ_RS00625	0.88	-0.1
120,867	+		MMJJ_RS00625	0.88	-0.6
120,869	-		MMJJ_RS00625	0.88	+0.5
120,869	-		MMJJ_RS00625	0.88	-1.9
120,870	+		MMJJ_RS00625	0.88	+0.3
120,870	+		MMJJ_RS00625	0.88	-0.1
120,889	-		MMJJ_RS00625	0.89	+0.1
120,890	+				+2.9
120,890	+		MMJJ_RS00625	0.89	-0.4
120,903	+		MMJJ_RS00625	0.90	-0.5
120,906	-		MMJJ_RS00625	0.90	+0.6
120,906	-		MMJJ_RS00625	0.90	-0.2
120,906	-		MMJJ_RS00625	0.90	+0.8
120,923	-				+0.0
120,923	-				-0.5
120,924	+				-1.3
120,924	+				+0.3
120,931	+				+0.1
120,931	+				+0.5
120,932	-				-0.1
120,932	-				+0.2
120,932	-				+0.9
120,932	-				-0.9
120,933	+				+0.2
120,933	+				-0.1
120,933	+				-0.1
120,933	+				-2.3
120,933	+				+0.2
120,949	-				-0.2
120,949	-				-1.9
120,950	+				+0.9
120,953	-				-0.4
120,953	-				-0.4
120,954	+				+0.2
120,954	+				+0.8
120,954	+				-0.2
120,957	+				+0.9
120,966	-				+0.3
120,967	+				+0.4
120,967	+				+0.2
120,970	-				+0.7
120,970	-				+0.6
120,973	-				+0.8
120,973	-				-0.8
120,973	-				-0.8
120,973	-				-1.0
120,973	-				+1.3
120,974	+				+0.5
121,123	-				-0.5
121,125	-				+0.5
121,125	-				-0.5
121,125	-				-0.6
121,126	+				+1.1
121,131	-				+0.2
121,134	+				-0.8
121,134	+				+0.3
121,134	+				-0.2
121,134	+				+0.3
121,137	-				-0.4
121,137	-				+0.3
121,143	-				-0.8
121,152	-				+0.2
121,156	-				-0.0
121,156	-				+0.0
121,207	-				-1.6
121,208	+				-1.0
121,210	-				+0.1
121,211	+				+0.8
121,211	+				+0.2
121,211	+				+0.7
121,212	-				-0.4
121,212	-				+0.7
121,212	-				+0.8
121,212	-				+0.1
121,213	+				-0.8
121,213	+				-0.2
121,213	+				+0.0
121,242	+				+0.3
121,281	-				+0.3
121,282	+				-0.8
121,282	+				+0.2
121,336	+				+0.2
121,347	-				-0.4
121,347	-				+0.2
121,347	-				-0.5
121,348	+				+0.2
121,348	+				+0.1
121,362	-				-0.2
121,363	+				-0.2
121,363	+				-0.2
121,367	-				+1.6
121,367	-				+0.6
121,368	+				-0.3
121,368	+				-0.8
121,391	-				-0.8
121,392	+				-0.2
121,482	-				+0.2
121,494	-				-0.5
121,494	-				+0.5
121,494	-				-0.9
121,495	+				+0.9
121,550	-				-0.0
121,552	-				-0.5
121,553	+				-0.2
121,553	+				+1.1
121,592	-				-0.1
121,602	+				+0.4
121,606	+				-0.8
121,614	+				-1.0
121,617	-				+1.1
121,617	-				-0.7
121,618	+				+0.3
121,619	-				+0.5
121,620	+				+0.0
121,622	+				+0.0
121,627	+				+1.2
121,647	+				-0.0
121,655	-				-0.4
121,662	-				-0.3
121,666	+				+0.6
121,706	-				-0.4
121,745	+				+0.1
121,775	+				-0.5
121,785	+				+0.6
121,798	-				-0.1
121,799	+				-0.4
121,799	+				-0.2
121,818	-				-0.8
121,819	+				-0.7
121,819	+				+0.1
121,821	+				-0.2
121,861	+				-0.9
121,864	-				-0.1
121,922	+		MMJJ_RS00630	0.12	+0.6
121,922	+		MMJJ_RS00630	0.12	+0.2
121,962	-		MMJJ_RS00630	0.15	+1.7
121,994	+		MMJJ_RS00630	0.18	+0.0
122,008	-		MMJJ_RS00630	0.19	-0.6
122,008	-		MMJJ_RS00630	0.19	-0.5
122,009	+		MMJJ_RS00630	0.19	+0.3
122,011	-		MMJJ_RS00630	0.19	-0.5
122,012	+		MMJJ_RS00630	0.19	+1.5
122,020	-		MMJJ_RS00630	0.20	+0.0
122,020	-		MMJJ_RS00630	0.20	+0.0
122,043	-		MMJJ_RS00630	0.22	-0.3
122,044	+		MMJJ_RS00630	0.22	+0.4
122,044	+		MMJJ_RS00630	0.22	-0.4
122,145	-		MMJJ_RS00630	0.31	+0.6
122,287	+		MMJJ_RS00630	0.43	+1.1
122,287	+		MMJJ_RS00630	0.43	+1.0
122,334	-		MMJJ_RS00630	0.47	+0.3
122,347	+		MMJJ_RS00630	0.48	+0.8
122,349	-		MMJJ_RS00630	0.48	-0.2
122,448	-		MMJJ_RS00630	0.56	+0.8
122,466	-		MMJJ_RS00630	0.58	-0.4
122,662	-		MMJJ_RS00630	0.75	-0.1
122,720	-		MMJJ_RS00630	0.80	+0.3
122,721	+		MMJJ_RS00630	0.80	+0.3
122,721	+		MMJJ_RS00630	0.80	+0.4
122,721	+		MMJJ_RS00630	0.80	-0.2
122,724	-		MMJJ_RS00630	0.80	-0.2
122,725	+		MMJJ_RS00630	0.80	+1.0
122,801	+		MMJJ_RS00630	0.87	+0.9
122,820	-		MMJJ_RS00630	0.88	-1.2
122,850	-				-0.2
122,851	+				-0.4
122,873	-				+0.7
122,889	-				+0.3
122,889	-				-0.7
122,889	-				+0.4
122,890	+				-0.0
122,915	-				-0.5
122,947	+				+0.1
122,954	-				+0.4
122,978	-				-0.1
122,978	-				-0.3
122,979	+				+0.0
122,979	+				+1.1
123,017	+				+0.6
123,029	+				-0.9
123,039	-				-0.9
123,039	-				-0.1
123,040	+				+0.4
123,067	+		MMJJ_RS00635	0.12	-0.1
123,067	+		MMJJ_RS00635	0.12	+1.0
123,123	-		MMJJ_RS00635	0.18	-0.1
123,149	+		MMJJ_RS00635	0.21	-0.1
123,168	+		MMJJ_RS00635	0.24	+0.2
123,179	-		MMJJ_RS00635	0.25	+0.4
123,187	+		MMJJ_RS00635	0.26	-1.3
123,187	+		MMJJ_RS00635	0.26	+0.4
123,202	-		MMJJ_RS00635	0.28	-1.4
123,203	+		MMJJ_RS00635	0.28	-0.4
123,203	+		MMJJ_RS00635	0.28	+0.0
123,206	-		MMJJ_RS00635	0.28	-0.1
123,206	-		MMJJ_RS00635	0.28	-0.7
123,207	+		MMJJ_RS00635	0.28	-0.3
123,233	-		MMJJ_RS00635	0.32	+0.3
123,286	-		MMJJ_RS00635	0.38	+0.0
123,286	-		MMJJ_RS00635	0.38	+1.0
123,287	+		MMJJ_RS00635	0.38	+0.4
123,331	-		MMJJ_RS00635	0.43	+0.5
123,332	+		MMJJ_RS00635	0.43	-0.2
123,332	+		MMJJ_RS00635	0.43	+0.3
123,335	-		MMJJ_RS00635	0.44	+0.4
123,336	+		MMJJ_RS00635	0.44	+0.4
123,361	-		MMJJ_RS00635	0.47	+0.5
123,362	+		MMJJ_RS00635	0.47	+0.3
123,387	-		MMJJ_RS00635	0.50	-0.4
123,388	+		MMJJ_RS00635	0.50	-0.5
123,388	+		MMJJ_RS00635	0.50	-0.0
123,437	-		MMJJ_RS00635	0.56	+0.2
123,506	-		MMJJ_RS00635	0.64	-0.1
123,515	+		MMJJ_RS00635	0.65	-0.0
123,542	-		MMJJ_RS00635	0.69	+0.4
123,557	+		MMJJ_RS00635	0.70	+0.3
123,557	+		MMJJ_RS00635	0.70	+0.7
123,569	+		MMJJ_RS00635	0.72	+0.1
123,608	+		MMJJ_RS00635	0.76	+0.5
123,640	-		MMJJ_RS00635	0.80	+0.2
123,640	-		MMJJ_RS00635	0.80	+0.5
123,640	-		MMJJ_RS00635	0.80	+0.4
123,641	+		MMJJ_RS00635	0.80	+0.2
123,641	+		MMJJ_RS00635	0.80	+0.4
123,645	+		MMJJ_RS00635	0.81	-0.5
123,674	+		MMJJ_RS00635	0.84	+0.3
123,683	-		MMJJ_RS00635	0.85	+1.1
123,685	-		MMJJ_RS00635	0.86	-1.1
123,708	+		MMJJ_RS00635	0.88	-0.2
123,835	-				-0.7
123,835	-				+0.0
123,956	-		MMJJ_RS00640	0.15	-0.1