Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00035

Experiment: formate N-free with 10mM Ammonium chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	formate N-free with 10mM Ammonium chloride
5,418	+				+0.5
5,433	+				-0.4
5,491	-		MMJJ_RS00030	0.13	-0.4
5,513	+		MMJJ_RS00030	0.16	-0.8
5,572	+		MMJJ_RS00030	0.23	+0.4
5,574	-		MMJJ_RS00030	0.23	+0.8
5,582	-		MMJJ_RS00030	0.24	+0.2
5,582	-		MMJJ_RS00030	0.24	+0.0
5,583	+		MMJJ_RS00030	0.24	-0.5
5,583	+		MMJJ_RS00030	0.24	-0.3
5,585	-		MMJJ_RS00030	0.24	-0.2
5,585	-		MMJJ_RS00030	0.24	+0.1
5,585	-		MMJJ_RS00030	0.24	-0.1
5,586	+		MMJJ_RS00030	0.24	-0.0
5,586	+		MMJJ_RS00030	0.24	-0.2
5,593	+		MMJJ_RS00030	0.25	-0.4
5,625	-		MMJJ_RS00030	0.29	-0.5
5,652	-		MMJJ_RS00030	0.32	+0.2
5,697	+		MMJJ_RS00030	0.37	-0.3
5,745	-		MMJJ_RS00030	0.42	+0.1
5,745	-		MMJJ_RS00030	0.42	+0.1
5,749	-		MMJJ_RS00030	0.43	+0.2
5,749	-		MMJJ_RS00030	0.43	+0.3
5,749	-		MMJJ_RS00030	0.43	+0.1
5,750	+		MMJJ_RS00030	0.43	+1.5
5,750	+		MMJJ_RS00030	0.43	+0.4
5,796	-		MMJJ_RS00030	0.48	+0.6
5,808	-		MMJJ_RS00030	0.50	+0.2
5,809	+		MMJJ_RS00030	0.50	-0.7
5,809	+		MMJJ_RS00030	0.50	-0.1
5,814	-		MMJJ_RS00030	0.50	-0.5
5,828	-		MMJJ_RS00030	0.52	+0.7
5,828	-		MMJJ_RS00030	0.52	+0.6
5,829	+		MMJJ_RS00030	0.52	+0.3
5,860	-		MMJJ_RS00030	0.55	-0.9
5,860	-		MMJJ_RS00030	0.55	+0.7
5,860	-		MMJJ_RS00030	0.55	-0.3
6,005	-		MMJJ_RS00030	0.72	-0.9
6,057	+		MMJJ_RS00030	0.78	-0.4
6,061	+		MMJJ_RS00030	0.78	+0.7
6,105	+		MMJJ_RS00030	0.83	+0.2
6,117	-		MMJJ_RS00030	0.85	+0.3
6,158	-		MMJJ_RS00030	0.89	-0.9
6,158	-		MMJJ_RS00030	0.89	+0.0
6,159	+		MMJJ_RS00030	0.90	+0.5
6,165	+				-0.7
6,205	+				-0.8
6,205	+				+0.5
6,205	+				+0.6
6,206	-				-0.6
6,206	-				+0.0
6,206	-				-0.4
6,206	-				+0.2
6,207	+				-0.8
6,207	+				+0.5
6,246	+				+0.9
6,259	+				-0.6
6,265	+				+1.2
6,268	-				+0.3
6,325	+				-0.1
6,335	+				+0.1
6,365	-				-0.5
6,365	-				-0.8
6,365	-				-1.8
6,365	-				-1.5
6,366	+				-0.7
6,366	+				-1.7
6,366	+				-1.4
6,366	+				-4.1
6,366	+				-3.2
6,367	-				-2.0
6,368	+				+0.4
6,369	-				-1.8
6,370	+				-3.2
6,371	-				-2.6
6,371	-				-1.0
6,372	+				-1.5
6,372	+				-1.2
6,372	+				-1.3
6,372	+				-3.0
6,423	-				-2.2
6,466	+				-2.8
6,591	+				-1.5
6,627	-				-1.6
6,627	-				-2.0
6,639	+				-2.8
6,642	-				-2.5
6,642	-				-1.2
6,643	+				-2.0
6,643	+				+0.9
6,643	+				-2.8
6,662	-		MMJJ_RS00035	0.11	-1.2
6,785	-		MMJJ_RS00035	0.16	-1.5
6,786	+		MMJJ_RS00035	0.16	-2.4
6,815	-		MMJJ_RS00035	0.17	-2.5
6,815	-		MMJJ_RS00035	0.17	-1.8
6,815	-		MMJJ_RS00035	0.17	-3.5
6,815	-		MMJJ_RS00035	0.17	-2.1
6,816	+		MMJJ_RS00035	0.17	-1.9
6,819	-				-1.1
6,819	-		MMJJ_RS00035	0.17	-3.5
6,839	-		MMJJ_RS00035	0.18	-1.9
6,839	-		MMJJ_RS00035	0.18	-2.7
6,839	-		MMJJ_RS00035	0.18	-2.0
6,882	+		MMJJ_RS00035	0.20	-1.8
6,991	+		MMJJ_RS00035	0.25	-1.8
7,034	-		MMJJ_RS00035	0.27	-2.3
7,035	+		MMJJ_RS00035	0.27	-2.3
7,044	-		MMJJ_RS00035	0.27	-3.1
7,060	-		MMJJ_RS00035	0.28	-1.2
7,097	-		MMJJ_RS00035	0.29	-1.7
7,118	-		MMJJ_RS00035	0.30	-2.8
7,118	-		MMJJ_RS00035	0.30	-1.7
7,122	-		MMJJ_RS00035	0.30	-2.5
7,146	-		MMJJ_RS00035	0.31	-3.0
7,160	-		MMJJ_RS00035	0.32	-1.6
7,240	+				-0.7
7,248	+		MMJJ_RS00035	0.36	-3.3
7,251	-		MMJJ_RS00035	0.36	-4.0
7,251	-		MMJJ_RS00035	0.36	-2.7
7,251	-		MMJJ_RS00035	0.36	-2.1
7,252	+		MMJJ_RS00035	0.36	-3.0
7,252	+		MMJJ_RS00035	0.36	+0.2
7,252	+		MMJJ_RS00035	0.36	-1.2
7,252	+		MMJJ_RS00035	0.36	-1.4
7,253	-		MMJJ_RS00035	0.36	-0.8
7,253	-		MMJJ_RS00035	0.36	-3.0
7,254	+		MMJJ_RS00035	0.36	-1.3
7,360	+		MMJJ_RS00035	0.41	-1.5
7,384	+		MMJJ_RS00035	0.42	-2.6
7,509	-		MMJJ_RS00035	0.47	-1.6
7,599	-		MMJJ_RS00035	0.51	-1.7
7,600	+		MMJJ_RS00035	0.51	-0.4
7,632	-		MMJJ_RS00035	0.52	-2.3
7,677	-		MMJJ_RS00035	0.54	-1.4
7,677	-		MMJJ_RS00035	0.54	+0.1
7,677	-		MMJJ_RS00035	0.54	-1.0
7,678	+		MMJJ_RS00035	0.54	-3.9
7,735	-		MMJJ_RS00035	0.57	-1.9
7,746	-		MMJJ_RS00035	0.57	-3.4
7,747	+		MMJJ_RS00035	0.57	-1.3
7,753	-		MMJJ_RS00035	0.57	-3.7
7,800	+		MMJJ_RS00035	0.59	-2.6
7,937	-		MMJJ_RS00035	0.65	-1.5
8,066	+		MMJJ_RS00035	0.71	-2.2
8,066	+		MMJJ_RS00035	0.71	-3.3
8,066	+		MMJJ_RS00035	0.71	-2.5
8,066	+		MMJJ_RS00035	0.71	-1.8
8,093	+		MMJJ_RS00035	0.72	-2.5
8,101	-		MMJJ_RS00035	0.72	-1.2
8,136	-		MMJJ_RS00035	0.74	-0.8
8,137	+		MMJJ_RS00035	0.74	-0.8
8,164	+		MMJJ_RS00035	0.75	-3.0
8,164	+		MMJJ_RS00035	0.75	-2.9
8,164	+		MMJJ_RS00035	0.75	-2.3
8,179	+		MMJJ_RS00035	0.76	-3.8
8,242	-		MMJJ_RS00035	0.78	-3.0
8,242	-		MMJJ_RS00035	0.78	-2.6
8,242	-		MMJJ_RS00035	0.78	-2.0
8,243	+		MMJJ_RS00035	0.78	-2.4
8,243	+		MMJJ_RS00035	0.78	-3.5
8,244	-		MMJJ_RS00035	0.78	-1.7
8,245	+		MMJJ_RS00035	0.78	-3.9
8,245	+		MMJJ_RS00035	0.78	-1.4
8,249	-		MMJJ_RS00035	0.79	-1.8
8,250	+		MMJJ_RS00035	0.79	-3.4
8,335	+		MMJJ_RS00035	0.82	-0.3
8,380	-		MMJJ_RS00035	0.84	-2.1
8,380	-		MMJJ_RS00035	0.84	-0.8
8,426	-		MMJJ_RS00035	0.86	-2.3
8,507	-		MMJJ_RS00035	0.90	-2.4
8,507	-		MMJJ_RS00035	0.90	-2.8
8,508	+		MMJJ_RS00035	0.90	-3.2
8,528	-				-1.2
8,547	-				-0.7
8,562	+				-3.3
8,579	-				-3.5
8,579	-				-2.2
8,579	-				-2.3
8,580	+				-1.5
8,585	-				-2.4
8,596	-				-1.8
8,622	+				-2.6
8,627	-				-2.3
8,628	+				-2.3
8,749	-				-2.8
8,772	-				-1.3
8,773	+				-4.0
8,799	+				-2.6
8,799	+				-2.8
8,829	+		MMJJ_RS00040	0.13	-2.8
8,897	-		MMJJ_RS00040	0.26	-3.0
8,954	-		MMJJ_RS00040	0.37	-2.3
8,955	+		MMJJ_RS00040	0.37	-2.0
9,038	-		MMJJ_RS00040	0.53	-2.1
9,039	+		MMJJ_RS00040	0.54	-2.1
9,118	-		MMJJ_RS00040	0.69	-1.5
9,118	-		MMJJ_RS00040	0.69	-1.9
9,118	-		MMJJ_RS00040	0.69	-1.1
9,119	+		MMJJ_RS00040	0.69	-5.4
9,119	+		MMJJ_RS00040	0.69	-1.9
9,121	-		MMJJ_RS00040	0.69	-3.5
9,122	+		MMJJ_RS00040	0.70	+0.3
9,122	+		MMJJ_RS00040	0.70	-2.3
9,122	+		MMJJ_RS00040	0.70	-1.7
9,194	+		MMJJ_RS00040	0.83	-3.4
9,194	+		MMJJ_RS00040	0.83	-1.5
9,228	-				-2.5
9,228	-				-1.3
9,229	+				-4.5
9,229	+				-2.0
9,229	+				-3.4
9,229	+				-2.6
9,229	+				-2.3
9,253	-				-2.7
9,304	-				-2.8
9,305	+				-2.3
9,316	-				-1.5
9,317	+				-1.5
9,327	-				-1.9
9,327	-				-2.0
9,328	+				-1.6
9,407	+				-3.5
9,422	+				-3.7
9,545	+		MMJJ_RS00045	0.18	-2.8
9,576	-		MMJJ_RS00045	0.21	-2.1
9,576	-		MMJJ_RS00045	0.21	-2.5
9,576	-		MMJJ_RS00045	0.21	-1.7
9,591	+		MMJJ_RS00045	0.22	-1.5
9,598	-		MMJJ_RS00045	0.22	+1.3
9,599	+		MMJJ_RS00045	0.22	-2.2
9,599	+		MMJJ_RS00045	0.22	-3.4
9,661	-		MMJJ_RS00045	0.27	-1.6
9,736	-		MMJJ_RS00045	0.32	+0.0
9,736	-		MMJJ_RS00045	0.32	-1.0