Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0825 and Ga0059261_0826 are separated by 152 nucleotides Ga0059261_0826 and Ga0059261_0827 are separated by 217 nucleotides Ga0059261_0827 and Ga0059261_0828 are separated by 60 nucleotides
Ga0059261_0825: Ga0059261_0825 - Uncharacterized conserved protein, at 865,829 to 866,155
_0825
Ga0059261_0826: Ga0059261_0826 - Uncharacterized protein conserved in bacteria, at 866,308 to 866,547
_0826
Ga0059261_0827: Ga0059261_0827 - hypothetical protein, at 866,765 to 867,160
_0827
Ga0059261_0828: Ga0059261_0828 - Peptidase family S41, at 867,221 to 868,315
_0828
Position (kb) 866
867
868 Strain fitness (log2 ratio) -2
-1
0
1 at 865.788 kb on + strand at 865.803 kb on + strand at 865.803 kb on + strand at 865.804 kb on - strand at 865.822 kb on + strand at 865.822 kb on + strand at 865.823 kb on - strand at 865.823 kb on - strand at 865.823 kb on - strand at 865.905 kb on + strand, within Ga0059261_0825 at 866.007 kb on + strand, within Ga0059261_0825 at 866.007 kb on + strand, within Ga0059261_0825 at 866.007 kb on + strand, within Ga0059261_0825 at 866.007 kb on + strand, within Ga0059261_0825 at 866.007 kb on + strand, within Ga0059261_0825 at 866.008 kb on - strand, within Ga0059261_0825 at 866.008 kb on - strand, within Ga0059261_0825 at 866.106 kb on + strand, within Ga0059261_0825 at 866.157 kb on + strand at 866.226 kb on + strand at 866.226 kb on + strand at 866.227 kb on - strand at 866.227 kb on - strand at 866.309 kb on + strand at 866.309 kb on + strand at 866.309 kb on + strand at 866.309 kb on + strand at 866.309 kb on + strand at 866.309 kb on + strand at 866.309 kb on + strand at 866.309 kb on + strand at 866.310 kb on - strand at 866.310 kb on - strand at 866.310 kb on - strand at 866.310 kb on - strand at 866.310 kb on - strand at 866.310 kb on - strand at 866.563 kb on - strand at 866.563 kb on - strand at 866.642 kb on + strand at 866.668 kb on + strand at 866.681 kb on + strand at 866.682 kb on - strand at 866.682 kb on - strand at 866.693 kb on - strand at 866.693 kb on - strand at 866.693 kb on - strand at 866.693 kb on - strand at 866.872 kb on + strand, within Ga0059261_0827 at 866.873 kb on - strand, within Ga0059261_0827 at 867.060 kb on - strand, within Ga0059261_0827 at 867.152 kb on + strand at 867.152 kb on + strand at 867.152 kb on + strand at 867.152 kb on + strand at 867.153 kb on - strand at 867.195 kb on - strand at 867.256 kb on + strand at 867.256 kb on + strand at 867.256 kb on + strand at 867.256 kb on + strand at 867.256 kb on + strand at 867.256 kb on + strand at 867.257 kb on - strand at 867.257 kb on - strand at 867.257 kb on - strand at 867.258 kb on + strand at 867.258 kb on + strand at 867.258 kb on + strand at 867.258 kb on + strand at 867.258 kb on + strand at 867.258 kb on + strand at 867.258 kb on + strand at 867.258 kb on + strand at 867.258 kb on + strand at 867.259 kb on - strand at 867.259 kb on - strand at 867.259 kb on - strand at 867.259 kb on - strand at 867.259 kb on - strand at 867.259 kb on - strand at 867.259 kb on - strand at 867.259 kb on - strand at 867.259 kb on - strand at 867.259 kb on - strand at 867.259 kb on - strand at 867.259 kb on - strand at 867.259 kb on - strand at 867.259 kb on - strand at 867.393 kb on + strand, within Ga0059261_0828 at 867.393 kb on + strand, within Ga0059261_0828 at 867.393 kb on + strand, within Ga0059261_0828 at 867.394 kb on - strand, within Ga0059261_0828 at 867.394 kb on - strand, within Ga0059261_0828 at 867.394 kb on - strand, within Ga0059261_0828 at 867.394 kb on - strand, within Ga0059261_0828 at 867.394 kb on - strand at 867.424 kb on - strand, within Ga0059261_0828 at 867.561 kb on + strand, within Ga0059261_0828 at 867.561 kb on + strand at 867.562 kb on - strand, within Ga0059261_0828 at 867.562 kb on - strand, within Ga0059261_0828 at 867.562 kb on - strand, within Ga0059261_0828 at 867.564 kb on + strand, within Ga0059261_0828 at 867.564 kb on + strand, within Ga0059261_0828 at 867.564 kb on + strand, within Ga0059261_0828 at 867.564 kb on + strand, within Ga0059261_0828 at 867.564 kb on + strand, within Ga0059261_0828 at 867.564 kb on + strand, within Ga0059261_0828 at 867.564 kb on + strand, within Ga0059261_0828 at 867.564 kb on + strand, within Ga0059261_0828 at 867.564 kb on + strand, within Ga0059261_0828 at 867.564 kb on + strand, within Ga0059261_0828 at 867.564 kb on + strand, within Ga0059261_0828 at 867.565 kb on - strand, within Ga0059261_0828 at 867.565 kb on - strand, within Ga0059261_0828 at 867.873 kb on + strand, within Ga0059261_0828 at 867.873 kb on + strand, within Ga0059261_0828 at 867.873 kb on + strand, within Ga0059261_0828 at 867.874 kb on - strand, within Ga0059261_0828 at 867.950 kb on + strand, within Ga0059261_0828 at 867.951 kb on - strand, within Ga0059261_0828 at 868.093 kb on - strand, within Ga0059261_0828 at 868.093 kb on - strand, within Ga0059261_0828 at 868.132 kb on - strand, within Ga0059261_0828 at 868.132 kb on - strand, within Ga0059261_0828 at 868.132 kb on - strand, within Ga0059261_0828
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 865,788 + +0.7 865,803 + -0.9 865,803 + +0.5 865,804 - -0.1 865,822 + -0.4 865,822 + +0.5 865,823 - +0.1 865,823 - +0.5 865,823 - -1.4 865,905 + Ga0059261_0825 0.23 +0.6 866,007 + Ga0059261_0825 0.54 -1.9 866,007 + Ga0059261_0825 0.54 -0.3 866,007 + Ga0059261_0825 0.54 -2.6 866,007 + Ga0059261_0825 0.54 +0.0 866,007 + Ga0059261_0825 0.54 -0.8 866,008 - Ga0059261_0825 0.55 +0.5 866,008 - Ga0059261_0825 0.55 +0.5 866,106 + Ga0059261_0825 0.85 +0.0 866,157 + -0.3 866,226 + +0.1 866,226 + -2.3 866,227 - -0.3 866,227 - +0.0 866,309 + +0.3 866,309 + -0.3 866,309 + -0.3 866,309 + +0.8 866,309 + -0.4 866,309 + -0.3 866,309 + -0.2 866,309 + -0.5 866,310 - +0.9 866,310 - -0.1 866,310 - +0.0 866,310 - -1.3 866,310 - -0.9 866,310 - +0.9 866,563 - -2.3 866,563 - +0.4 866,642 + +1.2 866,668 + -0.2 866,681 + +0.1 866,682 - -0.4 866,682 - -0.4 866,693 - +0.6 866,693 - +0.0 866,693 - +0.2 866,693 - -0.3 866,872 + Ga0059261_0827 0.27 -0.4 866,873 - Ga0059261_0827 0.27 -0.9 867,060 - Ga0059261_0827 0.74 -0.5 867,152 + -0.6 867,152 + -1.4 867,152 + +0.0 867,152 + +0.5 867,153 - -0.0 867,195 - -0.4 867,256 + +0.1 867,256 + +0.4 867,256 + +0.4 867,256 + +0.2 867,256 + +1.1 867,256 + +0.4 867,257 - +0.7 867,257 - +0.3 867,257 - +0.1 867,258 + +0.1 867,258 + -0.4 867,258 + -0.4 867,258 + -0.0 867,258 + +0.7 867,258 + +0.8 867,258 + -0.1 867,258 + +1.3 867,258 + +0.3 867,259 - -0.4 867,259 - +0.1 867,259 - -0.2 867,259 - -0.4 867,259 - +0.1 867,259 - +0.5 867,259 - -0.9 867,259 - -0.7 867,259 - -0.4 867,259 - -0.4 867,259 - +0.3 867,259 - -0.1 867,259 - -0.0 867,259 - +0.2 867,393 + Ga0059261_0828 0.16 -0.8 867,393 + Ga0059261_0828 0.16 +0.3 867,393 + Ga0059261_0828 0.16 +0.3 867,394 - Ga0059261_0828 0.16 -0.1 867,394 - Ga0059261_0828 0.16 +0.3 867,394 - Ga0059261_0828 0.16 -0.4 867,394 - Ga0059261_0828 0.16 +0.1 867,394 - +0.1 867,424 - Ga0059261_0828 0.19 +0.5 867,561 + Ga0059261_0828 0.31 -0.3 867,561 + +0.9 867,562 - Ga0059261_0828 0.31 -0.2 867,562 - Ga0059261_0828 0.31 -0.5 867,562 - Ga0059261_0828 0.31 +0.5 867,564 + Ga0059261_0828 0.31 -0.5 867,564 + Ga0059261_0828 0.31 -0.4 867,564 + Ga0059261_0828 0.31 -1.0 867,564 + Ga0059261_0828 0.31 -0.7 867,564 + Ga0059261_0828 0.31 +0.5 867,564 + Ga0059261_0828 0.31 -0.4 867,564 + Ga0059261_0828 0.31 +0.1 867,564 + Ga0059261_0828 0.31 +0.0 867,564 + Ga0059261_0828 0.31 +0.5 867,564 + Ga0059261_0828 0.31 -0.5 867,564 + Ga0059261_0828 0.31 +0.1 867,565 - Ga0059261_0828 0.31 -0.3 867,565 - Ga0059261_0828 0.31 -0.0 867,873 + Ga0059261_0828 0.60 +0.2 867,873 + Ga0059261_0828 0.60 +0.0 867,873 + Ga0059261_0828 0.60 -0.6 867,874 - Ga0059261_0828 0.60 -1.3 867,950 + Ga0059261_0828 0.67 -0.3 867,951 - Ga0059261_0828 0.67 +0.1 868,093 - Ga0059261_0828 0.80 -0.5 868,093 - Ga0059261_0828 0.80 +0.1 868,132 - Ga0059261_0828 0.83 -0.1 868,132 - Ga0059261_0828 0.83 +0.3 868,132 - Ga0059261_0828 0.83 +0.6
Or see this region's nucleotide sequence