Experiment: nitrate 45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4536 and Ac3H11_4537 are separated by 39 nucleotides Ac3H11_4537 and Ac3H11_4538 overlap by 4 nucleotides Ac3H11_4538 and Ac3H11_4539 overlap by 4 nucleotides Ac3H11_4539 and Ac3H11_4540 are separated by 1 nucleotides
Ac3H11_4536 - putative membrane protein, at 131,025 to 132,224
_4536
Ac3H11_4537 - Arsenate reductase (EC 1.20.4.1), at 132,264 to 132,686
_4537
Ac3H11_4538 - ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8), at 132,683 to 133,297
_4538
Ac3H11_4539 - Protein RcsF, at 133,294 to 134,007
_4539
Ac3H11_4540 - Transcriptional regulator PhnF, at 134,009 to 134,791
_4540
Position (kb) 132
133
134 Strain fitness (log2 ratio) -1
0
1 at 131.879 kb on - strand, within Ac3H11_4536 at 131.979 kb on + strand, within Ac3H11_4536 at 131.980 kb on - strand, within Ac3H11_4536 at 131.980 kb on - strand, within Ac3H11_4536 at 132.148 kb on + strand at 132.265 kb on + strand at 132.667 kb on + strand at 132.667 kb on + strand at 132.668 kb on - strand at 132.945 kb on - strand, within Ac3H11_4538 at 132.945 kb on - strand, within Ac3H11_4538 at 132.945 kb on - strand, within Ac3H11_4538 at 132.983 kb on + strand, within Ac3H11_4538 at 132.987 kb on + strand, within Ac3H11_4538 at 133.268 kb on + strand at 133.269 kb on - strand at 133.275 kb on + strand at 133.275 kb on + strand at 133.276 kb on - strand at 133.276 kb on - strand at 133.827 kb on - strand, within Ac3H11_4539 at 133.976 kb on + strand at 133.976 kb on + strand at 133.986 kb on - strand at 133.986 kb on - strand at 133.986 kb on - strand at 134.114 kb on + strand, within Ac3H11_4540 at 134.115 kb on - strand, within Ac3H11_4540 at 134.115 kb on - strand, within Ac3H11_4540 at 134.209 kb on - strand, within Ac3H11_4540
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 45 mM remove 131,879 - Ac3H11_4536 0.71 -0.0 131,979 + Ac3H11_4536 0.80 -0.8 131,980 - Ac3H11_4536 0.80 +1.1 131,980 - Ac3H11_4536 0.80 -0.3 132,148 + -1.1 132,265 + -1.1 132,667 + -0.4 132,667 + -0.0 132,668 - -1.1 132,945 - Ac3H11_4538 0.43 +0.6 132,945 - Ac3H11_4538 0.43 -1.1 132,945 - Ac3H11_4538 0.43 +0.8 132,983 + Ac3H11_4538 0.49 +0.2 132,987 + Ac3H11_4538 0.49 +0.7 133,268 + +0.6 133,269 - -0.0 133,275 + +0.2 133,275 + -0.6 133,276 - +0.2 133,276 - +0.2 133,827 - Ac3H11_4539 0.75 +0.4 133,976 + +0.4 133,976 + -0.6 133,986 - -1.3 133,986 - -0.4 133,986 - -0.5 134,114 + Ac3H11_4540 0.13 +0.4 134,115 - Ac3H11_4540 0.14 +0.2 134,115 - Ac3H11_4540 0.14 -0.0 134,209 - Ac3H11_4540 0.26 -0.3
Or see this region's nucleotide sequence